Rh5DG357000

Protein LATERAL ROOT PRIMORDIUM

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
53064300 .. 53070169
5870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG357000.1

Sequence Viewer

Length: 1239 bp
ATGTGGTCGTCATCATCAGGCCCTTCCAGGCCCATCAACTACGGCTTCCCACCGGAGATGGGTATGCTCGGCCTTCGAGACGTCTTCCTTGTTGCTCCAGCTGCAGCCTACCACAATCATCCGCACCACCACCACCACCACCACCACCCCCCGCACCATCAACAAGACCTTCTCTCATCTGATCATAATTCCATGAATGGCTCTAATCCCGCCACAGCTCTCGGCGTCGGCGTCGGCGTCATTCCACTCCTCACCACCACCCCTTGCCTGGGCCCTTCCAATACCAACATGAATGATGACAATGATGATGATGATGATCACAACATGCTGAGCGGTCGCAACAGAAACAGTGCAGGTGGAGGAGGAGGAAGTATTCACTTGTGGCAGCAGCCGACCCAGCAACAACACCAACTTTTCCTCAAGAAAAACCAGAACCTTCACGGTGGCGCCCATTTGATGGTTCAAGGTGGTGGTGGTGGGAATTTTGGTGCCTCGGCGGCATCGGCATCGGCATCGGCATCGTCCGCTCTCACTTGTCAAGACTGCGGGAACCAGGCCAAGAAAGACTGCAATCATCGGCGGTGCAGGACATGCTGCAAGAGCCGTGGTTTTGATTGTACCACGCACGTGAAGAGCACGTGGGTCCCAGCGGCTAGACGCAGGGAGCGGCAGCTCATGTCCGAGGGAGTGGCGGCGGCCGGGTCTTCTGCGTCTACCTCGCACACTAATAATACTAGTTCCAATGCCAAAAAACCAAGACTGGTTACTTCGCAAAACACAACTCCCTCTCATACGAACTCCACTTCAAACACTACGCCACCCAGAAGCTATGACAGTACCTCCAAACTCCAACGCCAAGATGGTGGTTTTCCAGAGACAATGCCGGGCCAAGTACGGGCGCCAGCGGTTTTTAAGTGCGTTCGAGTAACGGCCGTGGATGATGGTGCAGAGGATGAGTATGCCTATCACGCTGTCGTCAAAATCAACGGTCATGTGTTTAAGGGGTTCTTGTATGATCAAGGGGTTGAAGGTCAAGGTAGAGATCATCATGGCTTCCCAAATATTTCTGATTTGCATTTGGGTGGTAGAAGCGGAGGTGCCACTAGTACCCCAACTGGAAGAAATGGAGGTGCTCCAATACTCGACCCCGCGGATGCTTATGCAGCCGCTGCAGCAGCGGCCTCCACTAGTGGAGGATTGCTGCTGGGAGTGTCAAACTTTGGTAACTCAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

43.32

Weight (kDa)

8.11

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 177 - 343 2.6e-60 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009808)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 4 cut(s) 446, 488, 898, 1097
AccB7I CCANNNNNTGG 1 cut(s) 457
AccBSI CCGCTC 3 cut(s) 333, 527, 667
AccI GTMKAC 1 cut(s) 713
AccII CGCG 1 cut(s) 1151
AcoI YGGCCR 2 cut(s) 696, 930
AcsI RAATTY 1 cut(s) 481
AcvI CACGTG 2 cut(s) 628, 639
AcyI GRCGYC 6 cut(s) 81, 225, 231, 237, 447, 899
AfaI GTAC 4 cut(s) 619, 838, 894, 1108
AfiI CCNNNNNNNGG 5 cut(s) 59, 268, 269, 457, 895
AgsI TTSAA 3 cut(s) 464, 807, 1028
AhlI ACTAGT 3 cut(s) 734, 1103, 1187
AjnI CCWGG 3 cut(s) 26, 267, 552
AleI CACNNNNGTG 1 cut(s) 626
AluBI AGCT 4 cut(s) 101, 218, 673, 828
AluI AGCT 4 cut(s) 101, 218, 673, 828
Alw21I GWGCWC 2 cut(s) 638, 1135
Alw26I GTCTC 2 cut(s) 72, 869
AlwNI CAGNNNCTG 1 cut(s) 1169
AoxI GGCC 9 cut(s) 19, 29, 70, 271, 555, 696, 886, 930, 1179
ApaI GGGCCC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 481
AspLEI GCGC 2 cut(s) 449, 901
