FvH4_3g27920

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009808
Physical Location & Seq
Reverse (-)
20938733 .. 20941102
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27920.t1

Sequence Viewer

Length: 1065 bp
ATGTCCAGGCCCATCAACTACGGCTTTCCACCGGAGATGGGCATGCTCGGCCTTCGCGACGTCTTCCTTGTCGCTCCTGCAGCCGCATCCTACCACCACCACCACCAAGACCTTCTCTCATCTCATCATAACTCCTTGAATGCCTCTAACCCCGCCACGGCTCTCGGCGTCGGAGTCATGAATGATGACAGTGATGATCACAACATGATGAGCGGTCGCAATAGAAACTGTGGTGGTGGTGGTGTTCAGTTGTGGCAGCAGCCGACCCAGCAGCAACAACACCAACTCTTCCTCAAGAAAAACCAAAACCTTCATTTGATGGTTCAAGCAGGGGGCGGTGCCTCGGCTGCCTCGGCACTGACGTGTCAAGACTGCGGGAACCAGGCCAAGAAAGACTGCAGTCACCGGCGGTGCAGGACATGCTGCAAGAGCCGTGGTTTTGATTGTGCCACCCACGTCAAGAGCTCGTGGGTCCCAGCGGTTAGGCGCAGAGAGCGGCAGCTCATGGCGGCGGCGGCCGGCTCTTCTGCGTCTACTTCTCACACTACTAGTTCAAATGCCAAAAAGCCAAGACTGGTTACTTCGCGAAACACAACTCCCTCTCATACTAATTCCGCCACTTCAAACACGACGCCACCCAGAAGCTATGACACTAGTCACACTACCTCCAAACACCAACACCACGATGGTGGTTTTCCGGATACAATGCCGGGCCAAGTACAGGCGCCTGCGGTTTTCAAGTGCGTTCGAGTAACCGCCGTGGATGATGGTGGAGAGGATGAGTATGCCTATCACGCTGTCGTCAAAATCAACGGTCATGTGTTCAAGGGGTTCTTGTATGATCAAGGTAGAGATCATCATGGCTTCCCTAATATTTCTCATTTGCATTTGGGTGGTGGAAGCGGAGGCGGAGGCGGAGGTGCCACTAGTAGTACTCCAACAGGAAGAAATGAAGGTGCTCCAATACTCGACCCCTCGGATGCTTATGCAGCCGCTGCAGCTGCCTCCACTAGTGGAGGATTGTTGCTGGGAGGTTCAACCTTTTTTGGTAATTCATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

355

Amino Acids

37.33

Weight (kDa)

