Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

52710109 .. 52713300

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACTTCAGTCATCAACGTCGACGGCCACGATCACCTACCCTTGGATCTTTGCAATTCATCCACCCATCAACACCAGGGGGAAATGGAAAGCAAAGAAGATAATTGTGAAAAGGGGCGATGTGGGAACCATGGTGGGGTGTGTGCAATATGTTTGGATGAGATTATGCTTCAGGAAACGGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGCAACTTGCATTCTTCGTTGGGTGACATACAGCAAATCACCCACCTGCCCTCAGTGCAAACATCCATTCGAGTTCCTGAATGTCCATCGGTCACTTGATGGCAGCATACATGATTTTATGTTCGAGGAGAGTGTGTGTCTACTGCTTAGAGCCACATGGTTTGAGCCTCTAGTTGTGGAGGATCGCGAAGATGTGTATGCATATGATGATTCTGAAGATTATTATCCCTATGAGGATGAAGAGGATGACCTAGATGAAGCTTACTTCAGCGGTTCATCGAGTATCCGTATTGGTAATCGAAGGTGGGGAGATAATGGGTATGTGAGCGCTGGACGGCAAGAAGCAAGGCCTGTTCACAGATCAAATATCCAGGAAGCAGGTGCTAGTTCTTCTCGTGAACCTAGAAAGAAAGAGGCTTCAATGGATAAAACTGGGAGACGGGCAAAGAGGGCACTTAAGCGAGAAGCCGCGGATAAGGCTGCTGCAGCAAAACATGAGCTGCATTTGGCAAGGTTGGGCCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

247

Amino Acids

27.83

Weight (kDa)

