MD11G1186100.v1.1

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009808
Physical Location & Seq
Forward (+)
25245179 .. 25247597
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1186100.v1.1.491

Sequence Viewer

Length: 1236 bp
ATGTCCATGTGGTCCTCCCCCCCTTCCAGCAGACCCCTCACCTACGGCCACGTCCCTCCGGAAATGGCGGGCATGGTCGGCCTTCGCGATGTCTTCGTCGTTGCCCCAGCCGCCGCCTACCACCACAACACACATCTCCACCACCACTACGGCCACGACCCCAATCTCCTCTCATCCTCCGACCATCACCACTCCATCAATGCCTCCAACAACCCTGCAACCGCTCTCGGCGTCGGAGTCATTCCTCTTCTCACGGCCGCCCCTTGCCTCGCCCCACCCAATATGTCAAATGTCGATGATGATGACGAAGATACTCACACTCCTGCGGGTATGAGTATGGGCATGGGAATGAGTATGGGTATGGGTATGATGAGTGGCGGCCATCAGCGCAACAACAGAAGCTCCTCGGCAGCAGCAGCAGGAGGAGGGGGAGGGATTCAATTGTGGCAGCAGAACCCGCCACATTTTTTCAAGAAAACTCATCATGAAGCCGCCGTTACTACTGATCTAGGCGTGGCCCACTTAAACCAAGGTGGGGGTGGGGGAGGGAATAACGTTATAAACGCGGGGTCTGCTGCCGCCTCGTCGGGGTCGTCCACGATGACGTGTCAAGACTGCGGGAACCAGGCCAAGAAGGATTGCACGCACCGGCGGTGCAGGACGTGCTGCAAGAGCCGGGGTTTCGACTGTGCGACTCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCAGGGAGCGGCAGCTGATGTCTGCAGCGGCTGGCGGTGGGGCTGGGTCTAATTCTGGGTCTACTTCTAGTGCCAAGAAGCCTAGACTCATTGGCGCCTCTCAAACCACAACTTCTCACACTTCCACTTCCAACACTACACCCCCCAGAAGCTACGACACCAGCTCTAGTCACCAAGATGCTGGTTTCAAAGATCCATTGCCGGGACAAGTACGTGCGCCGGCGGTTTTCAAGTGTGTAAGAGTGACCGCGGTGGAGGACGGCGAGGATGAATACGCATACCAGGCTGTTGTCAAAATTAACGGTCATGTGTTCAAAGGCTTCTTGTATGATCAAGGAGTTGATGGGAGAGACGGGTTTCCTAACATCTCTGAATTGCATTTGGGGGGTGGTGGCAATGGCAGAAGAAATGGGGCTTCTTCTCCGATCCTTGACCCGTCGGATGTTTATGCTGCGTCTGGTGCAGGATTGCTGGGAGGTTCAAACTTTGGTAATCCAATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

412

Amino Acids

42.57

Weight (kDa)

