AT5G12330

lateral root primordium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009808
Physical Location & Seq
Reverse (-)
3987375 .. 3989876
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12330.4

Sequence Viewer

Length: 963 bp
ATGGGCATGGTTGGTCTAAGAGATGTATTCCTTGTTGCTCCGGCTTATCACCACCAGAACGCCGGAGTGATATCTGGATCCGATCATATGAACAGTAATGCAGCTGCGGCGGCGGCGCTCGGTGTCGGAGTGATTCCTCTACTCACGGCGGGTACACCGCAGCAAAACGTGGAAGACTCCGACATTAACTTCCTCGGAAACAACCGGAGATGGCAGAATAACAACAACAACCACGAAACGCAGTATCTTCACTTCAAGAGTACTAACCAGACAACGGTCGGAACGAGCTCGAACAACTCGGGGTCTGGCTCAGGCGCATCAGGAACCGCCACGTGTCAAGACTGTGGAAATCAGGCGAAGAAAGAGTGTAAGCAGAGGCGGTGTAGGACTTGCTGCAAGAGCCGTGGCTTTGATTGTTCTACTCACGTGAAGAGCACGTGGGTCTCTGCTGCTCGGCGGAGAGAGAGGCAGGTCATGCCTACCGGCGCTAATCCAACGGCTGGCTCGTCTCTTTCGACCTCCTCCGGGACGAAGAAGCCGAGGATCGTAGGGTCTCAACAACAACAACAACAACAAGCCACTTCTCATACTTCAACTTCTAACACACCACCTCAAAGTTTCGAGACCAGCTCCAGCCGACAAGACGGAGGAGGGTCAAGGGAAGCATGGCCAGGGCAGGTTAGGGCAGCGGCGGTGTTCAAGTGTGTTAGAGTAACGGCAGTGGAGGACGGGGATGATGAGTACGCGTACCAAGCGGTGGTGAAAATCGGCGGCCATGTCTTTAAAGGATTCTTGTACGATCAAGGGCTTGAACCAAAAGAAGGTTTTCCTAGTATGTCGGATTTGCATTTAGGTGGTTCAGCCAATAACCATAACGGAGTTTCTGCCTCGGCGCCTATTCTCGACCCGCCTAATGTTGTTTATGGTGGTGGTGGAGGTTCAGGCGGTGGGTTTTACAGTTAA

Protein Analysis

320

Amino Acids

33.62

Weight (kDa)

