Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

25185650 .. 25190356

Gene Structure 4707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1185700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACGGTCATGATCAGCTACTCATCGACGTTCTTACCGATTTATCCACCCTGCAACATCACCATCAAGCGGAATTGGGGAGGGAAGAGGAAAATGTTGAAAAGAAATGTGGGAATCATGGTGGGGTGTGTGCAATATGCTTGGATGAGATTGTGCTTCAAGAAACTGCTCTGGTAAAAGGTTGCGAGCATGCCTACTGTGCAACCTGTATTCTTCGTTGGGTGACATACAGCCAAAAACCCACCTGCCCTCAGTGTAAACATCCTTTTGAATTCCTGAATGTCCATCGTTCTCTTGATGGCAGCATACAAGATTACATGTTCGAGGAGAGTGTGTGCCTACTCCTTAGAGCCAAATGGTTTGAGCCGTTAGTTGTGGAGGAGCGTGAAGAGGTGTATGAAGGCCATGAGGATTATTATTATTATCCCTACGAGGATGAAGAGGATGATGATCTAGATGACGCTTACTTCAGCAGTTCATCGGTTATCCGGATTGGTAATCGAAGATGGGGTGATAATGGATATGTGAGGGGTGGGCGTCAAGAAGCAAGGCCTGTTCACAGATCAAGTACCCAGGATTCGGGTGCTAGTTCGTCTCGTGAGCCTAGGAAGAAAGAGGCTGCAGTGGATAAGACCGGGAGGCGTGCAAAGCGGGCACTCAAACGGGAAGCGGCTGATAAGGCAGCTGCAGCAAAACATCAGCAGCATTTGGCAAGGTTGGGCCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

244

Amino Acids

27.81

Weight (kDa)