7.73

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 200 - 358 8.8e-62 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12330 AT5G12330 AT5G12330 AT5G12330
fragaria_vesca FvH4_3g27920
malus_domestica MD03G1166900.v1.1 MD11G1186100.v1.1
prunus_persica Prupe.4G267200_v2.0.a1
pyrus_communis pycom03g12230 pycom12g08680
rosa_chinensis RchiOBHm_Chr5g0050641
rosa_laevigata RLG00000034715
rosa_multiflora Rmu_ssc0000350.1_g000034
rosa_roxburghii Rroxscaffold_1G00030150
rosa_rugosa Rorug05G0262400 Rorug05G0262500
rosa_samantha Rh5AG334700 Rh5BG344000 Rh5CG371800 Rh5DG357000
rosa_wichuraiana Rw5G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccB1I GGYRCC 2 cut(s) 715, 824
AccBSI CCGCTC 2 cut(s) 224, 739
AccI GTMKAC 1 cut(s) 791
AccII CGCG 3 cut(s) 87, 566, 980
AccIII TCCGGA 1 cut(s) 58
AclI AACGTT 1 cut(s) 555
AclWI GGATC 2 cut(s) 917, 1150
AcoI YGGCCR 4 cut(s) 46, 151, 255, 379
AcvI CACGTG 2 cut(s) 700, 711
AcyI GRCGYC 2 cut(s) 231, 825
AfaI GTAC 1 cut(s) 942
AfiI CCNNNNNNNGG 3 cut(s) 535, 588, 932
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 6 cut(s) 440, 472, 919, 961, 1045, 1212
AjiI CACGTC 3 cut(s) 52, 606, 663
AjnI CCWGG 2 cut(s) 624, 1011
AleI CACNNNNGTG 1 cut(s) 713
AluBI AGCT 4 cut(s) 402, 745, 882, 894
AluI AGCT 4 cut(s) 402, 745, 882, 894
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 2 cut(s) 917, 1150
AlwNI CAGNNNCTG 1 cut(s) 761
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 7 cut(s) 46, 79, 151, 255, 379, 516, 627
ApeKI GCWGC 9 cut(s) 410, 413, 416, 448, 575, 666, 742, 755, 1181
AspLEI GCGC 4 cut(s) 390, 732, 827, 949
AspS9I GGNCC 2 cut(s) 12, 517
AsuC2I CCSGG 2 cut(s) 677, 933
AsuHPI GGTGA 3 cut(s) 31, 179, 893
AvaII GGWCC 1 cut(s) 12
BanI GGYRCC 2 cut(s) 715, 824
BbrPI CACGTG 2 cut(s) 700, 711
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 710
BbvI GCAGC 9 cut(s) 422, 425, 428, 460, 562, 653, 754, 767, 1168
BccI CCATC 4 cut(s) 192, 203, 390, 1067
BceAI ACGGC 5 cut(s) 61, 166, 270, 479, 1006
BciT130I CCWGG 2 cut(s) 626, 1013
BclI TGATCA 1 cut(s) 1060
BcnI CCSGG 2 cut(s) 677, 933
BcoDI GTCTC 1 cut(s) 1074
BfaI CTAG 4 cut(s) 509, 798, 813, 897
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 828
Bme1390I CCNGG 4 cut(s) 626, 677, 933, 1013
Bme18I GGWCC 1 cut(s) 12
BmgBI CACGTC 3 cut(s) 52, 606, 663
BmgT120I GGNCC 2 cut(s) 12, 517
BmiI GGNNCC 3 cut(s) 623, 717, 826
BmrFI CCNGG 4 cut(s) 626, 677, 933, 1013
BmsI GCATC 1 cut(s) 898
BpiI GAAGAC 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 677, 933
BsaAI YACGTR 3 cut(s) 700, 711, 944
BsaHI GRCGYC 2 cut(s) 231, 825
BsaJI CCNNGG 4 cut(s) 405, 529, 676, 978
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 4 cut(s) 304, 334, 386, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 588, 932
Bse118I RCCGGY 3 cut(s) 648, 718, 949
Bse3DI GCAATG 2 cut(s) 926, 1132
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 2 cut(s) 626, 1013