AspS9I GGNCC 6 cut(s) 20, 30, 271, 272, 643, 886
AsuC2I CCSGG 2 cut(s) 700, 885
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 643
BaeGI GKGCMC 1 cut(s) 275
BanI GGYRCC 4 cut(s) 446, 488, 898, 1097
BanII GRGCYC 1 cut(s) 275
BbrPI CACGTG 2 cut(s) 628, 639
BbsI GAAGAC 2 cut(s) 76, 696
Bbv12I GWGCWC 2 cut(s) 638, 1135
BccI CCATC 6 cut(s) 41, 52, 165, 451, 854, 935
BceAI ACGGC 4 cut(s) 58, 588, 917, 945
BcgI CGANNNNNNTGC 6 cut(s) 489, 495, 501, 523, 529, 535
BciT130I CCWGG 3 cut(s) 28, 269, 554
BclI TGATCA 3 cut(s) 181, 316, 1015
BcnI CCSGG 2 cut(s) 700, 885
BcoDI GTCTC 2 cut(s) 72, 869
BcuI ACTAGT 3 cut(s) 734, 1103, 1187
BfaI CTAG 4 cut(s) 654, 735, 1104, 1188
BfmI CTRYAG 2 cut(s) 102, 1170
BfoI RGCGCY 2 cut(s) 450, 902
BfuAI ACCTGC 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 497
BlpI GCTNAGC 1 cut(s) 329
Bme1390I CCNGG 5 cut(s) 28, 269, 554, 700, 885
Bme18I GGWCC 1 cut(s) 643
BmgT120I GGNCC 6 cut(s) 20, 30, 271, 272, 643, 886
BmiI GGNNCC 8 cut(s) 273, 448, 490, 551, 644, 645, 900, 1099
BmrFI CCNGG 5 cut(s) 28, 269, 554, 700, 885
BmsI GCATC 5 cut(s) 509, 515, 521, 527, 1144
BpiI GAAGAC 2 cut(s) 76, 696
BpmI CTGGAG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 700, 885
BsaAI YACGTR 2 cut(s) 628, 639
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 6 cut(s) 81, 225, 231, 237, 447, 899
BsaJI CCNNGG 6 cut(s) 268, 492, 604, 681, 933, 1149
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 824, 854
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 268, 269, 457, 895
Bse1I ACTGG 2 cut(s) 765, 1120
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 3 cut(s) 28, 269, 554
BseDI CCNNGG 6 cut(s) 268, 492, 604, 681, 933, 1149
BseGI GGATG 4 cut(s) 118, 943, 958, 1159
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 5 cut(s) 59, 268, 269, 457, 895
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 765, 1120
BseRI GAGGAG 3 cut(s) 239, 375, 378
BseSI GKGCMC 1 cut(s) 275
BseX3I CGGCCG 2 cut(s) 696, 930
BseYI CCCAGC 3 cut(s) 396, 646, 1204
BsgI GTGCAG 3 cut(s) 372, 604, 966
Bsh1236I CGCG 1 cut(s) 1151
Bsh1285I CGRYCG 3 cut(s) 337, 699, 933
BshFI GGCC 9 cut(s) 21, 31, 72, 273, 557, 698, 888, 932, 1181
BshNI GGYRCC 4 cut(s) 446, 488, 898, 1097
BsiEI CGRYCG 3 cut(s) 337, 699, 933
BsiHKAI GWGCWC 2 cut(s) 638, 1135
BsiSI CCGG 3 cut(s) 53, 699, 884
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 5 cut(s) 59, 268, 269, 457, 895
BsmAI GTCTC 2 cut(s) 72, 869
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 9 cut(s) 21, 31, 72, 273, 557, 698, 888, 932, 1181
