MD03G1166900.v1.1

Protein LATERAL ROOT PRIMORDIUM

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
22344771 .. 22346671
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1166900.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGTCCATGTGGTCCTCCGCCCCTTCCAACAGACCCCTCACCTACGGCCACCTCCCTCCCGAGATGGCCGGCATGGTCGGCCTCCGCGACGTCTTTGTCGTTGCCCCAGCCGCCGCCTACCACCTCGGCCACGACCCCAATCTCCTCTCCTCCTCCGACCATCACCACTCCATCAATGCCTCCAACAACCCCGCACCCGCTCTTGGTGTCGGCGTCGGTGTCATTCCTCTTCTCACAGCAACCCCTTGTCTCGCCCCACCTAATATGTCAAATGTCGATGACGATGACGAAGACACTCACACACCTGCGGGTATGAGCATGGGAATGGGAATGAGTATGAGTATGATGAGTGGCGGCCATCAGCGCAACAACAGAAGCTCCTCAGCAGCAGGAGGGGGAGGGATTCAATTGTGGCAGCAGAACCCGCCACATTTCTTCAAGAAAAATCATCATGAGGCCGCCGTTACTACTAATCTAGGCGGGATCCACTTAAACCAAGATGGAGGTGGTGGAGGAAGAGGCGGTGGTGGCGGCGGGGGAGGGAATAACATTATGAACGCTGGGTCTGCTGCTGCATCGTCGGGGTCGTCCACCATGACGTGTCAAGACTGCGGGAACCAGGCCAAGAAGGATTGTACGCACCGGCGGTGCAGGACGTGCTGCAAGAGCCGGGGTTTCGACTGTGCGACTCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCAGGGAGCGGCAGCTCATGTCTGCAGCGGCTGGTGGTGGGGCTGGGTCTAATTCTGGGTCTACTTCTAGTGCCAAGAAGCCTAGACTGGTTGGCGCCTCTCAAACCACTCCTTCTCACACTTCCACTTCCAACACTACTCCCCCTAGAAGCTACGACACTAGTTCTAGTCACCAAGATGCTGGTTTCAAAGATCCACTGCCGGGACAAGTACGTGCCCCAGCGGTTTTCAAGTGTGTTCGAGTGACTGCCGTGGAGGACGGCGAGGATGAGTACGCATATCAGGCCGTTGTCAAAATTAACGGTCATGTGTTCAAAGGCTTCTTGCATGATCAAGGAGTTGATGGTAGAGAAGGGTTTCCTGACATCTCTGAATTGCATCTGGGGGGTGGTGGCACTACTAGTGGTGGCAATGGCGGAAGAAATGGGGCTTCTTCTCCGATTCTTGACCCGTCGGATATTTATGCCGCGTCTGGTGCAGGATTGCTGGGAGGTTCAAACTTTGGTAATCCAATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

42.35

Weight (kDa)

7.3

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 198 - 356 1.1e-60 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009808)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
AasI GACNNNNNNGTC 1 cut(s) 95
AatII GACGTC 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 2 cut(s) 709, 818
AccBSI CCGCTC 2 cut(s) 200, 733
AccI GTMKAC 1 cut(s) 785
AccII CGCG 2 cut(s) 87, 1193
AclWI GGATC 3 cut(s) 478, 491, 911
AcoI YGGCCR 4 cut(s) 46, 66, 127, 355
AcvI CACGTG 2 cut(s) 694, 705
AcyI GRCGYC 3 cut(s) 90, 213, 819
AfaI GTAC 3 cut(s) 637, 936, 998
AfiI CCNNNNNNNGG 2 cut(s) 203, 926
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 6 cut(s) 407, 439, 913, 955, 1039, 1221
AhlI ACTAGT 2 cut(s) 884, 1124
AjiI CACGTC 2 cut(s) 600, 657
AjnI CCWGG 1 cut(s) 618
AleI CACNNNNGTG 1 cut(s) 707
AluBI AGCT 3 cut(s) 378, 739, 876
AluI AGCT 3 cut(s) 378, 739, 876
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 3 cut(s) 478, 491, 911
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 8 cut(s) 46, 66, 79, 127, 355, 456, 621, 1008
ApeKI GCWGC 7 cut(s) 386, 415, 569, 572, 660, 736, 749
Asp700I GAANNNNTTC 1 cut(s) 1080
AspLEI GCGC 3 cut(s) 366, 726, 821
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 671, 927
AsuHPI GGTGA 3 cut(s) 31, 155, 887
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 943
BamHI GGATCC 1 cut(s) 483
BanI GGYRCC 2 cut(s) 709, 818
BbrPI CACGTG 2 cut(s) 694, 705
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 704
BbvCI CCTCAGC 1 cut(s) 382
BbvI GCAGC 7 cut(s) 398, 427, 556, 559, 647, 748, 761
BccI CCATC 6 cut(s) 58, 168, 179, 366, 494, 1061