BseDI CCNNGG 4 cut(s) 405, 529, 676, 978
BseGI GGATG 3 cut(s) 173, 1003, 1177
BseLI CCNNNNNNNGG 3 cut(s) 535, 588, 932
BseMI GCAATG 2 cut(s) 926, 1132
BseRI GAGGAG 3 cut(s) 158, 394, 438
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 9 cut(s) 422, 425, 428, 460, 562, 653, 754, 767, 1168
BseYI CCCAGC 3 cut(s) 106, 773, 1201
BsgI GTGCAG 2 cut(s) 676, 1212
Bsh1236I CGCG 3 cut(s) 87, 566, 980
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 7 cut(s) 48, 81, 153, 257, 381, 518, 629
BshNI GGYRCC 2 cut(s) 715, 824
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 710
BsiSI CCGG 6 cut(s) 59, 649, 676, 719, 932, 950
BslFI GGGAC 2 cut(s) 38, 948
BslI CCNNNNNNNGG 3 cut(s) 535, 588, 932
BsmAI GTCTC 1 cut(s) 1074
BsmBI CGTCTC 1 cut(s) 1074
BsmFI GGGAC 2 cut(s) 38, 948
BsnI GGCC 7 cut(s) 48, 81, 153, 257, 381, 518, 629
Bsp1286I GDGCHC 1 cut(s) 710
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 4 cut(s) 505, 922, 1060, 1155
Bsp68I TCGCGA 1 cut(s) 87
BspANI GGCC 7 cut(s) 48, 81, 153, 257, 381, 518, 629
BspEI TCCGGA 1 cut(s) 58
BspFNI CGCG 3 cut(s) 87, 566, 980
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 3 cut(s) 623, 717, 826
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 2 cut(s) 917, 1150
BspQI GCTCTTC 1 cut(s) 698
BspT107I GGYRCC 2 cut(s) 715, 824
BsrBI CCGCTC 2 cut(s) 224, 739
BsrDI GCAATG 2 cut(s) 926, 1132
BsrFI RCCGGY 3 cut(s) 648, 718, 949
BssAI RCCGGY 3 cut(s) 648, 718, 949
BssECI CCNNGG 4 cut(s) 405, 529, 676, 978
BssMI GATC 4 cut(s) 505, 922, 1060, 1155
BssNI GRCGYC 2 cut(s) 231, 825
BssT1I CCWWGG 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 626, 1013
Bst4CI ACNGT 2 cut(s) 689, 1034
Bst6I CTCTTC 2 cut(s) 252, 698
BstACI GRCGYC 2 cut(s) 231, 825
BstAPI GCANNNNNTGC 1 cut(s) 663
BstBAI YACGTR 3 cut(s) 700, 711, 944
BstC8I GCNNGC 5 cut(s) 70, 644, 720, 763, 951
BstDSI CCRYGG 1 cut(s) 978
BstF5I GGATG 3 cut(s) 173, 1003, 1177
BstFNI CGCG 3 cut(s) 87, 566, 980
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 4 cut(s) 390, 732, 827, 949
BstKTI GATC 4 cut(s) 508, 925, 1063, 1158
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 4 cut(s) 505, 922, 1060, 1155
BstMCI CGRYCG 1 cut(s) 258
BstNI CCWGG 2 cut(s) 626, 1013
BstSCI CCNGG 4 cut(s) 624, 675, 931, 1011
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 3 cut(s) 87, 566, 980
BstV1I GCAGC 9 cut(s) 422, 425, 428, 460, 562, 653, 754, 767, 1168
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 922
BstXI CCANNNNNNTGG 1 cut(s) 911
BstYI RGATCY 1 cut(s) 922
BstZI CGGCCG 1 cut(s) 255
BsuRI GGCC 7 cut(s) 48, 81, 153, 257, 381, 518, 629
BtgI CCRYGG 1 cut(s) 978
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 3 cut(s) 52, 606, 663
BtsCI GGATG 3 cut(s) 173, 1003, 1177
BtuMI TCGCGA 1 cut(s) 87
Cac8I GCNNGC 5 cut(s) 70, 644, 720, 763, 951
CaiI CAGNNNCTG 1 cut(s) 761
CciI TCATGA 1 cut(s) 484
CfoI GCGC 4 cut(s) 390, 732, 827, 949
Cfr10I RCCGGY 3 cut(s) 648, 718, 949
