Rw5G031570

Protein LATERAL ROOT PRIMORDIUM

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
52239526 .. 52242074
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031570.1

Sequence Viewer

Length: 1227 bp
ATGTGGTCGTCATCATCAGGCCCTTCCAGGCCCATCAACTACGGCTTCCCACCGGAGATGGGTATGCTCGGCCTTCGAGACGTCTTCCTTGTTGCTCCAGCAGCAGCCTACCACAATCACGCGCACCACCACCACCACCCCCCTCACCATCAACAAGACCTTCTCTCATCTGATCATAATTCCATGAATGGCTCTAATCCCGCCACAGCTCTCGGCGTCGGCGTCATTCCACTCCTCACCACCACCCCTTGCCTGGGCCCTCCCAATACCAACATGAATGATGACAATGATGATGATGATGATCACAACATGCTGAGCGGTCGCAACAGAAACAGTGCAGGTGGAGGAGGAGGAGGAGGAGGAAGTATTCACTTGTGGCAGCAGCCGACCCAGCAACAACACCAACTTTTCCTCAAGAGAAACCAGAACCTTCACGGTGGCGCCCATTTGATGGTTCAAGGTGGTGGTGGTGGGAATTTTGGTGCCTCGGCGGCATCGGCATCGGCATCGTCCGCTCTCACTTGTCAAGACTGCGGGAACCAGGCCAAGAAAGACTGCAGTCATCGGCGGTGCAGGACATGCTGCAAGAGCCGTGGTTTTGATTGTGCCACGCACGTGAAGAGCACGTGGGTCCCAGCGGCTAGACGCAGGGAGCGGCAGCTCATGTCCGAGGGAGTGGCGGCGGCCGGGTCTTCTGCGTCTACCTCGCACACTAATAATACTAGTTCCAATGCCAAAAAACCAAGACTGGTTACCTCGCAAAACACAACTCCCTCTCATACGAACTCCACTTCAAACACTACGCCACCCAGAAGCTATGACAGTACCTCCAAACTCCAGCACCAAGATGGTGGTTTTCCAGAGACAATGCCGGGCCAAGTACGGTTGCCAGCGGTTTTTAAGTGCGTTCGAGTAACGGCCGTGGATGATGGTGCAGAGGGTGAGTATGCCTATCACGCTGTCGTCAAAATCAACGGTCATGTGTTTAAGGGGTTCTTGTATGATCAAGGGGTTGAAGGTCAAGGTAGAGATCATCATGGCTTCCCAAATATTTCTGATTTGCATTTGGGTGGTAGAAGCGGAGGTGCCACTAGTACCCCAACTGGAAGAAATGGAGGTGCTCCAATACTCGACCCCGCGGATGCTTATGCAGCCGCTGCAGCAGCGGCCTCCACTAGTGGAGGATTGCTGCTGGGAGTGTCAAACTTTGGTAACTCAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

42.69

Weight (kDa)

8.11

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 173 - 339 8.5e-60 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009808)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 329
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 329
AccB1I GGYRCC 3 cut(s) 440, 482, 1085
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 3 cut(s) 318, 515, 655
AccI GTMKAC 1 cut(s) 701
AccII CGCG 2 cut(s) 122, 1139
AcoI YGGCCR 2 cut(s) 684, 918
AcsI RAATTY 1 cut(s) 475
AcvI CACGTG 2 cut(s) 616, 627
AcyI GRCGYC 4 cut(s) 81, 216, 222, 441
AfaI GTAC 3 cut(s) 826, 882, 1096
AfiI CCNNNNNNNGG 4 cut(s) 59, 253, 254, 451
AgsI TTSAA 3 cut(s) 458, 795, 1016
AhlI ACTAGT 3 cut(s) 722, 1091, 1175
AjnI CCWGG 3 cut(s) 26, 252, 540
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 3 cut(s) 209, 661, 816
AluI AGCT 3 cut(s) 209, 661, 816
Alw21I GWGCWC 2 cut(s) 626, 1123
Alw26I GTCTC 2 cut(s) 72, 857
AlwNI CAGNNNCTG 1 cut(s) 1157
AoxI GGCC 9 cut(s) 19, 29, 70, 256, 543, 684, 874, 918, 1167