5.56

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	48 - 91	6.2e-10	Ring finger domain
zf-C3HC4_2	PF13923	48 - 90	4.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	48 - 90	3.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	266, 581
Acc36I	ACCTGC	2 cut(s)	266, 581
AccI	GTMKAC	2 cut(s)	21, 352
AccII	CGCG	2 cut(s)	399, 683
AciI	CCGC	3 cut(s)	483, 681, 683
AclWI	GGATC	2 cut(s)	54, 402
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	3 cut(s)	155, 447, 463
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	43, 136
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	1 cut(s)	633
AjnI	CCWGG	2 cut(s)	75, 582
AluBI	AGCT	2 cut(s)	473, 712
AluI	AGCT	2 cut(s)	473, 712
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	54, 402
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	3 cut(s)	25, 560, 730
ApeKI	GCWGC	5 cut(s)	315, 692, 695, 698, 712
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	3 cut(s)	26, 243, 247
BaeGI	GKGCMC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	606
BbvI	GCAGC	5 cut(s)	327, 679, 682, 699, 710
BccI	CCATC	3 cut(s)	75, 305, 306
BceAI	ACGGC	3 cut(s)	40, 195, 563
BciT130I	CCWGG	2 cut(s)	77, 584
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	4 cut(s)	383, 464, 597, 615
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	668
BfuAI	ACCTGC	2 cut(s)	266, 581
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
BlsI	GCNGC	6 cut(s)	317, 682, 694, 697, 700, 714
Bme1390I	CCNGG	2 cut(s)	77, 584
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	77, 584
BmrI	ACTGGG	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	654
BoxI	GACNNNNGTC	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	42, 76, 130, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 136
Bse1I	ACTGG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	77, 584
BseDI	CCNNGG	4 cut(s)	42, 76, 130, 681
BseGI	GGATG	5 cut(s)	59, 163, 274, 454, 463
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	43, 136
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	5 cut(s)	327, 679, 682, 699, 710
Bsh1236I	CGCG	2 cut(s)	399, 683
BshFI	GGCC	3 cut(s)	27, 562, 732
BsiSI	CCGG	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	43, 136
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	3 cut(s)	27, 562, 732
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	31, 46, 394, 572
Bsp19I	CCATGG	1 cut(s)	130
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	3 cut(s)	483, 681, 683
BspANI	GGCC	3 cut(s)	27, 562, 732
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	2 cut(s)	399, 683
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	2 cut(s)	266, 581
BspPI	GGATC	2 cut(s)	54, 402
BspTI	CTTAAG	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	4 cut(s)	42, 76, 130, 681
BssMI	GATC	4 cut(s)	31, 46, 394, 572
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	42, 130
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	77, 584
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	200, 204
BstDEI	CTNAG	2 cut(s)	264, 359
BstDSI	CCRYGG	2 cut(s)	130, 681
BstF5I	GGATG	5 cut(s)	59, 163, 274, 454, 463
BstFNI	CGCG	2 cut(s)	399, 683
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	34, 49, 397, 575
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	31, 46, 394, 572
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 267, 662, 689, 698
BstNI	CCWGG	2 cut(s)	77, 584
BstNSI	RCATGY	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	75, 582
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	667
BstUI	CGCG	2 cut(s)	399, 683
BstV1I	GCAGC	5 cut(s)	327, 679, 682, 699, 710
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	27, 562, 732
BtgI	CCRYGG	2 cut(s)	130, 681
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	59, 163, 274, 454, 463
BtsIMutI	CAGTG	1 cut(s)	272
BtuMI	TCGCGA	1 cut(s)	399
BveI	ACCTGC	2 cut(s)	266, 581
Cac8I	GCNNGC	2 cut(s)	200, 204
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	730
Cfr42I	CCGCGG	1 cut(s)	684
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	5 cut(s)	131, 203, 323, 369, 707
DdeI	CTNAG	2 cut(s)	264, 359
DpnI	GATC	4 cut(s)	33, 48, 396, 574
DpnII	GATC	4 cut(s)	31, 46, 394, 572
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	42, 130
Eco147I	AGGCCT	1 cut(s)	562
Eco47III	AGCGCT	1 cut(s)	541
Eco57I	CTGAAG	3 cut(s)	155, 447, 463
EcoRII	CCWGG	2 cut(s)	75, 582
EcoT14I	CCWWGG	2 cut(s)	42, 130
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	42, 130
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	5 cut(s)	134, 206, 326, 372, 710
FatI	CATG	5 cut(s)	130, 202, 322, 368, 706
FauNDI	CATATG	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	21, 352
Fnu4HI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
FokI	GGATG	5 cut(s)	46, 170, 261, 461, 470
Fsp4HI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
FspBI	CTAG	4 cut(s)	383, 464, 597, 615
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	27, 562, 732
HapII	CCGG	1 cut(s)	733
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	134, 206, 326, 372, 710
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	3 cut(s)	26, 243, 247
Hpy166II	GTNNAC	4 cut(s)	22, 353, 568, 611
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	4 cut(s)	173, 289, 398, 608
Hpy8I	GTNNAC	4 cut(s)	22, 353, 568, 611
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	507
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	8 cut(s)	54, 146, 215, 222, 270, 413, 698, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 267, 662, 689, 698
HpyF3I	CTNAG	2 cut(s)	264, 359
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	134, 206, 326, 372, 710
HspAI	GCGC	1 cut(s)	540
KspI	CCGCGG	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	31, 46, 394, 572
Lsp1109I	GCAGC	5 cut(s)	327, 679, 682, 699, 710
MaeI	CTAG	4 cut(s)	383, 464, 597, 615
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	235, 303
MalI	GATC	4 cut(s)	33, 48, 396, 574
MboI	GATC	4 cut(s)	31, 46, 394, 572
MboII	GAAGA	6 cut(s)	110, 218, 413, 440, 464, 594
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	2 cut(s)	55, 103
MnlI	CCTC	8 cut(s)	273, 331, 385, 390, 439, 448, 619, 654
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	483, 683
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	2 cut(s)	77, 584
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	2 cut(s)	77, 584
MvnI	CGCG	2 cut(s)	399, 683
MwoI	GCNNNNNNNGC	5 cut(s)	212, 267, 662, 689, 698
NcoI	CCATGG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	4 cut(s)	31, 46, 394, 572
NlaIII	CATG	5 cut(s)	134, 206, 326, 372, 710
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	235, 303
NruI	TCGCGA	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PaqCI	CACCTGC	2 cut(s)	266, 581
PceI	AGGCCT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	6 cut(s)	317, 682, 694, 697, 700, 714
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	75, 582
PspGI	CCWGG	2 cut(s)	75, 582
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	46
RruI	TCGCGA	1 cut(s)	399
SacII	CCGCGG	1 cut(s)	684
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
Sau3AI	GATC	4 cut(s)	31, 46, 394, 572
Sau96I	GGNCC	1 cut(s)	730
ScrFI	CCNGG	2 cut(s)	77, 584
SduI	GDGCHC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	696
Sfr303I	CCGCGG	1 cut(s)	684
SgrBI	CCGCGG	1 cut(s)	684
SgrDI	CGTCGACG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	55, 103
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	3 cut(s)	483, 681, 683
SspMI	CTAG	4 cut(s)	383, 464, 597, 615
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	75, 582
StyI	CCWWGG	2 cut(s)	42, 130
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	21, 282, 336, 491, 511
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	55, 103
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	2 cut(s)	235, 303
TseI	GCWGC	5 cut(s)	315, 692, 695, 698, 712
Tsp45I	GTSAC	2 cut(s)	235, 303
TspDTI	ATGAA	4 cut(s)	48, 465, 477, 483
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	668
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	21, 352
XspI	CTAG	4 cut(s)	383, 464, 597, 615
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.