5.75

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	44 - 87	8.6e-10	Ring finger domain
zf-C3HC4_2	PF13923	44 - 86	9.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	44 - 86	1.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	3 cut(s)	71, 652, 671
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	2 cut(s)	70, 580
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	101, 161, 272
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	2 cut(s)	19, 686
AluI	AGCT	2 cut(s)	19, 686
Alw26I	GTCTC	1 cut(s)	600
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	3 cut(s)	403, 551, 721
ApeKI	GCWGC	6 cut(s)	303, 620, 683, 686, 689, 703
ApoI	RAATTY	1 cut(s)	272
AspA2I	CCTAGG	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	3 cut(s)	53, 235, 524
AvrII	CCTAGG	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	658
BauI	CACGAG	1 cut(s)	597
BbvI	GCAGC	6 cut(s)	315, 607, 673, 695, 701, 715
BccI	CCATC	4 cut(s)	72, 293, 294, 501
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	575
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	3 cut(s)	455, 588, 606
BfmI	CTRYAG	2 cut(s)	621, 687
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	7 cut(s)	304, 621, 672, 684, 687, 690, 704
BlnI	CCTAGG	1 cut(s)	605
BlsI	GCNGC	7 cut(s)	305, 622, 673, 685, 688, 691, 705
Bme1390I	CCNGG	2 cut(s)	575, 637
BmgT120I	GGNCC	1 cut(s)	721
BmrFI	CCNGG	2 cut(s)	575, 637
BpuMI	CCSGG	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	573, 605
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 580
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	573, 605
BseGI	GGATG	4 cut(s)	151, 262, 442, 451
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	70, 580
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	341, 395
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	6 cut(s)	315, 607, 673, 695, 701, 715
BshFI	GGCC	3 cut(s)	405, 553, 723
BsiSI	CCGG	3 cut(s)	490, 636, 724
BslI	CCNNNNNNNGG	2 cut(s)	70, 580
BsmAI	GTCTC	1 cut(s)	600
BsmBI	CGTCTC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	405, 553, 723
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	13, 451, 563
BspACI	CCGC	3 cut(s)	71, 652, 671
BspANI	GGCC	3 cut(s)	405, 553, 723
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	10
BspMAI	CTGCAG	2 cut(s)	625, 691
BspMI	ACCTGC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	573, 605
BssMI	GATC	3 cut(s)	13, 451, 563
BssNI	GRCGYC	1 cut(s)	538
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	2 cut(s)	8, 200
Bst6I	CTCTTC	3 cut(s)	81, 384, 435
BstACI	GRCGYC	1 cut(s)	538
BstC8I	GCNNGC	4 cut(s)	188, 192, 645, 654
BstDEI	CTNAG	2 cut(s)	252, 347
BstF5I	GGATG	4 cut(s)	151, 262, 442, 451
BstKTI	GATC	3 cut(s)	16, 454, 566
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	3 cut(s)	13, 451, 563
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 649, 653, 680, 689
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	2 cut(s)	194, 322
BstSCI	CCNGG	2 cut(s)	573, 635
BstSFI	CTRYAG	2 cut(s)	621, 687
BstSLI	GKGCMC	1 cut(s)	658
BstV1I	GCAGC	6 cut(s)	315, 607, 673, 695, 701, 715
BsuRI	GGCC	3 cut(s)	405, 553, 723
BtsCI	GGATG	4 cut(s)	151, 262, 442, 451
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	260, 630
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	4 cut(s)	188, 192, 645, 654
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	721
CseI	GACGC	2 cut(s)	470, 527
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	5 cut(s)	11, 119, 191, 319, 407
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	252, 347
DpnI	GATC	3 cut(s)	15, 453, 565
DpnII	GATC	3 cut(s)	13, 451, 563
Eam1104I	CTCTTC	3 cut(s)	81, 384, 435
EarI	CTCTTC	3 cut(s)	81, 384, 435
Eco130I	CCWWGG	1 cut(s)	605
Eco147I	AGGCCT	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	5 cut(s)	14, 122, 194, 322, 410
FatI	CATG	5 cut(s)	10, 118, 190, 318, 406
FauI	CCCGC	1 cut(s)	645
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	7 cut(s)	304, 621, 672, 684, 687, 690, 704
FokI	GGATG	4 cut(s)	158, 249, 449, 458
Fsp4HI	GCNGC	7 cut(s)	304, 621, 672, 684, 687, 690, 704
FspBI	CTAG	3 cut(s)	455, 588, 606
GluI	GCNGC	7 cut(s)	304, 621, 672, 684, 687, 690, 704
HaeIII	GGCC	3 cut(s)	405, 553, 723
HapII	CCGG	3 cut(s)	490, 636, 724
HgaI	GACGC	2 cut(s)	470, 527
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	5 cut(s)	14, 122, 194, 322, 410
HinfI	GANTC	2 cut(s)	115, 578
HpaII	CCGG	3 cut(s)	490, 636, 724
HphI	GGTGA	3 cut(s)	53, 235, 524
Hpy166II	GTNNAC	2 cut(s)	260, 559
Hpy188III	TCNNGA	8 cut(s)	11, 161, 277, 296, 455, 490, 542, 599
Hpy8I	GTNNAC	2 cut(s)	260, 559
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	8, 200
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	6 cut(s)	55, 134, 203, 623, 647, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 649, 653, 680, 689
HpyF3I	CTNAG	2 cut(s)	252, 347
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	5 cut(s)	14, 122, 194, 322, 410
Kpn2I	TCCGGA	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	13, 451, 563
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	6 cut(s)	315, 607, 673, 695, 701, 715
MaeI	CTAG	3 cut(s)	455, 588, 606
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	15, 453, 565
MboI	GATC	3 cut(s)	13, 451, 563
MboII	GAAGA	6 cut(s)	98, 206, 401, 452, 516, 622
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	2 cut(s)	74, 272
MroI	TCCGGA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	3 cut(s)	490, 636, 724
MspR9I	CCNGG	2 cut(s)	575, 637
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	5 cut(s)	200, 649, 653, 680, 689
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	3 cut(s)	13, 451, 563
NlaIII	CATG	5 cut(s)	14, 122, 194, 322, 410
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	2 cut(s)	194, 322
PaeI	GCATGC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	115, 578
PkrI	GCNGC	7 cut(s)	305, 622, 673, 685, 688, 691, 705
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	721
PstI	CTGCAG	2 cut(s)	625, 691
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
SatI	GCNGC	7 cut(s)	304, 621, 672, 684, 687, 690, 704
Sau3AI	GATC	3 cut(s)	13, 451, 563
Sau96I	GGNCC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	575, 637
SduI	GDGCHC	1 cut(s)	658
SetI	ASST	8 cut(s)	21, 33, 184, 209, 248, 396, 688, 719
SfcI	CTRYAG	2 cut(s)	621, 687
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	74, 272
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	71, 652, 671
SspMI	CTAG	3 cut(s)	455, 588, 606
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	573, 635
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	8, 200
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	27, 324, 502
TasI	AATT	2 cut(s)	74, 272
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	115, 578
TscAI	CASTG	2 cut(s)	260, 630
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	6 cut(s)	303, 620, 683, 686, 689, 703
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	414, 453, 468
TspRI	CASTG	2 cut(s)	260, 630
XapI	RAATTY	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	2 cut(s)	194, 322
XmaJI	CCTAGG	1 cut(s)	605
XspI	CTAG	3 cut(s)	455, 588, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.