8.77

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 196 - 358 1.5e-58 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12330 AT5G12330 AT5G12330 AT5G12330
fragaria_vesca FvH4_3g27920
malus_domestica MD03G1166900.v1.1 MD11G1186100.v1.1
prunus_persica Prupe.4G267200_v2.0.a1
pyrus_communis pycom03g12230 pycom12g08680
rosa_chinensis RchiOBHm_Chr5g0050641
rosa_laevigata RLG00000034715
rosa_multiflora Rmu_ssc0000350.1_g000034
rosa_roxburghii Rroxscaffold_1G00030150
rosa_rugosa Rorug05G0262400 Rorug05G0262500
rosa_samantha Rh5AG334700 Rh5BG344000 Rh5CG371800 Rh5DG357000
rosa_wichuraiana Rw5G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 460, 667
AccB1I GGYRCC 1 cut(s) 892
AccB7I CCANNNNNTGG 2 cut(s) 500, 757
AccII CGCG 1 cut(s) 746
AclWI GGATC 3 cut(s) 72, 85, 551
AcoI YGGCCR 2 cut(s) 668, 772
AcvI CACGTG 3 cut(s) 333, 427, 438
AcyI GRCGYC 1 cut(s) 893
AfaI GTAC 5 cut(s) 154, 262, 743, 749, 797
AfiI CCNNNNNNNGG 5 cut(s) 274, 500, 525, 757, 821
AflIII ACRYGT 2 cut(s) 332, 744
AgsI TTSAA 4 cut(s) 256, 594, 700, 812
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 3 cut(s) 104, 288, 630
AluI AGCT 3 cut(s) 104, 288, 630
Alw21I GWGCWC 2 cut(s) 290, 437
Alw26I GTCTC 4 cut(s) 448, 513, 558, 617
AlwI GGATC 3 cut(s) 72, 85, 551
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 2 cut(s) 668, 772
ApeKI GCWGC 6 cut(s) 101, 104, 160, 393, 449, 686
Asp700I GAANNNNTTC 1 cut(s) 825
AspLEI GCGC 4 cut(s) 118, 317, 488, 895
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 2 cut(s) 41, 772
AvaI CYCGRG 1 cut(s) 298
BalI TGGCCA 1 cut(s) 670
BamHI GGATCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 892
BanII GRGCYC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbrPI CACGTG 3 cut(s) 333, 427, 438
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 290, 437
BbvI GCAGC 6 cut(s) 91, 113, 172, 380, 436, 698
BccI CCATC 1 cut(s) 204
BceAI ACGGC 4 cut(s) 162, 387, 513, 732
BciT130I CCWGG 1 cut(s) 672
BcnI CCSGG 1 cut(s) 526
BcoDI GTCTC 4 cut(s) 448, 513, 558, 617
BfaI CTAG 1 cut(s) 831
BfoI RGCGCY 3 cut(s) 119, 489, 896
BfuAI ACCTGC 2 cut(s) 460, 667
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 526, 672
BmeT110I CYCGRG 1 cut(s) 298
BmiI GGNNCC 3 cut(s) 79, 325, 894
BmrFI CCNGG 2 cut(s) 526, 672
BmsI GCATC 1 cut(s) 326
BoxI GACNNNNGTC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 1 cut(s) 616
Bpu10I CCTNAGC 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 526
BsaAI YACGTR 3 cut(s) 333, 427, 438
BsaHI GRCGYC 1 cut(s) 893
BsaI GGTCTC 3 cut(s) 448, 558, 617
BsaJI CCNNGG 5 cut(s) 193, 403, 539, 671, 888
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 5 cut(s) 274, 500, 525, 757, 821
Bse118I RCCGGY 1 cut(s) 482
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 5 cut(s) 193, 403, 539, 671, 888
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 5 cut(s) 274, 500, 525, 757, 821
BseMII CTCAG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 511, 663
BseXI GCAGC 6 cut(s) 91, 113, 172, 380, 436, 698
Bsh1236I CGCG 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 670, 774
BshNI GGYRCC 1 cut(s) 892
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 2 cut(s) 290, 437
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 5 cut(s) 41, 63, 205, 483, 525
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 5 cut(s) 274, 500, 525, 757, 821
BsmAI GTCTC 4 cut(s) 448, 513, 558, 617
BsmBI CGTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 2 cut(s) 670, 774
