Rh5CG371800

Protein LATERAL ROOT PRIMORDIUM

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
47683598 .. 47688620
5023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG371800.1

Sequence Viewer

Length: 1203 bp
ATGTGGTCGTCATCATCAGGCCCTTCCAGGCCCATCAACTACGGCTTCCCACCGGAGATGGGTATGCTCGGCCTTCGAGACGTCTTCCTTGTTGCTCCAGCTGCAGCCTACCACAATCACCCGCACCACCACCATCAACAAGACCTTCTCTCATCTGATCATAATTCCATGAATGGCTCTAATCCCGCCACAGCTCTCGGCGTCGGCGTCATTCCACTCCTCACCACCACCCCTTGCCTGGGCCCTCCCAATACCAACATGAATGATGACAATGATGATGATGATGATGATGATGATCACAACATGCTGAGCGGTCGCAACAGAAACAGTGCAGGTGGAGGAGGAGGAAGTATTCACTTGTGGCAGCAGCCGACCCAGCAACAACACCAACTTTTCCTCAAGAAAAACCAGAACCTTCACGGTGGCGCCCATTTGATGGTTCCAGGTGGTGGTGGGAATTTTGGTGCCTCGGCGGCATCGGCATCGTCGGCTCTCACTTGTCAAGACTGCGGGAACCAGGCCAAGAAAGACTGCAGTCATCGGCGGTGCAGGACATGCTGCAAGAGCCGTGGTTTTGATTGTGCCACGCACGTGAAGAGCACGTGGGTCCCAGCGGCTAGACGTAGGGAGCGGCAGCTCATGTCCGAGGGAGTGGCGGCGGCGGCCGGGTCTTCTGCGTCTACCTCTCACACTAATAATACTAGTTGCAATGCCAAAAAACCAAGACTGGTTACTTCGCAAAACACAACTCCCTCTCATACTAACTCCACTTCAAACACTACGCCACCCAGAAGCTATGACAGTACCTCCAAACTCCAACACCAAGATGGTGGTTTTCCAGAGACGATGCCGGGCCAAGTGCGGGCGCCAGCGGTTTTTAAGTGCGTTCGAGTAACGGCCGTGGATGATGGTGCAGAGGATGAGTATGCCTATCACGCTGTCGTCAAAATCAACGGTCATGTGTTTAAGGGGTTCTTGTATGATCAAGGGGTTGAAGGTCAAGGTAGAAATCATCATGGCTTCCCTAATATTTCTGATTTGCATTTGGGTGGTAGAAGCGGAGGTGCCACTAGTACCCCAACTGGAAGAAATGGAGGTGCTCCAATACTCGACCCCGCGGATGCTTATGCAGCCGCTGCAGCGGCCTCCACTAGTAGAGGATTGCTGCTGGGAGGGTCAAACTTTGGTAACTCAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

400

Amino Acids

42.09

Weight (kDa)