BceAI ACGGC 5 cut(s) 61, 446, 959, 995, 1000
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 2 cut(s) 671, 927
BcoDI GTCTC 1 cut(s) 254
BcuI ACTAGT 2 cut(s) 884, 1124
BfaI CTAG 7 cut(s) 476, 792, 807, 870, 885, 891, 1125
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 822
BfuAI ACCTGC 1 cut(s) 313
Bme1390I CCNGG 3 cut(s) 620, 671, 927
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 59
BmgBI CACGTC 2 cut(s) 600, 657
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 4 cut(s) 485, 617, 711, 820
BmrFI CCNGG 3 cut(s) 620, 671, 927
BmsI GCATC 3 cut(s) 584, 892, 1111
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 382
BpuMI CCSGG 2 cut(s) 671, 927
BsaAI YACGTR 3 cut(s) 694, 705, 938
BsaHI GRCGYC 3 cut(s) 90, 213, 819
BsaJI CCNNGG 3 cut(s) 124, 670, 975
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 926
Bse118I RCCGGY 3 cut(s) 68, 642, 712
Bse1I ACTGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 1141
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 3 cut(s) 124, 670, 975
BseGI GGATG 1 cut(s) 997
BseLI CCNNNNNNNGG 2 cut(s) 203, 926
BseMI GCAATG 1 cut(s) 1141
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 816
BseRI GAGGAG 4 cut(s) 134, 139, 142, 370
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 7 cut(s) 398, 427, 556, 559, 647, 748, 761
BseYI CCCAGC 5 cut(s) 106, 560, 767, 943, 1210
BsgI GTGCAG 2 cut(s) 670, 1221
Bsh1236I CGCG 2 cut(s) 87, 1193
BshFI GGCC 8 cut(s) 48, 68, 81, 129, 357, 458, 623, 1010
BshNI GGYRCC 2 cut(s) 709, 818
BsiHKAI GWGCWC 1 cut(s) 704
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 5 cut(s) 69, 643, 670, 713, 926
BslFI GGGAC 1 cut(s) 942
BslI CCNNNNNNNGG 2 cut(s) 203, 926
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 942
BsnI GGCC 8 cut(s) 48, 68, 81, 129, 357, 458, 623, 1010
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 704, 943
Bsp143I GATC 3 cut(s) 483, 916, 1054
BspANI GGCC 8 cut(s) 48, 68, 81, 129, 357, 458, 623, 1010
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 2 cut(s) 87, 1193
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 4 cut(s) 485, 617, 711, 820
BspMAI CTGCAG 1 cut(s) 751
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 478, 491, 911
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 2 cut(s) 709, 818
BsrBI CCGCTC 2 cut(s) 200, 733
BsrDI GCAATG 1 cut(s) 1141
BsrFI RCCGGY 3 cut(s) 68, 642, 712
BsrI ACTGG 1 cut(s) 816
BssAI RCCGGY 3 cut(s) 68, 642, 712
BssECI CCNNGG 3 cut(s) 124, 670, 975
BssMI GATC 3 cut(s) 483, 916, 1054
BssNI GRCGYC 3 cut(s) 90, 213, 819
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 2 cut(s) 683, 1028
Bst6I CTCTTC 3 cut(s) 234, 511, 692
BstACI GRCGYC 3 cut(s) 90, 213, 819
BstAPI GCANNNNNTGC 1 cut(s) 657
BstBAI YACGTR 3 cut(s) 694, 705, 938
BstC8I GCNNGC 2 cut(s) 70, 714
BstDEI CTNAG 1 cut(s) 382
BstDSI CCRYGG 1 cut(s) 975
BstF5I GGATG 1 cut(s) 997
BstFNI CGCG 2 cut(s) 87, 1193
BstH2I RGCGCY 1 cut(s) 822
BstHHI GCGC 3 cut(s) 366, 726, 821
BstKTI GATC 3 cut(s) 486, 919, 1057
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 483, 916, 1054
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 618, 669, 925
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 2 cut(s) 87, 1193