Bso31I GGTCTC 3 cut(s) 448, 558, 617
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 290, 437
Bsp143I GATC 4 cut(s) 77, 82, 543, 799
BspANI GGCC 2 cut(s) 670, 774
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 1 cut(s) 746
BspLI GGNNCC 3 cut(s) 79, 325, 894
BspMI ACCTGC 2 cut(s) 460, 667
BspPI GGATC 3 cut(s) 72, 85, 551
BspQI GCTCTTC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 892
BspTNI GGTCTC 3 cut(s) 448, 558, 617
BsrFI RCCGGY 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 193, 403, 539, 671, 888
BssMI GATC 4 cut(s) 77, 82, 543, 799
BssNI GRCGYC 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 4 cut(s) 95, 277, 344, 959
Bst6I CTCTTC 1 cut(s) 425
BstACI GRCGYC 1 cut(s) 893
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBAI YACGTR 3 cut(s) 333, 427, 438
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 2 cut(s) 17, 310
BstDSI CCRYGG 1 cut(s) 403
BstF5I GGATG 1 cut(s) 739
BstFNI CGCG 1 cut(s) 746
BstH2I RGCGCY 3 cut(s) 119, 489, 896
BstHHI GCGC 4 cut(s) 118, 317, 488, 895
BstKTI GATC 4 cut(s) 80, 85, 546, 802
BstMAI GTCTC 4 cut(s) 448, 513, 558, 617
BstMBI GATC 4 cut(s) 77, 82, 543, 799
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 6 cut(s) 107, 110, 113, 399, 475, 752
BstNI CCWGG 1 cut(s) 672
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 524, 670
BstUI CGCG 1 cut(s) 746
BstV1I GCAGC 6 cut(s) 91, 113, 172, 380, 436, 698
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 2 cut(s) 670, 774
BtgI CCRYGG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 726
BveI ACCTGC 2 cut(s) 460, 667
Cac8I GCNNGC 1 cut(s) 502
CfoI GCGC 4 cut(s) 118, 317, 488, 895
Cfr10I RCCGGY 1 cut(s) 482
Csp6I GTAC 5 cut(s) 153, 261, 742, 748, 796
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 4 cut(s) 7, 475, 666, 776
CviQI GTAC 5 cut(s) 153, 261, 742, 748, 796
DdeI CTNAG 2 cut(s) 17, 310
DinI GGCGCC 1 cut(s) 894
DpnI GATC 4 cut(s) 79, 84, 545, 801
DpnII GATC 4 cut(s) 77, 82, 543, 799
DraI TTTAAA 1 cut(s) 784
EaeI YGGCCR 2 cut(s) 668, 772
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
EciI GGCGGA 1 cut(s) 472
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco31I GGTCTC 3 cut(s) 448, 558, 617
Eco32I GATATC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 288
Eco72I CACGTG 3 cut(s) 333, 427, 438
Eco88I CYCGRG 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 670
EcoRV GATATC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 290
EgeI GGCGCC 1 cut(s) 894
EheI GGCGCC 1 cut(s) 894
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 4 cut(s) 10, 478, 669, 779
FaqI GGGAC 1 cut(s) 541
FatI CATG 4 cut(s) 6, 474, 665, 775
FauI CCCGC 2 cut(s) 142, 915
FauNDI CATATG 1 cut(s) 87
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 1 cut(s) 290
FspBI CTAG 1 cut(s) 831
GlaI GCGC 4 cut(s) 117, 316, 487, 894
GsuI CTGGAG 1 cut(s) 616
HaeII RGCGCY 3 cut(s) 119, 489, 896
HaeIII GGCC 2 cut(s) 670, 774
HapII CCGG 5 cut(s) 41, 63, 205, 483, 525
HhaI GCGC 4 cut(s) 118, 317, 488, 895
Hin1I GRCGYC 1 cut(s) 893
Hin1II CATG 4 cut(s) 10, 478, 669, 779
Hin6I GCGC 4 cut(s) 116, 315, 486, 893
HinP1I GCGC 4 cut(s) 116, 315, 486, 893
HinfI GANTC 3 cut(s) 133, 176, 789
HpaII CCGG 5 cut(s) 41, 63, 205, 483, 525
HphI GGTGA 2 cut(s) 41, 772
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 6 cut(s) 82, 128, 181, 197, 281, 841
Hpy188III TCNNGA 6 cut(s) 75, 256, 321, 338, 622, 902
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 815