7.34

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 165 - 332 5.6e-60 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009808)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 4 cut(s) 425, 464, 865, 1064
AccB7I CCANNNNNTGG 2 cut(s) 436, 449
AccBSI CCGCTC 2 cut(s) 312, 631
AccI GTMKAC 1 cut(s) 680
AccII CGCG 1 cut(s) 1118
AcoI YGGCCR 2 cut(s) 663, 897
AcsI RAATTY 1 cut(s) 457
AcvI CACGTG 2 cut(s) 592, 603
AcyI GRCGYC 5 cut(s) 81, 201, 207, 426, 866
AfaI GTAC 2 cut(s) 805, 1075
AfiI CCNNNNNNNGG 6 cut(s) 59, 238, 239, 436, 449, 862
AgsI TTSAA 2 cut(s) 774, 995
AhlI ACTAGT 3 cut(s) 701, 1070, 1151
AjnI CCWGG 4 cut(s) 26, 237, 442, 516
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 4 cut(s) 101, 194, 637, 795
AluI AGCT 4 cut(s) 101, 194, 637, 795
Alw21I GWGCWC 2 cut(s) 602, 1102
Alw26I GTCTC 2 cut(s) 72, 836
AlwNI CAGNNNCTG 1 cut(s) 1136
AoxI GGCC 9 cut(s) 19, 29, 70, 241, 519, 663, 853, 897, 1143
ApaI GGGCCC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 457
AspLEI GCGC 2 cut(s) 428, 868
AspS9I GGNCC 6 cut(s) 20, 30, 241, 242, 607, 853
AsuC2I CCSGG 2 cut(s) 667, 852
AsuHPI GGTGA 2 cut(s) 110, 214
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 4 cut(s) 425, 464, 865, 1064
BanII GRGCYC 1 cut(s) 245
BbrPI CACGTG 2 cut(s) 592, 603
BbsI GAAGAC 2 cut(s) 76, 663
Bbv12I GWGCWC 2 cut(s) 602, 1102
BccI CCATC 6 cut(s) 41, 52, 141, 430, 821, 902
BceAI ACGGC 4 cut(s) 58, 552, 884, 912
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BciT130I CCWGG 4 cut(s) 28, 239, 444, 518
BclI TGATCA 3 cut(s) 157, 295, 982
BcnI CCSGG 2 cut(s) 667, 852
BcoDI GTCTC 2 cut(s) 72, 836
BcuI ACTAGT 3 cut(s) 701, 1070, 1151
BfaI CTAG 4 cut(s) 618, 702, 1071, 1152
BfmI CTRYAG 3 cut(s) 102, 532, 1137
BfoI RGCGCY 2 cut(s) 429, 869
BfuAI ACCTGC 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 473
BlpI GCTNAGC 1 cut(s) 308
Bme1390I CCNGG 6 cut(s) 28, 239, 444, 518, 667, 852
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 6 cut(s) 20, 30, 241, 242, 607, 853
BmiI GGNNCC 9 cut(s) 243, 427, 441, 466, 515, 608, 609, 867, 1066
BmrFI CCNGG 6 cut(s) 28, 239, 444, 518, 667, 852
BmsI GCATC 4 cut(s) 485, 491, 837, 1111
BoxI GACNNNNGTC 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 76, 663
BpmI CTGGAG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 667, 852
BsaAI YACGTR 2 cut(s) 592, 603
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 5 cut(s) 81, 201, 207, 426, 866
BsaJI CCNNGG 6 cut(s) 238, 468, 568, 645, 900, 1116
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 238, 239, 436, 449, 862
Bse1I ACTGG 2 cut(s) 732, 1087
Bse3DI GCAATG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 4 cut(s) 28, 239, 444, 518
BseDI CCNNGG 6 cut(s) 238, 468, 568, 645, 900, 1116
BseGI GGATG 3 cut(s) 910, 925, 1126
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 6 cut(s) 59, 238, 239, 436, 449, 862
