Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

20927047 .. 20930959

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27900.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATTTTAAGTTGGATCAGTAGAAGAAACTTAGAGGAAATTATCAAATCCATAATGACTTCGGCCCTGGATCTCCTTCCCCTTCAACACCAGGGGGAGATGGAGATGGAAAGCAAAGTAGATAATTGTGACAACCACGGTGGGGTGTGTGCAATTTGTTTGGATGAGATTGTGCTTCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGCAACTTGCATTCTTCGTTGGGTGACATACAGCAAATCACCCACGTGCCCTCAGTGCAAACATCCATTCGAGTTCCTGAATGTCCATCGGTCACTTGATGGCAGCTTACATGATTATATGTTCGAGGAGAGTGTGTGTCTACTGCTTAGAGCCACATGGTTTGAGCCTCTAGTTGTGGAGGATCGTGAAGATGTTTATGCATATGATGATCATGAAGATTATTATCCGTACGAGGATGAAGAGGACGACCTAGATGAAGCTTACTTCAGCAGTTCATCGAGTATCCGTATTGGTAATCGAAGGTGGGGGGATAATGGGTATGTGAGCGCTGGACGGCAAGAAGCAAGGCCTGTTCACAGATCAAACATCCAGGAAGCGGGTGCTAGTTCATCTCGTGAACCTAGAAAGAAAGAGGCTTCAATGGATAAAACTGGGAGACGGGCAAAGAGGGCACTTAAGCGAGAAGCTGCGGATAAGGCTGCTGCAGCAAAACATCAGCTTCATTTGGCAAGGTTGGGCCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

249

Amino Acids

28.36

Weight (kDa)

5.61

Isoelectric Point (pI)

