Rorug05G0262400

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009808
Physical Location & Seq
Forward (+)
29696029 .. 29706722
10694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0262400.1

Sequence Viewer

Length: 2451 bp
ATGAAAGCCAAGAAGCTAAGCTCTCTCTTTCGCTCTGCCATCAAATACAAACCATCCTCCTCCTCCTCCTCCTCCGCCAAATCGCTACCCTCACCCGCCGGGGACGCCACTCTCAAATTCGTCTCTGCTTCCGATTCGACTAGGCAGCTCCCTGGGGACATTTATTCGATACTGTGCGGTGGTACTTATCCTGATATCCAGGAAATCCATGATGCAGAATCTTTGGAGAGGGAATTGGACTTACCATGGTTTCCAGATTTATCCCATAGTGCGATGCCATTGCGCCGCAAAGAAGTTAGTCGTGAAAGGAAGCAGAGGTTTGCTTTCGGCAACACTCAGGGTATCCGTTTTGATAAGTTAGTCGACATGTGTGCCAACAGGCTAGGGACTGAAACCACTATTCAAGTGTTTGACAAATTGGGAAGAGAAACGGGTGTGAAAGAATGTAATGCATTGATAAAGAGATGCATAGAGGGGGCTAGGATTGCTCCTGATGAAGTAGTTGGAGAAAAGCATATGCAGTTGGCTTTCGAAATTTTTAAGTCAATGAAGGAACAGGGTTTCCCGCTTGAAGAGGAAACATATGGTCCGTTTCTTGAATATCTTATTGACATGGGTATGACAAAAGAGTTTTGCTTTTTCTGCCGAGTTATCAAAGATGACAACCCTTTGTCAGTTTCAAGATTAGGATACTATGAGATGATGTTGTGGATCAGAGTCAATGATGAAAAAAAGATTCAAGAGCTCTGTAATGACATTGAGAGTTATGATGGAGTAAACAAGTCAATTTTACAAGAGAATTATTTGTTAGCACTTTGTGAAAGTGACCGGACGAAGGAGATTTTGAAGCTGTTAGAAAGTATGGACATCACAAAGTTCTCATCACCGGATTTTGTGGCACGTATCTTTAAATGCCTGGGAAGGCTCCTATTGGAGTCTTTTGCAGAGAAGGTCCTTCTGGAATTTAAAGCCAGTGACTGTGCAGCAGGGAATACTTCAAACTTGATCTATAGTTATGTTGTTGGCATTCCGAATTTAGCGGTTGAGGATGTCATTTCAAAATTTAAAAACTTGCACACAAAACTTGAGGTGACACCTTCATCTGTGTCATATGAGAAGCTTATCATCTACTGTTGCGATTCACTTAAGGTGCATGTGGCTCTTGAGCTGGTGGATGAGATGTCTGAACAGGGTTTGACATTTTCGATGGAGGCATTACACTCCATTTTACAAGCTAGTAGTGAGAGTTGTGACTTTAATCTGGTTCACCAAATTTATTCAGTGATTAGCCGAGGCAATTTGAAGCCCAATAGCGAAACTTTCAGGAGTATGATAAATCTTTGTGTGAAAATGAAGGATTATGAGGGTGCCTATAGCATGCTGAGTGATTTGGAGAAAATGAATTTGACGCCCACAGCTGCCATGTACAATGCTATAATGGTTGGATATTTCCGAGAGAAGAACTTGTCCGGTGGGTTAAAGGTTCTCAAACAAATGAAAGAAGCAGATGTAAAACCAGATTCCCACACTTTCAGCCATCTAATAACCAACTGCAACTCTGAAGAGGACATAAACATGTATTATGAAGAAATGAAGCGATCTGGAATTCAAGTTACCAAGCAAGTTTTCATGGCACTTGTAAATGCATATGCAGCTTGTGGACAGTTTGAAAAGGCAAAACAGGTACTCTTAGACAAGGGAATTCCAGTAAAGAGCTTCAATGAGATTAAAAGTGTGCTTGTCCAAGCCCTTGCATCACATGGGCAATTGTCTGATGCATTTAATACATATGAAGAGATCAAGCAAGCTGGATGCAGTTTGGAGCCGAAAGCTGTTATAAGTCTTATCGAGCACCTTCAATCTGATGAAGAAGCATTAAGCAGATTACTCCTCCTACTTGAGACACTAAATGATCCAAACTATTGGCTTGATGGTTGCTTGAGAACTATCTTATATTGTGTTCGTTACAAGCATTTAAGACCTGCCGTCAATTTGCTTGAGCAACTCAGGGATCAGGTCTGTACTGACGAATTAGCTCTAGAAGTAATTTTTGATAAGGTGTTTTCCTTCATAGCAGAATCAGAGTCTACATCTTTAGAGTTTGGCCTAGATTTGCTTCATGCTATGAAGAGTGAGCTTGGCCTCACCCCTTCACGAAAATGTCTCGATTTTCTTCTCCATGCTTGTGTCACTGCCAAAGATCTGCAAAGTTCCCTATTTGTATGGCAAGAATATCAAGCCGCTGGCTTGCCTTACAATACCTTAAGCTTTTTAAGGATGTATCAAGCCCTTTTGGCTGCAGGGGACCGAAAGGCTGCAAAAGTTTTGGGACGTAAAATTCCTAAAGATGATCCTCATGTTCGGTCTATCATTGAATCATGTACACTGACTTATTTAGAGAAGAAGGAAGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