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 2 cut(s) 732, 1087
BseRI GAGGAG 3 cut(s) 209, 354, 357
BseSI GKGCMC 1 cut(s) 245
BseX3I CGGCCG 2 cut(s) 663, 897
BseYI CCCAGC 3 cut(s) 375, 610, 1168
BsgI GTGCAG 3 cut(s) 351, 568, 933
Bsh1236I CGCG 1 cut(s) 1118
Bsh1285I CGRYCG 3 cut(s) 316, 666, 900
BshFI GGCC 9 cut(s) 21, 31, 72, 243, 521, 665, 855, 899, 1145
BshNI GGYRCC 4 cut(s) 425, 464, 865, 1064
BsiEI CGRYCG 3 cut(s) 316, 666, 900
BsiHKAI GWGCWC 2 cut(s) 602, 1102
BsiSI CCGG 3 cut(s) 53, 666, 851
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 6 cut(s) 59, 238, 239, 436, 449, 862
BsmAI GTCTC 2 cut(s) 72, 836
BsmBI CGTCTC 2 cut(s) 72, 836
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 9 cut(s) 21, 31, 72, 243, 521, 665, 855, 899, 1145
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 3 cut(s) 245, 602, 1102
Bsp143I GATC 3 cut(s) 157, 295, 982
Bsp1720I GCTNAGC 1 cut(s) 308
BspANI GGCC 9 cut(s) 21, 31, 72, 243, 521, 665, 855, 899, 1145
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 1 cut(s) 1118
BspLI GGNNCC 9 cut(s) 243, 427, 441, 466, 515, 608, 609, 867, 1066
BspMAI CTGCAG 3 cut(s) 106, 536, 1141
BspMI ACCTGC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 4 cut(s) 425, 464, 865, 1064
BsrBI CCGCTC 2 cut(s) 312, 631
BsrDI GCAATG 1 cut(s) 715
BsrI ACTGG 2 cut(s) 732, 1087
BssECI CCNNGG 6 cut(s) 238, 468, 568, 645, 900, 1116
BssMI GATC 3 cut(s) 157, 295, 982
BssNI GRCGYC 5 cut(s) 81, 201, 207, 426, 866
Bst2UI CCWGG 4 cut(s) 28, 239, 444, 518
Bst4CI ACNGT 4 cut(s) 329, 422, 803, 956
Bst6I CTCTTC 1 cut(s) 590
BstACI GRCGYC 5 cut(s) 81, 201, 207, 426, 866
BstAPI GCANNNNNTGC 2 cut(s) 555, 1136
BstBAI YACGTR 2 cut(s) 592, 603
BstC8I GCNNGC 2 cut(s) 864, 870
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 3 cut(s) 568, 900, 1116
BstF5I GGATG 3 cut(s) 910, 925, 1126
BstFNI CGCG 1 cut(s) 1118
BstH2I RGCGCY 2 cut(s) 429, 869
BstHHI GCGC 2 cut(s) 428, 868
BstKTI GATC 3 cut(s) 160, 298, 985
BstMAI GTCTC 2 cut(s) 72, 836
BstMBI GATC 3 cut(s) 157, 295, 982
BstMCI CGRYCG 3 cut(s) 316, 666, 900
BstNI CCWGG 4 cut(s) 28, 239, 444, 518
BstNSI RCATGY 2 cut(s) 307, 558
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 6 cut(s) 26, 237, 442, 516, 665, 850
BstSFI CTRYAG 3 cut(s) 102, 532, 1137
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 1 cut(s) 1118
BstV2I GAAGAC 2 cut(s) 76, 663
BstXI CCANNNNNNTGG 1 cut(s) 830
BstZI CGGCCG 2 cut(s) 663, 897
BsuRI GGCC 9 cut(s) 21, 31, 72, 243, 521, 665, 855, 899, 1145
BtgI CCRYGG 3 cut(s) 568, 900, 1116
BtsCI GGATG 3 cut(s) 910, 925, 1126
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 864, 870
CaiI CAGNNNCTG 1 cut(s) 1136
CfoI GCGC 2 cut(s) 428, 868
Cfr13I GGNCC 6 cut(s) 20, 30, 241, 242, 607, 853
Cfr42I CCGCGG 1 cut(s) 1119
CseI GACGC 3 cut(s) 190, 196, 666
Csp6I GTAC 2 cut(s) 804, 1074
