Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009808

Physical Location & Seq

Genomic Coordinates Reverse (-)

29707265 .. 29708122

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0262500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTTCATTATTCCCACAATTCCTCTCCCATCCTAACCCTCACCCACAAAACCATCTCCTCTCCTCCCAAACCACCAAAAACCCATCACAGCATTACATTCGTATACCACCCAGAAAACACTACTTGTTCATCACCAAATGCACTGCACCAAACTCTACTCAACCCGATTTCCCAAGTCCAAACTCTGAAACCACCACCAGCGCAGAGAAATTCCCAATCGAAAAGCGAAGAAAATCGGAAATCACCCGAGACAGGAAGTCCTCAACTGGCCTGGAAAAGCCCGAGCCACCCAACTTTGAGATTGGTTGGAAGAGAACCAAAGAGATTCCACTGGAGAAGCCAGTAGGGTATGTCATAGCTGACTTCCTGGAGAAGTTGGAAGGCTTAATGGGGCGAGAATTCGGGTCCAGAGAGTTGCTGGTGAAGGCTGCAGAGATTGTGGCTGAGAGAGCAAGAGAGGAAGCAGAAGTGTTAAGAGATGAAGGTAAGGTGGAAGATAGAATGGTGACCGAATTGTTCAGGGTGCTGAAGCTGATGGAGATGGACATGGTTATGGTAAAGGCTGCAGTGAAGGACGAGACTTTGAGTGAGAGGCTTGAGCAGGCTAAAGCAAGGTGCAGGCAAGCTATACTTGTTGCTTTATCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

217

Amino Acids

24.87

Weight (kDa)

8.8

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12330 AT5G12330 AT5G12330 AT5G12330
fragaria_vesca	FvH4_3g27920
malus_domestica	MD03G1166900.v1.1 MD11G1186100.v1.1
prunus_persica	Prupe.4G267200_v2.0.a1
pyrus_communis	pycom03g12230 pycom12g08680
rosa_chinensis	RchiOBHm_Chr5g0050641
rosa_laevigata	RLG00000034715
rosa_multiflora	Rmu_ssc0000350.1_g000034
rosa_roxburghii	Rroxscaffold_1G00030150
rosa_rugosa	Rorug05G0262400 Rorug05G0262500
rosa_samantha	Rh5AG334700 Rh5BG344000 Rh5CG371800 Rh5DG357000
rosa_wichuraiana	Rw5G031570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	212, 401
AcuI	CTGAAG	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	255
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	273, 369
AluBI	AGCT	3 cut(s)	362, 535, 629
AluI	AGCT	3 cut(s)	362, 535, 629
Alw26I	GTCTC	2 cut(s)	246, 575
Ama87I	CYCGRG	2 cut(s)	249, 284
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	431, 566
ApoI	RAATTY	2 cut(s)	212, 401
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	5 cut(s)	35, 127, 238, 436, 520
AvaI	CYCGRG	2 cut(s)	249, 284
AvaII	GGWCC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	418, 553
BccI	CCATC	5 cut(s)	39, 63, 94, 532, 538
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	2 cut(s)	275, 371
BcoDI	GTCTC	2 cut(s)	246, 575
BfmI	CTRYAG	2 cut(s)	432, 567
BisI	GCNGC	2 cut(s)	432, 567
BlsI	GCNGC	2 cut(s)	433, 568
Bme1390I	CCNGG	2 cut(s)	275, 371
Bme18I	GGWCC	1 cut(s)	408
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	2 cut(s)	249, 284
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	275, 371
BpmI	CTGGAG	2 cut(s)	356, 392
BpuEI	CTTGAG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	274, 339, 344
BseBI	CCWGG	2 cut(s)	275, 371
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	3 cut(s)	274, 339, 344
BseRI	GAGGAG	2 cut(s)	50, 55
BseXI	GCAGC	2 cut(s)	418, 553
BsgI	GTGCAG	2 cut(s)	132, 640
BshFI	GGCC	1 cut(s)	273
BsiHKCI	CYCGRG	2 cut(s)	249, 284
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	246, 575
BsnI	GGCC	1 cut(s)	273
BsoBI	CYCGRG	2 cut(s)	249, 284
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	2 cut(s)	436, 571
BsrI	ACTGG	3 cut(s)	274, 339, 344
BssNAI	GTATAC	1 cut(s)	107
Bst1107I	GTATAC	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	275, 371
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	606, 623, 627
BstDEI	CTNAG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	246, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	2 cut(s)	275, 371
BstPI	GGTNACC	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	273, 369
BstSFI	CTRYAG	2 cut(s)	432, 567
BstV1I	GCAGC	2 cut(s)	418, 553
BstZ17I	GTATAC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	2 cut(s)	144, 576
BtsIMutI	CAGTG	3 cut(s)	144, 332, 576
Cac8I	GCNNGC	3 cut(s)	606, 623, 627
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	408
CviAII	CATG	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	447
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	308
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	2 cut(s)	249, 284
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	273, 369
FaeI	CATG	1 cut(s)	553
FaiI	YATR	6 cut(s)	107, 354, 359, 551, 557, 632
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FatI	CATG	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	432, 567
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	432, 567
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	2 cut(s)	432, 567
GsuI	CTGGAG	2 cut(s)	356, 392
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	5 cut(s)	35, 127, 238, 436, 520
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	190, 241
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	377, 421, 479, 568
HpyCH4V	TGCA	5 cut(s)	144, 149, 434, 569, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	1 cut(s)	204
Lsp1109I	GCAGC	2 cut(s)	418, 553
MaeIII	GTNAC	1 cut(s)	508
MboII	GAAGA	3 cut(s)	243, 325, 509
MluCI	AATT	4 cut(s)	20, 212, 401, 515
MmeI	TCCRAC	2 cut(s)	290, 360
MnlI	CCTC	7 cut(s)	35, 51, 71, 76, 274, 454, 588
MseI	TTAA	2 cut(s)	389, 476
MslI	CAYNNNNRTG	1 cut(s)	554
MspR9I	CCNGG	2 cut(s)	275, 371
MvaI	CCWGG	2 cut(s)	275, 371
MwoI	GCNNNNNNNGC	1 cut(s)	452
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	433, 568
Psp6I	CCWGG	2 cut(s)	273, 369
PspEI	GGTNACC	1 cut(s)	508
PspGI	CCWGG	2 cut(s)	273, 369
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	408
PstI	CTGCAG	2 cut(s)	436, 571
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	389, 476
SatI	GCNGC	2 cut(s)	432, 567
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	2 cut(s)	275, 371
SetI	ASST	6 cut(s)	364, 490, 495, 537, 620, 631
SfcI	CTRYAG	2 cut(s)	432, 567
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	4 cut(s)	20, 212, 401, 515
StyD4I	CCNGG	2 cut(s)	273, 369
TaqI	TCGA	1 cut(s)	222
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	20, 212, 401, 515
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	389, 476
Tru9I	TTAA	2 cut(s)	389, 476
TscAI	CASTG	3 cut(s)	151, 339, 576
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	431, 566
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	121, 498
TspRI	CASTG	3 cut(s)	151, 339, 576
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	2 cut(s)	212, 401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.