ApaI GGGCCC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 2 cut(s) 124, 443
AspS9I GGNCC 6 cut(s) 20, 30, 256, 257, 631, 874
AsuC2I CCSGG 2 cut(s) 688, 873
AsuHPI GGTGA 3 cut(s) 137, 229, 953
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 3 cut(s) 440, 482, 1085
BanII GRGCYC 1 cut(s) 260
BbrPI CACGTG 2 cut(s) 616, 627
BbsI GAAGAC 2 cut(s) 76, 684
Bbv12I GWGCWC 2 cut(s) 626, 1123
BccI CCATC 6 cut(s) 41, 52, 156, 445, 842, 923
BceAI ACGGC 4 cut(s) 58, 576, 905, 933
BcgI CGANNNNNNTGC 4 cut(s) 483, 489, 517, 523
BciT130I CCWGG 3 cut(s) 28, 254, 542
BclI TGATCA 3 cut(s) 172, 301, 1003
BcnI CCSGG 2 cut(s) 688, 873
BcoDI GTCTC 2 cut(s) 72, 857
BcuI ACTAGT 3 cut(s) 722, 1091, 1175
BfaI CTAG 4 cut(s) 642, 723, 1092, 1176
BfmI CTRYAG 2 cut(s) 556, 1158
BfoI RGCGCY 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 329
BglI GCCNNNNNGGC 1 cut(s) 491
BlpI GCTNAGC 1 cut(s) 314
Bme1390I CCNGG 5 cut(s) 28, 254, 542, 688, 873
Bme18I GGWCC 1 cut(s) 631
BmgT120I GGNCC 6 cut(s) 20, 30, 256, 257, 631, 874
BmiI GGNNCC 7 cut(s) 258, 442, 484, 539, 632, 633, 1087
BmrFI CCNGG 5 cut(s) 28, 254, 542, 688, 873
BmsI GCATC 4 cut(s) 503, 509, 515, 1132
BoxI GACNNNNGTC 1 cut(s) 558
BpiI GAAGAC 2 cut(s) 76, 684
BpmI CTGGAG 2 cut(s) 81, 821
Bpu1102I GCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 2 cut(s) 688, 873
BsaAI YACGTR 2 cut(s) 616, 627
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 4 cut(s) 81, 216, 222, 441
BsaJI CCNNGG 6 cut(s) 253, 486, 592, 669, 921, 1137
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 253, 254, 451
Bse1I ACTGG 2 cut(s) 753, 1108
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 3 cut(s) 28, 254, 542
BseDI CCNNGG 6 cut(s) 253, 486, 592, 669, 921, 1137
BseGI GGATG 2 cut(s) 931, 1147
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 4 cut(s) 59, 253, 254, 451
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 753, 1108
BseRI GAGGAG 6 cut(s) 224, 360, 363, 366, 369, 372
BseSI GKGCMC 1 cut(s) 260
BseX3I CGGCCG 2 cut(s) 684, 918
BseYI CCCAGC 3 cut(s) 390, 634, 1192
BsgI GTGCAG 3 cut(s) 357, 592, 954
Bsh1236I CGCG 2 cut(s) 122, 1139
Bsh1285I CGRYCG 3 cut(s) 322, 687, 921
BshFI GGCC 9 cut(s) 21, 31, 72, 258, 545, 686, 876, 920, 1169
BshNI GGYRCC 3 cut(s) 440, 482, 1085
BsiEI CGRYCG 3 cut(s) 322, 687, 921
BsiHKAI GWGCWC 2 cut(s) 626, 1123
BsiSI CCGG 3 cut(s) 53, 687, 872
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 4 cut(s) 59, 253, 254, 451
BsmAI GTCTC 2 cut(s) 72, 857
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 617
BsnI GGCC 9 cut(s) 21, 31, 72, 258, 545, 686, 876, 920, 1169