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 275, 638, 1135
Bsp143I GATC 4 cut(s) 181, 316, 1015, 1042
Bsp1720I GCTNAGC 1 cut(s) 329
BspANI GGCC 9 cut(s) 21, 31, 72, 273, 557, 698, 888, 932, 1181
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 1 cut(s) 1151
BspLI GGNNCC 8 cut(s) 273, 448, 490, 551, 644, 645, 900, 1099
BspMAI CTGCAG 2 cut(s) 106, 1174
BspMI ACCTGC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 626
BspT107I GGYRCC 4 cut(s) 446, 488, 898, 1097
BsrBI CCGCTC 3 cut(s) 333, 527, 667
BsrI ACTGG 2 cut(s) 765, 1120
BssECI CCNNGG 6 cut(s) 268, 492, 604, 681, 933, 1149
BssMI GATC 4 cut(s) 181, 316, 1015, 1042
BssNI GRCGYC 6 cut(s) 81, 225, 231, 237, 447, 899
Bst2UI CCWGG 3 cut(s) 28, 269, 554
Bst4CI ACNGT 4 cut(s) 350, 443, 836, 989
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 6 cut(s) 81, 225, 231, 237, 447, 899
BstAPI GCANNNNNTGC 2 cut(s) 591, 1169
BstBAI YACGTR 2 cut(s) 628, 639
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 3 cut(s) 604, 933, 1149
BstF5I GGATG 4 cut(s) 118, 943, 958, 1159
BstFNI CGCG 1 cut(s) 1151
BstH2I RGCGCY 2 cut(s) 450, 902
BstHHI GCGC 2 cut(s) 449, 901
BstKTI GATC 4 cut(s) 184, 319, 1018, 1045
BstMAI GTCTC 2 cut(s) 72, 869
BstMBI GATC 4 cut(s) 181, 316, 1015, 1042
BstMCI CGRYCG 3 cut(s) 337, 699, 933
BstNI CCWGG 3 cut(s) 28, 269, 554
BstNSI RCATGY 2 cut(s) 328, 594
BstSCI CCNGG 5 cut(s) 26, 267, 552, 698, 883
BstSFI CTRYAG 2 cut(s) 102, 1170
BstSLI GKGCMC 1 cut(s) 275
BstUI CGCG 1 cut(s) 1151
BstV2I GAAGAC 2 cut(s) 76, 696
BstXI CCANNNNNNTGG 1 cut(s) 863
BstZI CGGCCG 2 cut(s) 696, 930
BsuRI GGCC 9 cut(s) 21, 31, 72, 273, 557, 698, 888, 932, 1181
BtgI CCRYGG 3 cut(s) 604, 933, 1149
BtsCI GGATG 4 cut(s) 118, 943, 958, 1159
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 903
CaiI CAGNNNCTG 1 cut(s) 1169
CfoI GCGC 2 cut(s) 449, 901
Cfr13I GGNCC 6 cut(s) 20, 30, 271, 272, 643, 886
Cfr42I CCGCGG 1 cut(s) 1152
CseI GACGC 5 cut(s) 214, 220, 226, 666, 699
Csp6I GTAC 4 cut(s) 618, 837, 893, 1107
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 7 cut(s) 193, 289, 325, 591, 676, 992, 1049
CviQI GTAC 4 cut(s) 618, 837, 893, 1107
DdeI CTNAG 1 cut(s) 329
DinI GGCGCC 2 cut(s) 448, 900
DpnI GATC 4 cut(s) 183, 318, 1017, 1044
DpnII GATC 4 cut(s) 181, 316, 1015, 1042
EaeI YGGCCR 2 cut(s) 696, 930
EagI CGGCCG 2 cut(s) 696, 930
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
EclXI CGGCCG 2 cut(s) 696, 930
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 643
Eco52I CGGCCG 2 cut(s) 696, 930
Eco72I CACGTG 2 cut(s) 628, 639
EcoO109I RGGNCCY 3 cut(s) 20, 272, 643
