Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

20072074 .. 20075645

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGACTTCAGTCATCAACATGGACGGTCAGGATCAGATACTCAGCGATCTTATCAATTCATCCACCCAGCAACATCAGGGGGAAATGCAGAGCAACACAGACAACGTTGAAAAGAGATGTGGGAATCATGGTGGGGTGTGTGCAATATGCTTGGATGAGATTATGCTTCAAGAAACTGCTCTCGTAAAAGGTTGCGAGCATGCCTACTGTGCAACCTGCATTCTTCGTTGGGTGACATACAGCCAAAAACCCACCTGCCCTCAATGCAAACATCCATTTGAGTTCCTGAATGTCCATCGTTCGCTTGATGGCAGCATACATGACTACATGTTCGAGGAGAGCGTGTGCTTACTTCTTAGAGCAAAATGGTTTGAGCCTCTGATTGTGGAGGAACGTGAAGATGTGTATGATGACCCTGATGATTATTATTACCCCTACGAGGACGAAGAGGATGATGATCTGGATGAAGCTTACTTCAGCAGTTCATCGAGTATCCGAATCGGTAATCGAAGATGGGGAGATAATGGATATGTGAGAGGTGGGCGTCAAGAAGCAAGGCCTGTTAACAGATCAAACATAGAGGACTCGGGTGCTAGTTCGTCTCGTGAGCCTAGGAAGAAAGAGGCTGCAATGGATAAAACTGGGAGACGTGCGAAGCGGGCACTTAAACGTGAAGCTGCTGATAAGGCTGCTGCAGCAAAACATCAGCAGCATTTGGCAAGGTTGGGCCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

246

Amino Acids

27.95

Weight (kDa)