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 260, 626, 1123
Bsp143I GATC 4 cut(s) 172, 301, 1003, 1030
Bsp1720I GCTNAGC 1 cut(s) 314
BspANI GGCC 9 cut(s) 21, 31, 72, 258, 545, 686, 876, 920, 1169
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 2 cut(s) 122, 1139
BspLI GGNNCC 7 cut(s) 258, 442, 484, 539, 632, 633, 1087
BspMAI CTGCAG 2 cut(s) 560, 1162
BspMI ACCTGC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 614
BspT107I GGYRCC 3 cut(s) 440, 482, 1085
BsrBI CCGCTC 3 cut(s) 318, 515, 655
BsrI ACTGG 2 cut(s) 753, 1108
BssECI CCNNGG 6 cut(s) 253, 486, 592, 669, 921, 1137
BssMI GATC 4 cut(s) 172, 301, 1003, 1030
BssNI GRCGYC 4 cut(s) 81, 216, 222, 441
Bst2UI CCWGG 3 cut(s) 28, 254, 542
Bst4CI ACNGT 5 cut(s) 335, 437, 824, 885, 977
Bst6I CTCTTC 1 cut(s) 614
BstACI GRCGYC 4 cut(s) 81, 216, 222, 441
BstAPI GCANNNNNTGC 2 cut(s) 579, 1157
BstBAI YACGTR 2 cut(s) 616, 627
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 3 cut(s) 592, 921, 1137
BstEII GGTNACC 1 cut(s) 751
BstF5I GGATG 2 cut(s) 931, 1147
BstFNI CGCG 2 cut(s) 122, 1139
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 2 cut(s) 124, 443
BstKTI GATC 4 cut(s) 175, 304, 1006, 1033
BstMAI GTCTC 2 cut(s) 72, 857
BstMBI GATC 4 cut(s) 172, 301, 1003, 1030
BstMCI CGRYCG 3 cut(s) 322, 687, 921
BstNI CCWGG 3 cut(s) 28, 254, 542
BstNSI RCATGY 2 cut(s) 313, 582
BstPAI GACNNNNGTC 1 cut(s) 558
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 5 cut(s) 26, 252, 540, 686, 871
BstSFI CTRYAG 2 cut(s) 556, 1158
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 2 cut(s) 122, 1139
BstV2I GAAGAC 2 cut(s) 76, 684
BstXI CCANNNNNNTGG 1 cut(s) 851
BstZI CGGCCG 2 cut(s) 684, 918
BsuRI GGCC 9 cut(s) 21, 31, 72, 258, 545, 686, 876, 920, 1169
BtgI CCRYGG 3 cut(s) 592, 921, 1137
BtsCI GGATG 2 cut(s) 931, 1147
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 891
CaiI CAGNNNCTG 1 cut(s) 1157
CfoI GCGC 2 cut(s) 124, 443
Cfr13I GGNCC 6 cut(s) 20, 30, 256, 257, 631, 874
Cfr42I CCGCGG 1 cut(s) 1140
CseI GACGC 4 cut(s) 205, 211, 654, 687
Csp6I GTAC 3 cut(s) 825, 881, 1095
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 7 cut(s) 184, 274, 310, 579, 664, 980, 1037
CviQI GTAC 3 cut(s) 825, 881, 1095
DdeI CTNAG 1 cut(s) 314
DinI GGCGCC 1 cut(s) 442
DpnI GATC 4 cut(s) 174, 303, 1005, 1032
DpnII GATC 4 cut(s) 172, 301, 1003, 1030
EaeI YGGCCR 2 cut(s) 684, 918
EagI CGGCCG 2 cut(s) 684, 918
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
EclXI CGGCCG 2 cut(s) 684, 918
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 631