EcoRII CCWGG 3 cut(s) 26, 267, 552
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 2 cut(s) 448, 900
EheI GGCGCC 2 cut(s) 448, 900
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 7 cut(s) 196, 292, 328, 594, 679, 995, 1052
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 1 cut(s) 629
FatI CATG 7 cut(s) 192, 288, 324, 590, 675, 991, 1048
FauI CCCGC 4 cut(s) 159, 217, 539, 1156
FbaI TGATCA 3 cut(s) 181, 316, 1015
FblI GTMKAC 1 cut(s) 713
FokI GGATG 4 cut(s) 105, 950, 965, 1166
FriOI GRGCYC 1 cut(s) 275
FspBI CTAG 4 cut(s) 654, 735, 1104, 1188
GlaI GCGC 2 cut(s) 448, 900
GsaI CCCAGC 3 cut(s) 400, 650, 1208
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 2 cut(s) 450, 902
HaeIII GGCC 9 cut(s) 21, 31, 72, 273, 557, 698, 888, 932, 1181
HapII CCGG 3 cut(s) 53, 699, 884
HgaI GACGC 5 cut(s) 214, 220, 226, 666, 699
HhaI GCGC 2 cut(s) 449, 901
Hin1I GRCGYC 6 cut(s) 81, 225, 231, 237, 447, 899
Hin1II CATG 7 cut(s) 196, 292, 328, 594, 679, 995, 1052
Hin6I GCGC 2 cut(s) 447, 899
HinP1I GCGC 2 cut(s) 447, 899
HpaII CCGG 3 cut(s) 53, 699, 884
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 3 cut(s) 181, 682, 1069
Hpy188III TCNNGA 4 cut(s) 77, 421, 539, 872
Hpy8I GTNNAC 1 cut(s) 714
Hpy99I CGWCG 2 cut(s) 230, 236
HpyAV CCTTC 6 cut(s) 33, 83, 179, 285, 446, 1022
HpyCH4III ACNGT 4 cut(s) 350, 443, 836, 989
HpyCH4IV ACGT 3 cut(s) 81, 627, 638
HpyCH4V TGCA 9 cut(s) 104, 353, 570, 585, 597, 947, 1075, 1163, 1172
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 3 cut(s) 81, 627, 638
Hsp92I GRCGYC 6 cut(s) 81, 225, 231, 237, 447, 899
Hsp92II CATG 7 cut(s) 196, 292, 328, 594, 679, 995, 1052
HspAI GCGC 2 cut(s) 447, 899
KasI GGCGCC 2 cut(s) 446, 898
KflI GGGWCCC 1 cut(s) 643
Ksp22I TGATCA 3 cut(s) 181, 316, 1015
KspI CCGCGG 1 cut(s) 1152
Kzo9I GATC 4 cut(s) 181, 316, 1015, 1042
LguI GCTCTTC 1 cut(s) 626
LmnI GCTCC 3 cut(s) 100, 664, 1138
LweI GCATC 5 cut(s) 509, 515, 521, 527, 1144
MaeI CTAG 4 cut(s) 654, 735, 1104, 1188
MaeII ACGT 3 cut(s) 81, 627, 638
MaeIII GTNAC 3 cut(s) 763, 925, 1223
MalI GATC 4 cut(s) 183, 318, 1017, 1044
MbiI CCGCTC 3 cut(s) 333, 527, 667
MboI GATC 4 cut(s) 181, 316, 1015, 1042
MboII GAAGA 4 cut(s) 76, 643, 696, 1131
MhlI GDGCHC 3 cut(s) 275, 638, 1135
MluCI AATT 3 cut(s) 187, 481, 1234
Mly113I GGCGCC 2 cut(s) 447, 899
MmeI TCCRAC 1 cut(s) 874
MseI TTAA 3 cut(s) 912, 999, 1237
MslI CAYNNNNRTG 2 cut(s) 626, 1080
MspA1I CMGCKG 6 cut(s) 101, 650, 905, 1151, 1169, 1178
MspI CCGG 3 cut(s) 53, 699, 884
MspR9I CCNGG 5 cut(s) 28, 269, 554, 700, 885
MvaI CCWGG 3 cut(s) 28, 269, 554