5.44

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	2 cut(s)	224, 263
AciI	CCGC	1 cut(s)	658
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	460
AcyI	GRCGYC	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	110, 170
AjiI	CACGTC	1 cut(s)	650
AluBI	AGCT	2 cut(s)	470, 677
AluI	AGCT	2 cut(s)	470, 677
Alw26I	GTCTC	2 cut(s)	606, 640
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	2 cut(s)	557, 727
ApeKI	GCWGC	7 cut(s)	312, 626, 677, 689, 692, 695, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspA2I	CCTAGG	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	586
AvrII	CCTAGG	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	664
BauI	CACGAG	1 cut(s)	603
BbvI	GCAGC	7 cut(s)	324, 613, 664, 676, 679, 707, 721
BccI	CCATC	3 cut(s)	302, 303, 507
BciVI	GTATCC	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	606, 640
BfaI	CTAG	2 cut(s)	594, 612
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	2 cut(s)	224, 263
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	7 cut(s)	313, 627, 678, 690, 693, 696, 710
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	7 cut(s)	314, 628, 679, 691, 694, 697, 711
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	651
BoxI	GACNNNNGTC	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	5 cut(s)	59, 160, 271, 457, 469
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	646
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	7 cut(s)	324, 613, 664, 676, 679, 707, 721
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	2 cut(s)	559, 729
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	606, 640
BsmBI	CGTCTC	2 cut(s)	606, 640
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	559, 729
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	31, 46, 457, 569
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	2 cut(s)	559, 729
BspCNI	CTCAG	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	2 cut(s)	224, 263
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	4 cut(s)	31, 46, 457, 569
BssNI	GRCGYC	1 cut(s)	544
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	611
Bst2BI	CACGAG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	26, 209
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	197, 201, 660
BstDEI	CTNAG	2 cut(s)	41, 356
BstF5I	GGATG	5 cut(s)	59, 160, 271, 457, 469
BstKTI	GATC	4 cut(s)	34, 49, 460, 572
BstMAI	GTCTC	2 cut(s)	606, 640
BstMBI	GATC	4 cut(s)	31, 46, 457, 569
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 264, 659, 686, 695
BstNSI	RCATGY	2 cut(s)	203, 331
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	664
BstV1I	GCAGC	7 cut(s)	324, 613, 664, 676, 679, 707, 721
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	559, 729
BtrI	CACGTC	1 cut(s)	650
BtsCI	GGATG	5 cut(s)	59, 160, 271, 457, 469
BveI	ACCTGC	2 cut(s)	224, 263
Cac8I	GCNNGC	3 cut(s)	197, 201, 660
Cfr13I	GGNCC	1 cut(s)	727
CseI	GACGC	1 cut(s)	533
CviAII	CATG	5 cut(s)	19, 128, 200, 320, 328
CviJI	RGCY	9 cut(s)	243, 376, 470, 559, 610, 626, 677, 689, 729
CviKI_1	RGCY	9 cut(s)	243, 376, 470, 559, 610, 626, 677, 689, 729
DdeI	CTNAG	2 cut(s)	41, 356
DpnI	GATC	4 cut(s)	33, 48, 459, 571
DpnII	GATC	4 cut(s)	31, 46, 457, 569
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	611
Eco147I	AGGCCT	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	611
Esp3I	CGTCTC	2 cut(s)	606, 640
FaeI	CATG	5 cut(s)	22, 131, 203, 323, 331
FatI	CATG	5 cut(s)	18, 127, 199, 319, 327
FauI	CCCGC	1 cut(s)	651
Fnu4HI	GCNGC	7 cut(s)	313, 627, 678, 690, 693, 696, 710
FokI	GGATG	5 cut(s)	46, 167, 258, 464, 476
Fsp4HI	GCNGC	7 cut(s)	313, 627, 678, 690, 693, 696, 710
FspBI	CTAG	2 cut(s)	594, 612
GluI	GCNGC	7 cut(s)	313, 627, 678, 690, 693, 696, 710
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	559, 729
HapII	CCGG	1 cut(s)	730
HgaI	GACGC	1 cut(s)	533
Hin1I	GRCGYC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	22, 131, 203, 323, 331
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	3 cut(s)	124, 498, 584
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	36, 381, 497
Hpy188III	TCNNGA	6 cut(s)	29, 170, 286, 461, 548, 605
Hpy8I	GTNNAC	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	26, 209
HpyCH4IV	ACGT	4 cut(s)	105, 394, 649, 670
HpyCH4V	TGCA	7 cut(s)	88, 143, 212, 219, 267, 629, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 264, 659, 686, 695
HpyF3I	CTNAG	2 cut(s)	41, 356
HpySE526I	ACGT	4 cut(s)	105, 394, 649, 670
Hsp92I	GRCGYC	1 cut(s)	544
Hsp92II	CATG	5 cut(s)	22, 131, 203, 323, 331
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	31, 46, 457, 569
Lsp1109I	GCAGC	7 cut(s)	324, 613, 664, 676, 679, 707, 721
MaeI	CTAG	2 cut(s)	594, 612
MaeII	ACGT	4 cut(s)	105, 394, 649, 670
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	33, 48, 459, 571
MboI	GATC	4 cut(s)	31, 46, 457, 569
MboII	GAAGA	5 cut(s)	215, 410, 458, 522, 628
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	9 cut(s)	270, 328, 382, 387, 433, 442, 530, 574, 616
MseI	TTAA	2 cut(s)	564, 666
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	730
Mva1269I	GAATGC	1 cut(s)	219
MwoI	GCNNNNNNNGC	5 cut(s)	209, 264, 659, 686, 695
NdeII	GATC	4 cut(s)	31, 46, 457, 569
NlaIII	CATG	5 cut(s)	22, 131, 203, 323, 331
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	2 cut(s)	203, 331
PaeI	GCATGC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	559
PciI	ACATGT	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	124, 498
PkrI	GCNGC	7 cut(s)	314, 628, 679, 691, 694, 697, 711
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PscI	ACATGT	1 cut(s)	327
PshAI	GACNNNNGTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	727
PstI	CTGCAG	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	564, 666
SatI	GCNGC	7 cut(s)	313, 627, 678, 690, 693, 696, 710
Sau3AI	GATC	4 cut(s)	31, 46, 457, 569
Sau96I	GGNCC	1 cut(s)	727
SchI	GAGTC	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	17
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	1 cut(s)	55
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	1 cut(s)	658
SspMI	CTAG	2 cut(s)	594, 612
StuI	AGGCCT	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	26, 209
TaiI	ACGT	4 cut(s)	108, 397, 652, 673
TaqI	TCGA	3 cut(s)	333, 488, 508
TasI	AATT	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	124, 498
Tru1I	TTAA	2 cut(s)	564, 666
Tru9I	TTAA	2 cut(s)	564, 666
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	7 cut(s)	312, 626, 677, 689, 692, 695, 709
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	48, 474, 480
XceI	RCATGY	2 cut(s)	203, 331
XmaJI	CCTAGG	1 cut(s)	611
XspI	CTAG	2 cut(s)	594, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.