816

Amino Acids

92.39

Weight (kDa)

6.28

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 371 - 534 5.6e-13 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 445 - 560 7.9e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 460 - 518 5.4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 471 - 518 1e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12330 AT5G12330 AT5G12330 AT5G12330
fragaria_vesca FvH4_3g27920
malus_domestica MD03G1166900.v1.1 MD11G1186100.v1.1
prunus_persica Prupe.4G267200_v2.0.a1
pyrus_communis pycom03g12230 pycom12g08680
rosa_chinensis RchiOBHm_Chr5g0050641
rosa_laevigata RLG00000034715
rosa_multiflora Rmu_ssc0000350.1_g000034
rosa_roxburghii Rroxscaffold_1G00030150
rosa_rugosa Rorug05G0262400 Rorug05G0262500
rosa_samantha Rh5AG334700 Rh5BG344000 Rh5CG371800 Rh5DG357000
rosa_wichuraiana Rw5G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1838
Acc36I ACCTGC 1 cut(s) 1990
AccB1I GGYRCC 1 cut(s) 1367
AccI GTMKAC 2 cut(s) 363, 2087
AciI CCGC 7 cut(s) 75, 96, 177, 286, 566, 1040, 2241
AclWI GGATC 4 cut(s) 719, 1907, 2019, 2345
AcuI CTGAAG 1 cut(s) 1581
AcyI GRCGYC 2 cut(s) 105, 1409
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 5 cut(s) 184, 1427, 1686, 2023, 2383
AfiI CCNNNNNNNGG 1 cut(s) 835
AflII CTTAAG 2 cut(s) 1145, 2263
AflIII ACRYGT 2 cut(s) 366, 1575
AhdI GACNNNNNGTC 1 cut(s) 1985
AjnI CCWGG 3 cut(s) 151, 198, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 1610, 1642
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
Alw21I GWGCWC 2 cut(s) 747, 1854
Alw26I GTCTC 3 cut(s) 127, 1895, 2168
AlwI GGATC 4 cut(s) 719, 1907, 2019, 2345
AlwNI CAGNNNCTG 1 cut(s) 978
AoxI GGCC 2 cut(s) 2104, 2140
ApeKI GCWGC 6 cut(s) 145, 983, 1418, 1652, 2297, 2315
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 3 cut(s) 587, 952, 2305
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 5 cut(s) 84, 876, 1102, 1259, 2137
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 3 cut(s) 587, 952, 2305
BanI GGYRCC 1 cut(s) 1367
BanII GRGCYC 1 cut(s) 747
Bbv12I GWGCWC 2 cut(s) 747, 1854
BbvI GCAGC 6 cut(s) 157, 995, 1405, 1664, 2284, 2302
BccI CCATC 6 cut(s) 47, 61, 764, 1201, 1545, 1925
BceAI ACGGC 1 cut(s) 1970
BcgI CGANNNNNNTGC 4 cut(s) 262, 296, 353, 387
BciT130I CCWGG 3 cut(s) 153, 200, 917
BciVI GTATCC 2 cut(s) 353, 683
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 3 cut(s) 127, 1895, 2168
BfaI CTAG 6 cut(s) 141, 383, 480, 1236, 2039, 2108
BfmI CTRYAG 3 cut(s) 1009, 1372, 2298
BfrI CTTAAG 2 cut(s) 1145, 2263
BfuAI ACCTGC 1 cut(s) 1990