HpyCH4III ACNGT 4 cut(s) 95, 277, 344, 959
HpyCH4IV ACGT 4 cut(s) 168, 332, 426, 437
HpyCH4V TGCA 3 cut(s) 101, 396, 847
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 110, 113, 399, 475, 752
HpyF3I CTNAG 2 cut(s) 17, 310
HpySE526I ACGT 4 cut(s) 168, 332, 426, 437
Hsp92I GRCGYC 1 cut(s) 893
Hsp92II CATG 4 cut(s) 10, 478, 669, 779
HspAI GCGC 4 cut(s) 116, 315, 486, 893
KasI GGCGCC 1 cut(s) 892
Kzo9I GATC 4 cut(s) 77, 82, 543, 799
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 2 cut(s) 43, 635
Lsp1109I GCAGC 6 cut(s) 91, 113, 172, 380, 436, 698
LweI GCATC 1 cut(s) 326
MaeI CTAG 1 cut(s) 831
MaeII ACGT 4 cut(s) 168, 332, 426, 437
MaeIII GTNAC 1 cut(s) 712
MalI GATC 4 cut(s) 79, 84, 545, 801
MboI GATC 4 cut(s) 77, 82, 543, 799
MboII GAAGA 5 cut(s) 185, 239, 370, 442, 544
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 290, 437
MlsI TGGCCA 1 cut(s) 670
MluI ACGCGT 1 cut(s) 744
MluNI TGGCCA 1 cut(s) 670
Mly113I GGCGCC 1 cut(s) 893
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 5 cut(s) 106, 204, 259, 518, 819
Mox20I TGGCCA 1 cut(s) 670
MroXI GAANNNNTTC 1 cut(s) 825
MscI TGGCCA 1 cut(s) 670
MseI TTAA 3 cut(s) 186, 783, 961
MslI CAYNNNNRTG 1 cut(s) 852
Msp20I TGGCCA 1 cut(s) 670
MspA1I CMGCKG 2 cut(s) 104, 689
MspI CCGG 5 cut(s) 41, 63, 205, 483, 525
MspR9I CCNGG 2 cut(s) 526, 672
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 1 cut(s) 746
MwoI GCNNNNNNNGC 6 cut(s) 107, 110, 113, 399, 475, 752
NarI GGCGCC 1 cut(s) 893
NciI CCSGG 1 cut(s) 526
NdeI CATATG 1 cut(s) 87
NdeII GATC 4 cut(s) 77, 82, 543, 799
NlaIII CATG 4 cut(s) 10, 478, 669, 779
NlaIV GGNNCC 3 cut(s) 79, 325, 894
NmeAIII GCCGAG 3 cut(s) 433, 564, 869
PciSI GCTCTTC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 4 cut(s) 281, 503, 512, 536
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 2 cut(s) 133, 789
PflMI CCANNNNNTGG 2 cut(s) 500, 757
PfoI TCCNGGA 1 cut(s) 524
PleI GAGTC 1 cut(s) 170
PluTI GGCGCC 1 cut(s) 896
PmaCI CACGTG 3 cut(s) 333, 427, 438
PmlI CACGTG 3 cut(s) 333, 427, 438
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 3 cut(s) 333, 427, 438
PshAI GACNNNNGTC 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 670
PspCI CACGTG 3 cut(s) 333, 427, 438
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 3 cut(s) 79, 325, 894
PsuI RGATCY 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 5 cut(s) 154, 262, 743, 749, 797
RsaNI GTAC 5 cut(s) 153, 261, 742, 748, 796
RseI CAYNNNNRTG 1 cut(s) 852
SacI GAGCTC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 3 cut(s) 186, 783, 961
Sau3AI GATC 4 cut(s) 77, 82, 543, 799
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 526, 672
SduI GDGCHC 2 cut(s) 290, 437
SfaNI GCATC 1 cut(s) 326
SfoI GGCGCC 1 cut(s) 894
SmiMI CAYNNNNRTG 1 cut(s) 852
SspDI GGCGCC 1 cut(s) 892
SspMI CTAG 1 cut(s) 831
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 524, 670
TaaI ACNGT 4 cut(s) 95, 277, 344, 959
TaiI ACGT 4 cut(s) 171, 335, 429, 440
TaqI TCGA 4 cut(s) 290, 515, 621, 903
TatI WGTACW 1 cut(s) 260
TauI GCSGC 5 cut(s) 110, 113, 116, 692, 774
TfiI GAWTC 2 cut(s) 133, 789
Tru1I TTAA 3 cut(s) 186, 783, 961
Tru9I TTAA 3 cut(s) 186, 783, 961
TscAI CASTG 1 cut(s) 726
TseI GCWGC 6 cut(s) 101, 104, 160, 393, 449, 686
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 660, 891
TspRI CASTG 1 cut(s) 726
Van91I CCANNNNNTGG 2 cut(s) 500, 757
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 1 cut(s) 831
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.