61.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	57 - 100	6e-10	Ring finger domain
zf-C3HC4_2	PF13923	57 - 99	7.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	57 - 99	2.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	2 cut(s)	596, 689
AclWI	GGATC	3 cut(s)	23, 78, 408
AcuI	CTGAAG	2 cut(s)	161, 469
AcvI	CACGTG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	449
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	142, 595
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	2 cut(s)	86, 639
AjnI	CCWGG	3 cut(s)	66, 90, 588
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	4 cut(s)	324, 479, 686, 718
AluI	AGCT	4 cut(s)	324, 479, 686, 718
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	3 cut(s)	23, 78, 408
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	3 cut(s)	63, 566, 736
ApeKI	GCWGC	5 cut(s)	321, 686, 698, 701, 704
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	64, 736
AsuHPI	GGTGA	2 cut(s)	249, 253
BaeGI	GKGCMC	2 cut(s)	269, 673
BauI	CACGAG	1 cut(s)	612
BbrPI	CACGTG	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	333, 673, 685, 688, 716
BccI	CCATC	4 cut(s)	94, 100, 311, 312
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	3 cut(s)	68, 92, 590
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	4 cut(s)	389, 470, 603, 621
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	5 cut(s)	322, 687, 699, 702, 705
BlsI	GCNGC	5 cut(s)	323, 688, 700, 703, 706
Bme1390I	CCNGG	3 cut(s)	68, 92, 590
BmgT120I	GGNCC	2 cut(s)	64, 736
BmrFI	CCNGG	3 cut(s)	68, 92, 590
BmrI	ACTGGG	1 cut(s)	660
BmuI	ACTGGG	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	66, 91, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 595
Bse1I	ACTGG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	68, 92, 590
BseDI	CCNNGG	3 cut(s)	66, 91, 136
BseGI	GGATG	4 cut(s)	169, 280, 460, 585
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	142, 595
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	2 cut(s)	269, 673
BseXI	GCAGC	5 cut(s)	333, 673, 685, 688, 716
BshFI	GGCC	3 cut(s)	65, 568, 738
BsiSI	CCGG	1 cut(s)	739
BsiWI	CGTACG	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	142, 595
BsmAI	GTCTC	1 cut(s)	649
BsmBI	CGTCTC	1 cut(s)	649
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	3 cut(s)	65, 568, 738
Bsp1286I	GDGCHC	2 cut(s)	269, 673
Bsp143I	GATC	5 cut(s)	15, 70, 400, 427, 578
BspACI	CCGC	2 cut(s)	596, 689
BspANI	GGCC	3 cut(s)	65, 568, 738
BspCNI	CTCAG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	3 cut(s)	23, 78, 408
BspTI	CTTAAG	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	66, 91, 136
BssMI	GATC	5 cut(s)	15, 70, 400, 427, 578
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	3 cut(s)	68, 92, 590
Bst4CI	ACNGT	2 cut(s)	140, 218
Bst6I	CTCTTC	1 cut(s)	453
BstAFI	CTTAAG	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	206, 210
BstDEI	CTNAG	3 cut(s)	31, 270, 365
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	4 cut(s)	169, 280, 460, 585
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	5 cut(s)	18, 73, 403, 430, 581
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	5 cut(s)	15, 70, 400, 427, 578
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 273, 668, 695, 704
BstNI	CCWGG	3 cut(s)	68, 92, 590
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	66, 90, 588
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	2 cut(s)	269, 673
BstV1I	GCAGC	5 cut(s)	333, 673, 685, 688, 716
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	65, 568, 738
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	4 cut(s)	169, 280, 460, 585
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	206, 210
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	64, 736
Csp6I	GTAC	1 cut(s)	448
CspCI	CAANNNNNGTGG	4 cut(s)	121, 156, 361, 396
CviAII	CATG	4 cut(s)	209, 329, 375, 431
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	31, 270, 365
DpnI	GATC	5 cut(s)	17, 72, 402, 429, 580
DpnII	GATC	5 cut(s)	15, 70, 400, 427, 578
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	568
Eco47III	AGCGCT	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	161, 469
Eco72I	CACGTG	1 cut(s)	264
EcoRII	CCWGG	3 cut(s)	66, 90, 588
EcoT22I	ATGCAT	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	4 cut(s)	212, 332, 378, 434
FatI	CATG	4 cut(s)	208, 328, 374, 430
FauI	CCCGC	1 cut(s)	589
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	5 cut(s)	322, 687, 699, 702, 705
FokI	GGATG	4 cut(s)	176, 267, 467, 572
Fsp4HI	GCNGC	5 cut(s)	322, 687, 699, 702, 705
FspBI	CTAG	4 cut(s)	389, 470, 603, 621
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	5 cut(s)	322, 687, 699, 702, 705
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	65, 568, 738
HapII	CCGG	1 cut(s)	739
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	4 cut(s)	212, 332, 378, 434
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	477
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	2 cut(s)	249, 253
Hpy166II	GTNNAC	3 cut(s)	359, 574, 617
Hpy188III	TCNNGA	5 cut(s)	179, 295, 404, 431, 614
Hpy8I	GTNNAC	3 cut(s)	359, 574, 617
HpyAV	CCTTC	3 cut(s)	86, 92, 513
HpyCH4III	ACNGT	2 cut(s)	140, 218
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	6 cut(s)	152, 221, 228, 276, 419, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 273, 668, 695, 704
HpyF3I	CTNAG	3 cut(s)	31, 270, 365
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	212, 332, 378, 434
HspAI	GCGC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	15, 70, 400, 427, 578
Lsp1109I	GCAGC	5 cut(s)	333, 673, 685, 688, 716
MaeI	CTAG	4 cut(s)	389, 470, 603, 621
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	128, 241, 309
MalI	GATC	5 cut(s)	17, 72, 402, 429, 580
MboI	GATC	5 cut(s)	15, 70, 400, 427, 578
MboII	GAAGA	5 cut(s)	36, 224, 419, 446, 470
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	269, 673
MluCI	AATT	3 cut(s)	39, 124, 153
MnlI	CCTC	9 cut(s)	28, 279, 337, 391, 396, 445, 454, 625, 660
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	2 cut(s)	8, 675
MslI	CAYNNNNRTG	1 cut(s)	262
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	3 cut(s)	68, 92, 590
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	3 cut(s)	68, 92, 590
MwoI	GCNNNNNNNGC	5 cut(s)	218, 273, 668, 695, 704
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	5 cut(s)	15, 70, 400, 427, 578
NlaIII	CATG	4 cut(s)	212, 332, 378, 434
NmuCI	GTSAC	3 cut(s)	128, 241, 309
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	262
PaeI	GCATGC	1 cut(s)	212
PagI	TCATGA	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	568
PctI	GAATGC	1 cut(s)	228
Pfl23II	CGTACG	1 cut(s)	447
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	323, 688, 700, 703, 706
PmaCI	CACGTG	1 cut(s)	264
PmlI	CACGTG	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	264
Psp6I	CCWGG	3 cut(s)	66, 90, 588
PspCI	CACGTG	1 cut(s)	264
PspGI	CCWGG	3 cut(s)	66, 90, 588
PspLI	CGTACG	1 cut(s)	447
PspPI	GGNCC	2 cut(s)	64, 736
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	8, 675
SatI	GCNGC	5 cut(s)	322, 687, 699, 702, 705
Sau3AI	GATC	5 cut(s)	15, 70, 400, 427, 578
Sau96I	GGNCC	2 cut(s)	64, 736
ScrFI	CCNGG	3 cut(s)	68, 92, 590
SduI	GDGCHC	2 cut(s)	269, 673
SfcI	CTRYAG	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	3 cut(s)	39, 124, 153
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	2 cut(s)	596, 689
SspMI	CTAG	4 cut(s)	389, 470, 603, 621
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	3 cut(s)	66, 90, 588
TaaI	ACNGT	2 cut(s)	140, 218
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	288, 342, 497, 517
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	39, 124, 153
Tru1I	TTAA	2 cut(s)	8, 675
Tru9I	TTAA	2 cut(s)	8, 675
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	3 cut(s)	128, 241, 309
TseI	GCWGC	5 cut(s)	321, 686, 698, 701, 704
Tsp45I	GTSAC	3 cut(s)	128, 241, 309
TspDTI	ATGAA	6 cut(s)	447, 471, 483, 489, 597, 710
TspGWI	ACGGA	2 cut(s)	435, 494
TspRI	CASTG	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	674
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	4 cut(s)	389, 470, 603, 621
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.