BfuI GTATCC 2 cut(s) 353, 683
BglI GCCNNNNNGGC 1 cut(s) 2294
BglII AGATCT 1 cut(s) 2200
BisI GCNGC 8 cut(s) 146, 286, 984, 1419, 1653, 2241, 2298, 2316
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 8 cut(s) 147, 287, 985, 1420, 1654, 2242, 2299, 2317
Bme1390I CCNGG 4 cut(s) 100, 153, 200, 917
Bme18I GGWCC 3 cut(s) 587, 952, 2305
BmeRI GACNNNNNGTC 1 cut(s) 1985
BmgT120I GGNCC 3 cut(s) 587, 952, 2305
BmiI GGNNCC 4 cut(s) 926, 1369, 1824, 2306
BmrFI CCNGG 4 cut(s) 100, 153, 200, 917
BmsI GCATC 6 cut(s) 202, 264, 455, 1763, 1765, 1802
Bpu1102I GCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 5 cut(s) 1106, 1184, 1919, 1960, 2018
BpuMI CCSGG 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 902
BsaHI GRCGYC 2 cut(s) 105, 1409
BsaJI CCNNGG 6 cut(s) 99, 151, 152, 245, 916, 1291
BsaWI WCCGGW 3 cut(s) 828, 886, 1469
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 2 cut(s) 972, 1706
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 3 cut(s) 153, 200, 917
BseDI CCNNGG 6 cut(s) 99, 151, 152, 245, 916, 1291
BseGI GGATG 5 cut(s) 53, 1054, 1180, 1817, 2283
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 350, 1373, 2020
BseNI ACTGG 2 cut(s) 972, 1706
BseRI GAGGAG 6 cut(s) 49, 52, 55, 58, 61, 1880
BseXI GCAGC 6 cut(s) 157, 995, 1405, 1664, 2284, 2302
BsgI GTGCAG 1 cut(s) 1002
BshFI GGCC 2 cut(s) 2106, 2142
BshNI GGYRCC 1 cut(s) 1367
BsiHKAI GWGCWC 2 cut(s) 747, 1854
BsiSI CCGG 4 cut(s) 99, 829, 887, 1470
BslFI GGGAC 5 cut(s) 116, 170, 400, 2318, 2343
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 3 cut(s) 127, 1895, 2168
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 5 cut(s) 116, 170, 400, 2318, 2343
BsmI GAATGC 1 cut(s) 1026
BsnI GGCC 2 cut(s) 2106, 2142
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 747, 1854
Bsp1407I TGTACA 2 cut(s) 1425, 2381
Bsp143I GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
Bsp1720I GCTNAGC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 7 cut(s) 75, 96, 177, 286, 566, 1040, 2241
BspANI GGCC 2 cut(s) 2106, 2142
BspCNI CTCAG 3 cut(s) 349, 1374, 2019
BspLI GGNNCC 4 cut(s) 926, 1369, 1824, 2306
BspMAI CTGCAG 1 cut(s) 2302
BspMI ACCTGC 1 cut(s) 1990
BspPI GGATC 4 cut(s) 719, 1907, 2019, 2345
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 1367
BspTI CTTAAG 2 cut(s) 1145, 2263
BsrDI GCAATG 1 cut(s) 278
BsrGI TGTACA 2 cut(s) 1425, 2381
BsrI ACTGG 2 cut(s) 972, 1706
BssECI CCNNGG 6 cut(s) 99, 151, 152, 245, 916, 1291
BssMI GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
BssNI GRCGYC 2 cut(s) 105, 1409
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 3 cut(s) 153, 200, 917