BstV1I GCAGC 7 cut(s) 398, 427, 556, 559, 647, 748, 761
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 2 cut(s) 483, 916
BstXI CCANNNNNNTGG 1 cut(s) 905
BstYI RGATCY 2 cut(s) 483, 916
BsuRI GGCC 8 cut(s) 48, 68, 81, 129, 357, 458, 623, 1010
BtgI CCRYGG 1 cut(s) 975
BtrI CACGTC 2 cut(s) 600, 657
BtsCI GGATG 1 cut(s) 997
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 1 cut(s) 920
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 70, 714
CaiI CAGNNNCTG 1 cut(s) 755
CciI TCATGA 1 cut(s) 451
CfoI GCGC 3 cut(s) 366, 726, 821
Cfr10I RCCGGY 3 cut(s) 68, 642, 712
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 2 cut(s) 202, 1182
Csp6I GTAC 3 cut(s) 636, 935, 997
CviAII CATG 8 cut(s) 7, 73, 319, 452, 595, 742, 1031, 1052
CviQI GTAC 3 cut(s) 636, 935, 997
DdeI CTNAG 1 cut(s) 382
DinI GGCGCC 1 cut(s) 820
DpnI GATC 3 cut(s) 485, 918, 1056
DpnII GATC 3 cut(s) 483, 916, 1054
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 4 cut(s) 46, 66, 127, 355
Eam1104I CTCTTC 3 cut(s) 234, 511, 692
EarI CTCTTC 3 cut(s) 234, 511, 692
EciI GGCGGA 2 cut(s) 7, 1155
Eco47I GGWCC 1 cut(s) 12
Eco72I CACGTG 2 cut(s) 694, 705
Eco88I CYCGRG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 618
EgeI GGCGCC 1 cut(s) 820
EheI GGCGCC 1 cut(s) 820
FaeI CATG 8 cut(s) 10, 76, 322, 455, 598, 745, 1034, 1055
FaqI GGGAC 1 cut(s) 942
FatI CATG 8 cut(s) 6, 72, 318, 451, 594, 741, 1030, 1051
FauI CCCGC 7 cut(s) 199, 205, 301, 432, 473, 527, 605
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 785
FokI GGATG 1 cut(s) 1004
FspBI CTAG 7 cut(s) 476, 792, 807, 870, 885, 891, 1125
GlaI GCGC 3 cut(s) 365, 725, 820
GsaI CCCAGC 5 cut(s) 110, 564, 771, 947, 1214
HaeII RGCGCY 1 cut(s) 822
HaeIII GGCC 8 cut(s) 48, 68, 81, 129, 357, 458, 623, 1010
HapII CCGG 5 cut(s) 69, 643, 670, 713, 926
HgaI GACGC 2 cut(s) 202, 1182
HhaI GCGC 3 cut(s) 366, 726, 821
Hin1I GRCGYC 3 cut(s) 90, 213, 819
Hin1II CATG 8 cut(s) 10, 76, 322, 455, 598, 745, 1034, 1055
Hin6I GCGC 3 cut(s) 364, 724, 819
HinP1I GCGC 3 cut(s) 364, 724, 819
HinfI GANTC 3 cut(s) 403, 688, 1165
HpaII CCGG 5 cut(s) 69, 643, 670, 713, 926
HphI GGTGA 3 cut(s) 31, 155, 887
Hpy166II GTNNAC 2 cut(s) 591, 786
Hpy188I TCNGA 4 cut(s) 157, 1096, 1164, 1180
Hpy188III TCNNGA 6 cut(s) 59, 439, 452, 605, 1085, 1169
Hpy8I GTNNAC 2 cut(s) 591, 786
Hpy99I CGWCG 4 cut(s) 92, 218, 583, 1180
HpyAV CCTTC 4 cut(s) 33, 622, 846, 1070
HpyCH4III ACNGT 2 cut(s) 683, 1028
HpyCH4IV ACGT 6 cut(s) 90, 599, 656, 693, 704, 937
HpyCH4V TGCA 7 cut(s) 575, 651, 663, 749, 1051, 1102, 1202
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 6 cut(s) 90, 599, 656, 693, 704, 937
Hsp92I GRCGYC 3 cut(s) 90, 213, 819
Hsp92II CATG 8 cut(s) 10, 76, 322, 455, 598, 745, 1034, 1055
HspAI GCGC 3 cut(s) 364, 724, 819
KasI GGCGCC 1 cut(s) 818
KroI GCCGGC 2 cut(s) 68, 712
KroNI GCCGGC 2 cut(s) 70, 714
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 3 cut(s) 483, 916, 1054
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 2 cut(s) 383, 730
Lsp1109I GCAGC 7 cut(s) 398, 427, 556, 559, 647, 748, 761
LweI GCATC 3 cut(s) 584, 892, 1111
MaeI CTAG 7 cut(s) 476, 792, 807, 870, 885, 891, 1125