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 7 cut(s) 169, 259, 304, 555, 640, 959, 1016
CviQI GTAC 2 cut(s) 804, 1074
DdeI CTNAG 1 cut(s) 308
DinI GGCGCC 2 cut(s) 427, 867
DpnI GATC 3 cut(s) 159, 297, 984
DpnII GATC 3 cut(s) 157, 295, 982
EaeI YGGCCR 2 cut(s) 663, 897
EagI CGGCCG 2 cut(s) 663, 897
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
EclXI CGGCCG 2 cut(s) 663, 897
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 607
Eco52I CGGCCG 2 cut(s) 663, 897
Eco72I CACGTG 2 cut(s) 592, 603
EcoO109I RGGNCCY 3 cut(s) 20, 242, 607
EcoRII CCWGG 4 cut(s) 26, 237, 442, 516
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 2 cut(s) 427, 867
EheI GGCGCC 2 cut(s) 427, 867
Esp3I CGTCTC 2 cut(s) 72, 836
FaeI CATG 7 cut(s) 172, 262, 307, 558, 643, 962, 1019
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FaqI GGGAC 1 cut(s) 593
FatI CATG 7 cut(s) 168, 258, 303, 554, 639, 958, 1015
FauI CCCGC 5 cut(s) 129, 193, 503, 855, 1123
FbaI TGATCA 3 cut(s) 157, 295, 982
FblI GTMKAC 1 cut(s) 680
FokI GGATG 3 cut(s) 917, 932, 1133
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 4 cut(s) 618, 702, 1071, 1152
GlaI GCGC 2 cut(s) 427, 867
GsaI CCCAGC 3 cut(s) 379, 614, 1172
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 2 cut(s) 429, 869
HaeIII GGCC 9 cut(s) 21, 31, 72, 243, 521, 665, 855, 899, 1145
HapII CCGG 3 cut(s) 53, 666, 851
HgaI GACGC 3 cut(s) 190, 196, 666
HhaI GCGC 2 cut(s) 428, 868
Hin1I GRCGYC 5 cut(s) 81, 201, 207, 426, 866
Hin1II CATG 7 cut(s) 172, 262, 307, 558, 643, 962, 1019
Hin6I GCGC 2 cut(s) 426, 866
HinP1I GCGC 2 cut(s) 426, 866
HpaII CCGG 3 cut(s) 53, 666, 851
HphI GGTGA 2 cut(s) 110, 214
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 3 cut(s) 157, 646, 1036
Hpy188III TCNNGA 4 cut(s) 77, 400, 503, 839
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 2 cut(s) 206, 490
HpyAV CCTTC 5 cut(s) 33, 83, 155, 425, 989
HpyCH4III ACNGT 4 cut(s) 329, 422, 803, 956
HpyCH4IV ACGT 4 cut(s) 81, 591, 602, 622
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 4 cut(s) 81, 591, 602, 622
Hsp92I GRCGYC 5 cut(s) 81, 201, 207, 426, 866
Hsp92II CATG 7 cut(s) 172, 262, 307, 558, 643, 962, 1019
HspAI GCGC 2 cut(s) 426, 866
KasI GGCGCC 2 cut(s) 425, 865
KflI GGGWCCC 1 cut(s) 607
Ksp22I TGATCA 3 cut(s) 157, 295, 982
KspI CCGCGG 1 cut(s) 1119
Kzo9I GATC 3 cut(s) 157, 295, 982
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 3 cut(s) 100, 628, 1105
LweI GCATC 4 cut(s) 485, 491, 837, 1111
MaeI CTAG 4 cut(s) 618, 702, 1071, 1152
MaeII ACGT 4 cut(s) 81, 591, 602, 622
MaeIII GTNAC 3 cut(s) 730, 892, 1187
MalI GATC 3 cut(s) 159, 297, 984
MbiI CCGCTC 2 cut(s) 312, 631
MboI GATC 3 cut(s) 157, 295, 982
MboII GAAGA 4 cut(s) 76, 607, 663, 1098
MhlI GDGCHC 3 cut(s) 245, 602, 1102
MluCI AATT 3 cut(s) 163, 457, 1198
Mly113I GGCGCC 2 cut(s) 426, 866
MmeI TCCRAC 1 cut(s) 841
MseI TTAA 3 cut(s) 879, 966, 1201