Bst4CI ACNGT 4 cut(s) 174, 980, 1133, 1665
Bst6I CTCTTC 5 cut(s) 418, 567, 1557, 1788, 2123
BstACI GRCGYC 2 cut(s) 105, 1409
BstAFI CTTAAG 2 cut(s) 1145, 2263
BstAUI TGTACA 2 cut(s) 1425, 2381
BstBAI YACGTR 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 1379, 1806, 2245, 2249
BstDEI CTNAG 5 cut(s) 17, 336, 1382, 1690, 2006
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 5 cut(s) 53, 1054, 1180, 1817, 2283
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 8 cut(s) 714, 1008, 1601, 1800, 1915, 2014, 2203, 2353
BstMAI GTCTC 3 cut(s) 127, 1895, 2168
BstMBI GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
BstMWI GCNNNNNNNGC 5 cut(s) 104, 485, 642, 1652, 2294
BstNI CCWGG 3 cut(s) 153, 200, 917
BstNSI RCATGY 4 cut(s) 370, 1157, 1381, 1579
BstSCI CCNGG 4 cut(s) 98, 151, 198, 915
BstSFI CTRYAG 3 cut(s) 1009, 1372, 2298
BstV1I GCAGC 6 cut(s) 157, 995, 1405, 1664, 2284, 2302
BstX2I RGATCY 1 cut(s) 2200
BstXI CCANNNNNNTGG 1 cut(s) 1923
BstYI RGATCY 1 cut(s) 2200
BsuI GTATCC 2 cut(s) 353, 683
BsuRI GGCC 2 cut(s) 2106, 2142
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 287
BtsCI GGATG 5 cut(s) 53, 1054, 1180, 1817, 2283
BtsI GCAGTG 1 cut(s) 2190
BtsIMutI CAGTG 4 cut(s) 979, 1287, 2190, 2384
BveI ACCTGC 1 cut(s) 1990
Cac8I GCNNGC 4 cut(s) 1379, 1806, 2245, 2249
CaiI CAGNNNCTG 1 cut(s) 978
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 587, 952, 2305
CseI GACGC 2 cut(s) 113, 1417
Csp6I GTAC 5 cut(s) 183, 1426, 1685, 2022, 2382
CviQI GTAC 5 cut(s) 183, 1426, 1685, 2022, 2382
DdeI CTNAG 5 cut(s) 17, 336, 1382, 1690, 2006
DpnI GATC 8 cut(s) 713, 1007, 1600, 1799, 1914, 2013, 2202, 2352
DpnII GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
DraI TTTAAA 3 cut(s) 910, 967, 1066
DraIII CACNNNGTG 1 cut(s) 818
DriI GACNNNNNGTC 1 cut(s) 1985
Eam1104I CTCTTC 5 cut(s) 418, 567, 1557, 1788, 2123
Eam1105I GACNNNNNGTC 1 cut(s) 1985
EarI CTCTTC 5 cut(s) 418, 567, 1557, 1788, 2123
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 747
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 587, 952, 2305
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 1581
EcoICRI GAGCTC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 952
EcoRI GAATTC 2 cut(s) 1605, 1701
EcoRII CCWGG 3 cut(s) 151, 198, 915
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 245
EcoT22I ATGCAT 4 cut(s) 454, 470, 1648, 1780
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 127
FaqI GGGAC 5 cut(s) 116, 170, 400, 2318, 2343
FauI CCCGC 2 cut(s) 103, 573
FauNDI CATATG 5 cut(s) 516, 583, 1111, 1648, 1789
FblI GTMKAC 2 cut(s) 363, 2087
Fnu4HI GCNGC 8 cut(s) 146, 286, 984, 1419, 1653, 2241, 2298, 2316