MaeII ACGT 6 cut(s) 90, 599, 656, 693, 704, 937
MaeIII GTNAC 3 cut(s) 463, 893, 967
MalI GATC 3 cut(s) 485, 918, 1056
MbiI CCGCTC 2 cut(s) 200, 733
MboI GATC 3 cut(s) 483, 916, 1054
MboII GAAGA 7 cut(s) 221, 302, 427, 528, 709, 1149, 1155
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 483, 916
MhlI GDGCHC 2 cut(s) 704, 943
MluCI AATT 5 cut(s) 407, 775, 1020, 1097, 1240
Mly113I GGCGCC 1 cut(s) 819
MlyI GAGTC 1 cut(s) 682
MmeI TCCRAC 5 cut(s) 51, 180, 207, 879, 1158
MroNI GCCGGC 2 cut(s) 68, 712
MroXI GAANNNNTTC 1 cut(s) 1080
MseI TTAA 2 cut(s) 491, 1023
MslI CAYNNNNRTG 3 cut(s) 323, 707, 900
MspA1I CMGCKG 2 cut(s) 752, 947
MspI CCGG 5 cut(s) 69, 643, 670, 713, 926
MspR9I CCNGG 3 cut(s) 620, 671, 927
MunI CAATTG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 2 cut(s) 87, 1193
NaeI GCCGGC 2 cut(s) 70, 714
NarI GGCGCC 1 cut(s) 819
NciI CCSGG 2 cut(s) 671, 927
NdeII GATC 3 cut(s) 483, 916, 1054
NgoMIV GCCGGC 2 cut(s) 68, 712
NlaIII CATG 8 cut(s) 10, 76, 322, 455, 598, 745, 1034, 1055
NlaIV GGNNCC 4 cut(s) 485, 617, 711, 820
NmeAIII GCCGAG 2 cut(s) 105, 700
NmuCI GTSAC 2 cut(s) 893, 967
OliI CACNNNNGTG 1 cut(s) 707
PagI TCATGA 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 692
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 96, 584
PdiI GCCGGC 2 cut(s) 70, 714
PdmI GAANNNNTTC 1 cut(s) 1080
PfeI GAWTC 2 cut(s) 403, 1165
PleI GAGTC 1 cut(s) 682
PluTI GGCGCC 1 cut(s) 822
PmaCI CACGTG 2 cut(s) 694, 705
PmlI CACGTG 2 cut(s) 694, 705
PpsI GAGTC 1 cut(s) 682
Ppu21I YACGTR 3 cut(s) 694, 705, 938
Psp6I CCWGG 1 cut(s) 618
PspCI CACGTG 2 cut(s) 694, 705
PspFI CCCAGC 5 cut(s) 106, 560, 767, 943, 1210
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 4 cut(s) 485, 617, 711, 820
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 483, 916
RsaI GTAC 3 cut(s) 637, 936, 998
RsaNI GTAC 3 cut(s) 636, 935, 997
RseI CAYNNNNRTG 3 cut(s) 323, 707, 900
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 2 cut(s) 491, 1023
Sau3AI GATC 3 cut(s) 483, 916, 1054
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 3 cut(s) 620, 671, 927
SduI GDGCHC 2 cut(s) 704, 943
SfaNI GCATC 3 cut(s) 584, 892, 1111
SfcI CTRYAG 1 cut(s) 747
SfoI GGCGCC 1 cut(s) 820
SgrAI CRCCGGYG 1 cut(s) 642
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 3 cut(s) 323, 707, 900
SpeI ACTAGT 2 cut(s) 884, 1124
Sse9I AATT 5 cut(s) 407, 775, 1020, 1097, 1240
SspDI GGCGCC 1 cut(s) 818
SspMI CTAG 7 cut(s) 476, 792, 807, 870, 885, 891, 1125
StyD4I CCNGG 3 cut(s) 618, 669, 925
TaaI ACNGT 2 cut(s) 683, 1028
TaiI ACGT 6 cut(s) 93, 602, 659, 696, 707, 940
TaqI TCGA 3 cut(s) 276, 678, 964
TasI AATT 5 cut(s) 407, 775, 1020, 1097, 1240
TauI GCSGC 9 cut(s) 113, 116, 357, 461, 534, 719, 736, 755, 1193
TfiI GAWTC 2 cut(s) 403, 1165
Tru1I TTAA 2 cut(s) 491, 1023
Tru9I TTAA 2 cut(s) 491, 1023
TscAI CASTG 1 cut(s) 927
TseFI GTSAC 2 cut(s) 893, 967
TseI GCWGC 7 cut(s) 386, 415, 569, 572, 660, 736, 749
Tsp45I GTSAC 2 cut(s) 893, 967
TspDTI ATGAA 1 cut(s) 569
TspRI CASTG 1 cut(s) 927
VpaK11BI GGWCC 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 1080
XspI CTAG 7 cut(s) 476, 792, 807, 870, 885, 891, 1125
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.