Eco52I CGGCCG 2 cut(s) 684, 918
Eco72I CACGTG 2 cut(s) 616, 627
Eco91I GGTNACC 1 cut(s) 751
EcoO109I RGGNCCY 3 cut(s) 20, 257, 631
EcoO65I GGTNACC 1 cut(s) 751
EcoRII CCWGG 3 cut(s) 26, 252, 540
EcoT38I GRGCYC 1 cut(s) 260
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 7 cut(s) 187, 277, 313, 582, 667, 983, 1040
FalI AAGNNNNNCTT 2 cut(s) 980, 1012
FaqI GGGAC 1 cut(s) 617
FatI CATG 7 cut(s) 183, 273, 309, 578, 663, 979, 1036
FauI CCCGC 3 cut(s) 208, 527, 1144
FbaI TGATCA 3 cut(s) 172, 301, 1003
FblI GTMKAC 1 cut(s) 701
FokI GGATG 2 cut(s) 938, 1154
FriOI GRGCYC 1 cut(s) 260
FspBI CTAG 4 cut(s) 642, 723, 1092, 1176
GlaI GCGC 2 cut(s) 123, 442
GsaI CCCAGC 3 cut(s) 394, 638, 1196
GsuI CTGGAG 2 cut(s) 81, 821
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 9 cut(s) 21, 31, 72, 258, 545, 686, 876, 920, 1169
HapII CCGG 3 cut(s) 53, 687, 872
HgaI GACGC 4 cut(s) 205, 211, 654, 687
HhaI GCGC 2 cut(s) 124, 443
Hin1I GRCGYC 4 cut(s) 81, 216, 222, 441
Hin1II CATG 7 cut(s) 187, 277, 313, 582, 667, 983, 1040
Hin6I GCGC 2 cut(s) 122, 441
HinP1I GCGC 2 cut(s) 122, 441
HpaII CCGG 3 cut(s) 53, 687, 872
HphI GGTGA 3 cut(s) 137, 229, 953
Hpy166II GTNNAC 1 cut(s) 702
Hpy188I TCNGA 3 cut(s) 172, 670, 1057
Hpy188III TCNNGA 4 cut(s) 77, 415, 527, 860
Hpy8I GTNNAC 1 cut(s) 702
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 5 cut(s) 33, 83, 170, 440, 1010
HpyCH4III ACNGT 5 cut(s) 335, 437, 824, 885, 977
HpyCH4IV ACGT 3 cut(s) 81, 615, 626
HpyCH4V TGCA 8 cut(s) 338, 558, 573, 585, 935, 1063, 1151, 1160
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 3 cut(s) 81, 615, 626
Hsp92I GRCGYC 4 cut(s) 81, 216, 222, 441
Hsp92II CATG 7 cut(s) 187, 277, 313, 582, 667, 983, 1040
HspAI GCGC 2 cut(s) 122, 441
KasI GGCGCC 1 cut(s) 440
KflI GGGWCCC 1 cut(s) 631
Ksp22I TGATCA 3 cut(s) 172, 301, 1003
KspI CCGCGG 1 cut(s) 1140
Kzo9I GATC 4 cut(s) 172, 301, 1003, 1030
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 3 cut(s) 100, 652, 1126
LweI GCATC 4 cut(s) 503, 509, 515, 1132
MaeI CTAG 4 cut(s) 642, 723, 1092, 1176
MaeII ACGT 3 cut(s) 81, 615, 626
MaeIII GTNAC 3 cut(s) 751, 913, 1211
MalI GATC 4 cut(s) 174, 303, 1005, 1032
MbiI CCGCTC 3 cut(s) 318, 515, 655
MboI GATC 4 cut(s) 172, 301, 1003, 1030
MboII GAAGA 4 cut(s) 76, 631, 684, 1119
MhlI GDGCHC 3 cut(s) 260, 626, 1123
MluCI AATT 3 cut(s) 178, 475, 1222
Mly113I GGCGCC 1 cut(s) 441
MseI TTAA 3 cut(s) 900, 987, 1225
MslI CAYNNNNRTG 3 cut(s) 614, 846, 1068
MspA1I CMGCKG 5 cut(s) 638, 893, 1139, 1157, 1166
MspI CCGG 3 cut(s) 53, 687, 872