FokI GGATG 5 cut(s) 40, 1061, 1187, 1824, 2290
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 8 cut(s) 146, 286, 984, 1419, 1653, 2241, 2298, 2316
FspBI CTAG 6 cut(s) 141, 383, 480, 1236, 2039, 2108
GlaI GCGC 1 cut(s) 284
GluI GCNGC 8 cut(s) 146, 286, 984, 1419, 1653, 2241, 2298, 2316
HaeIII GGCC 2 cut(s) 2106, 2142
HapII CCGG 4 cut(s) 99, 829, 887, 1470
HgaI GACGC 2 cut(s) 113, 1417
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 2 cut(s) 105, 1409
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 2 cut(s) 1118, 2266
HpaII CCGG 4 cut(s) 99, 829, 887, 1470
HphI GGTGA 5 cut(s) 84, 876, 1102, 1259, 2137
Hpy166II GTNNAC 6 cut(s) 364, 778, 1267, 1661, 2088, 2384
Hpy188I TCNGA 9 cut(s) 133, 716, 1032, 1186, 1454, 1561, 1774, 1864, 2083
Hpy8I GTNNAC 6 cut(s) 364, 778, 1267, 1661, 2088, 2384
HpyCH4III ACNGT 4 cut(s) 174, 980, 1133, 1665
HpyCH4IV ACGT 2 cut(s) 901, 2332
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 485, 642, 1652, 2294
HpyF3I CTNAG 5 cut(s) 17, 336, 1382, 1690, 2006
HpySE526I ACGT 2 cut(s) 901, 2332
Hsp92I GRCGYC 2 cut(s) 105, 1409
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
LmnI GCTCC 4 cut(s) 153, 493, 930, 1822
Lsp1109I GCAGC 6 cut(s) 157, 995, 1405, 1664, 2284, 2302
LweI GCATC 6 cut(s) 202, 264, 455, 1763, 1765, 1802
MaeI CTAG 6 cut(s) 141, 383, 480, 1236, 2039, 2108
MaeII ACGT 2 cut(s) 901, 2332
MaeIII GTNAC 7 cut(s) 824, 974, 1090, 1250, 1612, 1964, 2188
MalI GATC 8 cut(s) 713, 1007, 1600, 1799, 1914, 2013, 2202, 2352
MboI GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
MfeI CAATTG 1 cut(s) 1766
MflI RGATCY 1 cut(s) 2200
MhlI GDGCHC 2 cut(s) 747, 1854
MlyI GAGTC 3 cut(s) 726, 944, 2093
MmeI TCCRAC 2 cut(s) 484, 1423
Mph1103I ATGCAT 4 cut(s) 454, 470, 1648, 1780
MslI CAYNNNNRTG 4 cut(s) 617, 1574, 2158, 2184
MspA1I CMGCKG 2 cut(s) 1418, 2243
MspCI CTTAAG 2 cut(s) 1145, 2263
MspI CCGG 4 cut(s) 99, 829, 887, 1470
MspR9I CCNGG 4 cut(s) 100, 153, 200, 917
MunI CAATTG 1 cut(s) 1766
Mva1269I GAATGC 1 cut(s) 1026
MvaI CCWGG 3 cut(s) 153, 200, 917
MwoI GCNNNNNNNGC 5 cut(s) 104, 485, 642, 1652, 2294
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 5 cut(s) 516, 583, 1111, 1648, 1789
NdeII GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
NlaIV GGNNCC 4 cut(s) 926, 1369, 1824, 2306
NmeAIII GCCGAG 2 cut(s) 671, 1316
NmuCI GTSAC 5 cut(s) 824, 974, 1090, 1250, 2188
NsiI ATGCAT 4 cut(s) 454, 470, 1648, 1780
NspI RCATGY 4 cut(s) 370, 1157, 1381, 1579
NspV TTCGAA 1 cut(s) 531
PaeI GCATGC 1 cut(s) 1381
PasI CCCWGGG 1 cut(s) 152
PciI ACATGT 2 cut(s) 366, 1575
PctI GAATGC 1 cut(s) 1026