Cfr13I GGNCC 2 cut(s) 12, 517
Cfr42I CCGCGG 1 cut(s) 981
CseI GACGC 2 cut(s) 220, 1173
Csp6I GTAC 1 cut(s) 941
CviAII CATG 5 cut(s) 7, 73, 343, 485, 1037
CviQI GTAC 1 cut(s) 941
DinI GGCGCC 1 cut(s) 826
DpnI GATC 4 cut(s) 507, 924, 1062, 1157
DpnII GATC 4 cut(s) 505, 922, 1060, 1155
EaeI YGGCCR 4 cut(s) 46, 151, 255, 379
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 252, 698
EarI CTCTTC 2 cut(s) 252, 698
EclXI CGGCCG 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 255
Eco72I CACGTG 2 cut(s) 700, 711
EcoRII CCWGG 2 cut(s) 624, 1011
EcoT14I CCWWGG 1 cut(s) 529
EgeI GGCGCC 1 cut(s) 826
EheI GGCGCC 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 529
Esp3I CGTCTC 1 cut(s) 1074
FaeI CATG 5 cut(s) 10, 76, 346, 488, 1040
FaqI GGGAC 2 cut(s) 38, 948
FatI CATG 5 cut(s) 6, 72, 342, 484, 1036
FauI CCCGC 5 cut(s) 61, 319, 465, 559, 611
FbaI TGATCA 1 cut(s) 1060
FblI GTMKAC 1 cut(s) 791
FokI GGATG 3 cut(s) 160, 1010, 1184
FspBI CTAG 4 cut(s) 509, 798, 813, 897
GlaI GCGC 4 cut(s) 389, 731, 826, 948
GsaI CCCAGC 3 cut(s) 110, 777, 1205
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 7 cut(s) 48, 81, 153, 257, 381, 518, 629
HapII CCGG 6 cut(s) 59, 649, 676, 719, 932, 950
HgaI GACGC 2 cut(s) 220, 1173
HhaI GCGC 4 cut(s) 390, 732, 827, 949
Hin1I GRCGYC 2 cut(s) 231, 825
Hin1II CATG 5 cut(s) 10, 76, 346, 488, 1040
Hin6I GCGC 4 cut(s) 388, 730, 825, 947
HinP1I GCGC 4 cut(s) 388, 730, 825, 947
HinfI GANTC 4 cut(s) 237, 436, 694, 816
HpaII CCGG 6 cut(s) 59, 649, 676, 719, 932, 950
HphI GGTGA 3 cut(s) 31, 179, 893
Hpy166II GTNNAC 2 cut(s) 597, 792
Hpy188I TCNGA 5 cut(s) 181, 236, 1102, 1155, 1171
Hpy188III TCNNGA 5 cut(s) 59, 86, 472, 485, 611
Hpy8I GTNNAC 2 cut(s) 597, 792
Hpy99I CGWCG 4 cut(s) 101, 236, 589, 1171
HpyAV CCTTC 3 cut(s) 33, 92, 628
HpyCH4III ACNGT 2 cut(s) 689, 1034
HpyCH4IV ACGT 7 cut(s) 51, 555, 605, 662, 699, 710, 943
HpyCH4V TGCA 7 cut(s) 218, 642, 657, 669, 755, 1108, 1193
HpySE526I ACGT 7 cut(s) 51, 555, 605, 662, 699, 710, 943
Hsp92I GRCGYC 2 cut(s) 231, 825
Hsp92II CATG 5 cut(s) 10, 76, 346, 488, 1040
HspAI GCGC 4 cut(s) 388, 730, 825, 947
KasI GGCGCC 1 cut(s) 824
Kpn2I TCCGGA 1 cut(s) 58
KroI GCCGGC 2 cut(s) 718, 949
KroNI GCCGGC 2 cut(s) 720, 951
Ksp22I TGATCA 1 cut(s) 1060
KspI CCGCGG 1 cut(s) 981
Kzo9I GATC 4 cut(s) 505, 922, 1060, 1155
LguI GCTCTTC 1 cut(s) 698
LmnI GCTCC 2 cut(s) 407, 736
Lsp1109I GCAGC 9 cut(s) 422, 425, 428, 460, 562, 653, 754, 767, 1168
LweI GCATC 1 cut(s) 898
MaeI CTAG 4 cut(s) 509, 798, 813, 897
MaeII ACGT 7 cut(s) 51, 555, 605, 662, 699, 710, 943
MaeIII GTNAC 3 cut(s) 496, 899, 973
MalI GATC 4 cut(s) 507, 924, 1062, 1157
MbiI CCGCTC 2 cut(s) 224, 739
MboI GATC 4 cut(s) 505, 922, 1060, 1155
MboII GAAGA 6 cut(s) 85, 239, 320, 715, 1140, 1146
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 5 cut(s) 440, 781, 1026, 1103, 1231
Mly113I GGCGCC 1 cut(s) 825
MlyI GAGTC 3 cut(s) 246, 688, 810