MspR9I CCNGG 5 cut(s) 28, 254, 542, 688, 873
MvaI CCWGG 3 cut(s) 28, 254, 542
MvnI CGCG 2 cut(s) 122, 1139
NarI GGCGCC 1 cut(s) 441
NciI CCSGG 2 cut(s) 688, 873
NdeII GATC 4 cut(s) 172, 301, 1003, 1030
NlaIII CATG 7 cut(s) 187, 277, 313, 582, 667, 983, 1040
NlaIV GGNNCC 7 cut(s) 258, 442, 484, 539, 632, 633, 1087
NmeAIII GCCGAG 3 cut(s) 48, 192, 467
NspI RCATGY 2 cut(s) 313, 582
OliI CACNNNNGTG 1 cut(s) 614
PaqCI CACCTGC 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 451
PluTI GGCGCC 1 cut(s) 444
PmaCI CACGTG 2 cut(s) 616, 627
PmlI CACGTG 2 cut(s) 616, 627
Ppu21I YACGTR 2 cut(s) 616, 627
PpuMI RGGWCCY 1 cut(s) 631
PshAI GACNNNNGTC 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 631
Psp6I CCWGG 3 cut(s) 26, 252, 540
PspCI CACGTG 2 cut(s) 616, 627
PspEI GGTNACC 1 cut(s) 751
PspFI CCCAGC 3 cut(s) 390, 634, 1192
PspGI CCWGG 3 cut(s) 26, 252, 540
PspN4I GGNNCC 7 cut(s) 258, 442, 484, 539, 632, 633, 1087
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 6 cut(s) 20, 30, 256, 257, 631, 874
PspPPI RGGWCCY 1 cut(s) 631
PstI CTGCAG 2 cut(s) 560, 1162
PstNI CAGNNNCTG 1 cut(s) 1157
RsaI GTAC 3 cut(s) 826, 882, 1096
RsaNI GTAC 3 cut(s) 825, 881, 1095
RseI CAYNNNNRTG 3 cut(s) 614, 846, 1068
SacII CCGCGG 1 cut(s) 1140
SapI GCTCTTC 1 cut(s) 614
SaqAI TTAA 3 cut(s) 900, 987, 1225
Sau3AI GATC 4 cut(s) 172, 301, 1003, 1030
Sau96I GGNCC 6 cut(s) 20, 30, 256, 257, 631, 874
ScrFI CCNGG 5 cut(s) 28, 254, 542, 688, 873
SduI GDGCHC 3 cut(s) 260, 626, 1123
SfaNI GCATC 4 cut(s) 503, 509, 515, 1132
SfcI CTRYAG 2 cut(s) 556, 1158
SfoI GGCGCC 1 cut(s) 442
Sfr303I CCGCGG 1 cut(s) 1140
SgrBI CCGCGG 1 cut(s) 1140
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 3 cut(s) 614, 846, 1068
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SpeI ACTAGT 3 cut(s) 722, 1091, 1175
Sse9I AATT 3 cut(s) 178, 475, 1222
SspDI GGCGCC 1 cut(s) 440
SspI AATATT 1 cut(s) 1051
SspMI CTAG 4 cut(s) 642, 723, 1092, 1176
StyD4I CCNGG 5 cut(s) 26, 252, 540, 686, 871
TaaI ACNGT 5 cut(s) 335, 437, 824, 885, 977
TaiI ACGT 3 cut(s) 84, 618, 629
TaqI TCGA 3 cut(s) 76, 910, 1131
TasI AATT 3 cut(s) 178, 475, 1222
TauI GCSGC 7 cut(s) 494, 641, 658, 683, 686, 1157, 1169
Tru1I TTAA 3 cut(s) 900, 987, 1225
Tru9I TTAA 3 cut(s) 900, 987, 1225
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 200, 290
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 1 cut(s) 475
XceI RCATGY 2 cut(s) 313, 582
XcmI CCANNNNNNNNNTGG 2 cut(s) 250, 845
XmiI GTMKAC 1 cut(s) 701
XspI CTAG 4 cut(s) 642, 723, 1092, 1176
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.