MslI CAYNNNNRTG 3 cut(s) 590, 825, 1047
MspA1I CMGCKG 6 cut(s) 101, 614, 872, 1118, 1136, 1142
MspI CCGG 3 cut(s) 53, 666, 851
MspR9I CCNGG 6 cut(s) 28, 239, 444, 518, 667, 852
MvaI CCWGG 4 cut(s) 28, 239, 444, 518
MvnI CGCG 1 cut(s) 1118
NarI GGCGCC 2 cut(s) 426, 866
NciI CCSGG 2 cut(s) 667, 852
NdeII GATC 3 cut(s) 157, 295, 982
NlaIII CATG 7 cut(s) 172, 262, 307, 558, 643, 962, 1019
NlaIV GGNNCC 9 cut(s) 243, 427, 441, 466, 515, 608, 609, 867, 1066
NmeAIII GCCGAG 3 cut(s) 48, 177, 449
NspI RCATGY 2 cut(s) 307, 558
OliI CACNNNNGTG 1 cut(s) 590
PaqCI CACCTGC 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PflMI CCANNNNNTGG 2 cut(s) 436, 449
PluTI GGCGCC 2 cut(s) 429, 869
PmaCI CACGTG 2 cut(s) 592, 603
PmlI CACGTG 2 cut(s) 592, 603
Ppu21I YACGTR 2 cut(s) 592, 603
PpuMI RGGWCCY 1 cut(s) 607
PshAI GACNNNNGTC 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 4 cut(s) 26, 237, 442, 516
PspCI CACGTG 2 cut(s) 592, 603
PspFI CCCAGC 3 cut(s) 375, 610, 1168
PspGI CCWGG 4 cut(s) 26, 237, 442, 516
PspN4I GGNNCC 9 cut(s) 243, 427, 441, 466, 515, 608, 609, 867, 1066
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 6 cut(s) 20, 30, 241, 242, 607, 853
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 3 cut(s) 106, 536, 1141
PstNI CAGNNNCTG 1 cut(s) 1136
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 805, 1075
RsaNI GTAC 2 cut(s) 804, 1074
RseI CAYNNNNRTG 3 cut(s) 590, 825, 1047
SacII CCGCGG 1 cut(s) 1119
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 3 cut(s) 879, 966, 1201
Sau3AI GATC 3 cut(s) 157, 295, 982
Sau96I GGNCC 6 cut(s) 20, 30, 241, 242, 607, 853
ScrFI CCNGG 6 cut(s) 28, 239, 444, 518, 667, 852
SduI GDGCHC 3 cut(s) 245, 602, 1102
SfaNI GCATC 4 cut(s) 485, 491, 837, 1111
SfcI CTRYAG 3 cut(s) 102, 532, 1137
SfoI GGCGCC 2 cut(s) 427, 867
Sfr303I CCGCGG 1 cut(s) 1119
SgrBI CCGCGG 1 cut(s) 1119
SinI GGWCC 1 cut(s) 607
SmiMI CAYNNNNRTG 3 cut(s) 590, 825, 1047
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 3 cut(s) 701, 1070, 1151
Sse9I AATT 3 cut(s) 163, 457, 1198
SspDI GGCGCC 2 cut(s) 425, 865
SspI AATATT 1 cut(s) 1030
SspMI CTAG 4 cut(s) 618, 702, 1071, 1152
StyD4I CCNGG 6 cut(s) 26, 237, 442, 516, 665, 850
TaaI ACNGT 4 cut(s) 329, 422, 803, 956
TaiI ACGT 4 cut(s) 84, 594, 605, 625
TaqI TCGA 3 cut(s) 76, 889, 1110
TasI AATT 3 cut(s) 163, 457, 1198
TauI GCSGC 8 cut(s) 476, 617, 634, 659, 662, 665, 1136, 1145
Tru1I TTAA 3 cut(s) 879, 966, 1201
Tru9I TTAA 3 cut(s) 879, 966, 1201
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 185, 275
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 436, 449
VpaK11BI GGWCC 1 cut(s) 607
XapI RAATTY 1 cut(s) 457
XceI RCATGY 2 cut(s) 307, 558
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 824
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 4 cut(s) 618, 702, 1071, 1152
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.