MmeI TCCRAC 5 cut(s) 204, 214, 231, 885, 1149
MreI CGCCGGCG 1 cut(s) 949
MroI TCCGGA 1 cut(s) 58
MroNI GCCGGC 2 cut(s) 718, 949
MseI TTAA 2 cut(s) 524, 1029
MslI CAYNNNNRTG 3 cut(s) 347, 713, 906
MspA1I CMGCKG 3 cut(s) 745, 758, 980
MspI CCGG 6 cut(s) 59, 649, 676, 719, 932, 950
MspR9I CCNGG 4 cut(s) 626, 677, 933, 1013
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 2 cut(s) 626, 1013
MvnI CGCG 3 cut(s) 87, 566, 980
NaeI GCCGGC 2 cut(s) 720, 951
NarI GGCGCC 1 cut(s) 825
NciI CCSGG 2 cut(s) 677, 933
NdeII GATC 4 cut(s) 505, 922, 1060, 1155
NgoMIV GCCGGC 2 cut(s) 718, 949
NlaIII CATG 5 cut(s) 10, 76, 346, 488, 1040
NlaIV GGNNCC 3 cut(s) 623, 717, 826
NmeAIII GCCGAG 3 cut(s) 207, 386, 706
NmuCI GTSAC 2 cut(s) 899, 973
NruI TCGCGA 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 713
PagI TCATGA 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 590
PdiI GCCGGC 2 cut(s) 720, 951
PfeI GAWTC 1 cut(s) 436
PleI GAGTC 3 cut(s) 245, 688, 810
PluTI GGCGCC 1 cut(s) 828
PmaCI CACGTG 2 cut(s) 700, 711
PmlI CACGTG 2 cut(s) 700, 711
PpsI GAGTC 3 cut(s) 245, 688, 810
Ppu21I YACGTR 3 cut(s) 700, 711, 944
PsiI TTATAA 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 624, 1011
PspCI CACGTG 2 cut(s) 700, 711
PspFI CCCAGC 3 cut(s) 106, 773, 1201
PspGI CCWGG 2 cut(s) 624, 1011
PspN4I GGNNCC 3 cut(s) 623, 717, 826
PspPI GGNCC 2 cut(s) 12, 517
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 922
PvuII CAGCTG 1 cut(s) 745
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 1 cut(s) 942
RsaNI GTAC 1 cut(s) 941
RseI CAYNNNNRTG 3 cut(s) 347, 713, 906
SacII CCGCGG 1 cut(s) 981
SapI GCTCTTC 1 cut(s) 698
SaqAI TTAA 2 cut(s) 524, 1029
Sau3AI GATC 4 cut(s) 505, 922, 1060, 1155
Sau96I GGNCC 2 cut(s) 12, 517
SchI GAGTC 3 cut(s) 246, 688, 810
ScrFI CCNGG 4 cut(s) 626, 677, 933, 1013
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 898
SfcI CTRYAG 1 cut(s) 753
SfoI GGCGCC 1 cut(s) 826
Sfr303I CCGCGG 1 cut(s) 981
SgrAI CRCCGGYG 2 cut(s) 648, 949
SgrBI CCGCGG 1 cut(s) 981
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 3 cut(s) 347, 713, 906
Sse9I AATT 5 cut(s) 440, 781, 1026, 1103, 1231
SspDI GGCGCC 1 cut(s) 824
SspMI CTAG 4 cut(s) 509, 798, 813, 897
StyD4I CCNGG 4 cut(s) 624, 675, 931, 1011
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 2 cut(s) 689, 1034
TaiI ACGT 7 cut(s) 54, 558, 608, 665, 702, 713, 946
TaqI TCGA 2 cut(s) 294, 684
TasI AATT 5 cut(s) 440, 781, 1026, 1103, 1231
TauI GCSGC 9 cut(s) 113, 116, 260, 381, 494, 581, 725, 742, 761
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 524, 1029
Tru9I TTAA 2 cut(s) 524, 1029
TseFI GTSAC 2 cut(s) 899, 973
TseI GCWGC 9 cut(s) 410, 413, 416, 448, 575, 666, 742, 755, 1181
Tsp45I GTSAC 2 cut(s) 899, 973
TspDTI ATGAA 2 cut(s) 501, 1014
VpaK11BI GGWCC 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 791
XspI CTAG 4 cut(s) 509, 798, 813, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.