PfeI GAWTC 7 cut(s) 134, 218, 736, 1139, 1520, 2078, 2375
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 8 cut(s) 147, 287, 985, 1420, 1654, 2242, 2299, 2317
PleI GAGTC 3 cut(s) 725, 943, 2092
PpsI GAGTC 3 cut(s) 725, 943, 2092
Ppu21I YACGTR 1 cut(s) 902
PpuMI RGGWCCY 1 cut(s) 952
PscI ACATGT 2 cut(s) 366, 1575
PsiI TTATAA 1 cut(s) 1838
Psp124BI GAGCTC 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 3 cut(s) 151, 198, 915
PspGI CCWGG 3 cut(s) 151, 198, 915
PspN4I GGNNCC 4 cut(s) 926, 1369, 1824, 2306
PspPI GGNCC 3 cut(s) 587, 952, 2305
PspPPI RGGWCCY 1 cut(s) 952
PstI CTGCAG 1 cut(s) 2302
PstNI CAGNNNCTG 1 cut(s) 978
PsuI RGATCY 1 cut(s) 2200
PvuII CAGCTG 1 cut(s) 1418
RsaI GTAC 5 cut(s) 184, 1427, 1686, 2023, 2383
RsaNI GTAC 5 cut(s) 183, 1426, 1685, 2022, 2382
RseI CAYNNNNRTG 4 cut(s) 617, 1574, 2158, 2184
SacI GAGCTC 1 cut(s) 747
SalI GTCGAC 1 cut(s) 362
SatI GCNGC 8 cut(s) 146, 286, 984, 1419, 1653, 2241, 2298, 2316
Sau3AI GATC 8 cut(s) 711, 1005, 1598, 1797, 1912, 2011, 2200, 2350
Sau96I GGNCC 3 cut(s) 587, 952, 2305
SchI GAGTC 3 cut(s) 726, 944, 2093
ScrFI CCNGG 4 cut(s) 100, 153, 200, 917
SduI GDGCHC 2 cut(s) 747, 1854
SfaNI GCATC 6 cut(s) 202, 264, 455, 1763, 1765, 1802
SfcI CTRYAG 3 cut(s) 1009, 1372, 2298
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 3 cut(s) 587, 952, 2305
SmiMI CAYNNNNRTG 4 cut(s) 617, 1574, 2158, 2184
SmlI CTYRAG 7 cut(s) 1085, 1145, 1163, 1898, 1939, 1997, 2263
SmoI CTYRAG 7 cut(s) 1085, 1145, 1163, 1898, 1939, 1997, 2263
SphI GCATGC 1 cut(s) 1381
SsiI CCGC 7 cut(s) 75, 96, 177, 286, 566, 1040, 2241
SspMI CTAG 6 cut(s) 141, 383, 480, 1236, 2039, 2108
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 4 cut(s) 98, 151, 198, 915
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 4 cut(s) 174, 980, 1133, 1665
TaiI ACGT 2 cut(s) 904, 2335
TaqI TCGA 7 cut(s) 137, 167, 363, 531, 1205, 1848, 2166
TaqII GACCGA 2 cut(s) 2322, 2352
TatI WGTACW 3 cut(s) 1425, 2021, 2381
TauI GCSGC 2 cut(s) 288, 2243
TfiI GAWTC 7 cut(s) 134, 218, 736, 1139, 1520, 2078, 2375
TscAI CASTG 4 cut(s) 979, 1287, 2197, 2391
TseFI GTSAC 5 cut(s) 824, 974, 1090, 1250, 2188
TseI GCWGC 6 cut(s) 145, 983, 1418, 1652, 2297, 2315
Tsp45I GTSAC 5 cut(s) 824, 974, 1090, 1250, 2188
TspGWI ACGGA 2 cut(s) 335, 579
TspRI CASTG 4 cut(s) 979, 1287, 2197, 2391
Vha464I CTTAAG 2 cut(s) 1145, 2263
VpaK11BI GGWCC 3 cut(s) 587, 952, 2305
XbaI TCTAGA 1 cut(s) 2038
XceI RCATGY 4 cut(s) 370, 1157, 1381, 1579
XmiI GTMKAC 2 cut(s) 363, 2087
XspI CTAG 6 cut(s) 141, 383, 480, 1236, 2039, 2108
Zsp2I ATGCAT 4 cut(s) 454, 470, 1648, 1780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.