MvnI CGCG 1 cut(s) 1151
NarI GGCGCC 2 cut(s) 447, 899
NciI CCSGG 2 cut(s) 700, 885
NdeII GATC 4 cut(s) 181, 316, 1015, 1042
NlaIII CATG 7 cut(s) 196, 292, 328, 594, 679, 995, 1052
NlaIV GGNNCC 8 cut(s) 273, 448, 490, 551, 644, 645, 900, 1099
NmeAIII GCCGAG 3 cut(s) 48, 201, 473
NspI RCATGY 2 cut(s) 328, 594
OliI CACNNNNGTG 1 cut(s) 626
PaqCI CACCTGC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 234
PflMI CCANNNNNTGG 1 cut(s) 457
PluTI GGCGCC 2 cut(s) 450, 902
PmaCI CACGTG 2 cut(s) 628, 639
PmlI CACGTG 2 cut(s) 628, 639
Ppu21I YACGTR 2 cut(s) 628, 639
PpuMI RGGWCCY 1 cut(s) 643
Psp5II RGGWCCY 1 cut(s) 643
Psp6I CCWGG 3 cut(s) 26, 267, 552
PspCI CACGTG 2 cut(s) 628, 639
PspFI CCCAGC 3 cut(s) 396, 646, 1204
PspGI CCWGG 3 cut(s) 26, 267, 552
PspN4I GGNNCC 8 cut(s) 273, 448, 490, 551, 644, 645, 900, 1099
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 6 cut(s) 20, 30, 271, 272, 643, 886
PspPPI RGGWCCY 1 cut(s) 643
PstI CTGCAG 2 cut(s) 106, 1174
PstNI CAGNNNCTG 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 4 cut(s) 619, 838, 894, 1108
RsaNI GTAC 4 cut(s) 618, 837, 893, 1107
RseI CAYNNNNRTG 2 cut(s) 626, 1080
SacII CCGCGG 1 cut(s) 1152
SapI GCTCTTC 1 cut(s) 626
SaqAI TTAA 3 cut(s) 912, 999, 1237
Sau3AI GATC 4 cut(s) 181, 316, 1015, 1042
Sau96I GGNCC 6 cut(s) 20, 30, 271, 272, 643, 886
ScrFI CCNGG 5 cut(s) 28, 269, 554, 700, 885
SduI GDGCHC 3 cut(s) 275, 638, 1135
SfaNI GCATC 5 cut(s) 509, 515, 521, 527, 1144
SfcI CTRYAG 2 cut(s) 102, 1170
SfoI GGCGCC 2 cut(s) 448, 900
Sfr303I CCGCGG 1 cut(s) 1152
SgrBI CCGCGG 1 cut(s) 1152
SinI GGWCC 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 626, 1080
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SpeI ACTAGT 3 cut(s) 734, 1103, 1187
Sse9I AATT 3 cut(s) 187, 481, 1234
SspDI GGCGCC 2 cut(s) 446, 898
SspI AATATT 1 cut(s) 1063
SspMI CTAG 4 cut(s) 654, 735, 1104, 1188
StyD4I CCNGG 5 cut(s) 26, 267, 552, 698, 883
TaaI ACNGT 4 cut(s) 350, 443, 836, 989
TaiI ACGT 3 cut(s) 84, 630, 641
TaqI TCGA 3 cut(s) 76, 922, 1143
TasI AATT 3 cut(s) 187, 481, 1234
TauI GCSGC 7 cut(s) 500, 653, 670, 695, 698, 1169, 1181
Tru1I TTAA 3 cut(s) 912, 999, 1237
Tru9I TTAA 3 cut(s) 912, 999, 1237
TscAI CASTG 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 209, 305
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 643
XapI RAATTY 1 cut(s) 481
XceI RCATGY 2 cut(s) 328, 594
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 857
XmiI GTMKAC 1 cut(s) 713
XspI CTAG 4 cut(s) 654, 735, 1104, 1188
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.