8.86

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 120 - 285 7.3e-58 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12330 AT5G12330 AT5G12330 AT5G12330
fragaria_vesca FvH4_3g27920
malus_domestica MD03G1166900.v1.1 MD11G1186100.v1.1
prunus_persica Prupe.4G267200_v2.0.a1
pyrus_communis pycom03g12230 pycom12g08680
rosa_chinensis RchiOBHm_Chr5g0050641
rosa_laevigata RLG00000034715
rosa_multiflora Rmu_ssc0000350.1_g000034
rosa_roxburghii Rroxscaffold_1G00030150
rosa_rugosa Rorug05G0262400 Rorug05G0262500
rosa_samantha Rh5AG334700 Rh5BG344000 Rh5CG371800 Rh5DG357000
rosa_wichuraiana Rw5G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccB1I GGYRCC 3 cut(s) 338, 724, 920
AccBSI CCGCTC 2 cut(s) 213, 496
AccI GTMKAC 1 cut(s) 533
AccII CGCG 2 cut(s) 57, 586
AccIII TCCGGA 1 cut(s) 697
AcoI YGGCCR 1 cut(s) 516
AcyI GRCGYC 4 cut(s) 60, 168, 632, 725
AfaI GTAC 2 cut(s) 720, 934
AfiI CCNNNNNNNGG 3 cut(s) 38, 157, 721
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 7 cut(s) 139, 326, 555, 624, 739, 826, 1038
AhlI ACTAGT 4 cut(s) 548, 653, 926, 1010
AjiI CACGTC 2 cut(s) 363, 457
AjnI CCWGG 2 cut(s) 5, 381
AleI CACNNNNGTG 2 cut(s) 361, 687
AluBI AGCT 4 cut(s) 465, 502, 645, 1001
AluI AGCT 4 cut(s) 465, 502, 645, 1001
Alw21I GWGCWC 2 cut(s) 467, 961
AlwNI CAGNNNCTG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 5 cut(s) 8, 49, 384, 516, 712
AspLEI GCGC 2 cut(s) 489, 727
AspS9I GGNCC 3 cut(s) 9, 472, 712
AsuC2I CCSGG 1 cut(s) 711
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 472
BanI GGYRCC 3 cut(s) 338, 724, 920
BanII GRGCYC 1 cut(s) 467
BauI CACGAG 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 467, 961
BccI CCATC 5 cut(s) 20, 31, 313, 680, 761
BceAI ACGGC 4 cut(s) 37, 174, 417, 743
BciT130I CCWGG 2 cut(s) 7, 383
BciVI GTATCC 1 cut(s) 694
BclI TGATCA 2 cut(s) 196, 841
BcnI CCSGG 1 cut(s) 711
BcuI ACTAGT 4 cut(s) 548, 653, 926, 1010
BfaI CTAG 4 cut(s) 549, 654, 927, 1011
BfmI CTRYAG 3 cut(s) 78, 397, 996
BfoI RGCGCY 1 cut(s) 728
BfuI GTATCC 1 cut(s) 694
BmcAI AGTACT 1 cut(s) 934
Bme1390I CCNGG 3 cut(s) 7, 383, 711
Bme18I GGWCC 1 cut(s) 472
BmgBI CACGTC 2 cut(s) 363, 457
BmgT120I GGNCC 3 cut(s) 9, 472, 712
BmiI GGNNCC 6 cut(s) 340, 380, 473, 474, 726, 922
BmrFI CCNGG 3 cut(s) 7, 383, 711
BmsI GCATC 2 cut(s) 95, 970
BoxI GACNNNNGTC 2 cut(s) 399, 654
BpiI GAAGAC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 711
BsaHI GRCGYC 4 cut(s) 60, 168, 632, 725
BsaJI CCNNGG 6 cut(s) 156, 342, 351, 433, 759, 975
BsaWI WCCGGW 2 cut(s) 31, 697
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 157, 721
Bse118I RCCGGY 2 cut(s) 405, 518
Bse1I ACTGG 1 cut(s) 579
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 2 cut(s) 7, 383
BseDI CCNNGG 6 cut(s) 156, 342, 351, 433, 759, 975
BseGI GGATG 4 cut(s) 86, 769, 784, 985
BseLI CCNNNNNNNGG 3 cut(s) 38, 157, 721
BseNI ACTGG 1 cut(s) 579
BseX3I CGGCCG 1 cut(s) 516
BseYI CCCAGC 3 cut(s) 267, 475, 1027
BsgI GTGCAG 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 57, 586
Bsh1285I CGRYCG 2 cut(s) 217, 519
BshFI GGCC 5 cut(s) 10, 51, 386, 518, 714
BshNI GGYRCC 3 cut(s) 338, 724, 920
BsiEI CGRYCG 2 cut(s) 217, 519
BsiHKAI GWGCWC 2 cut(s) 467, 961
BsiSI CCGG 5 cut(s) 32, 406, 519, 698, 710
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 3 cut(s) 38, 157, 721
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 5 cut(s) 10, 51, 386, 518, 714
Bsp1286I GDGCHC 2 cut(s) 467, 961
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 3 cut(s) 196, 841, 853
Bsp68I TCGCGA 2 cut(s) 57, 586
BspANI GGCC 5 cut(s) 10, 51, 386, 518, 714
BspEI TCCGGA 1 cut(s) 697
BspFNI CGCG 2 cut(s) 57, 586
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 6 cut(s) 340, 380, 473, 474, 726, 922
BspMAI CTGCAG 3 cut(s) 82, 401, 1000
BspQI GCTCTTC 1 cut(s) 529
BspT107I GGYRCC 3 cut(s) 338, 724, 920
BsrBI CCGCTC 2 cut(s) 213, 496
BsrFI RCCGGY 2 cut(s) 405, 518
BsrI ACTGG 1 cut(s) 579
BssAI RCCGGY 2 cut(s) 405, 518
BssECI CCNNGG 6 cut(s) 156, 342, 351, 433, 759, 975
BssMI GATC 3 cut(s) 196, 841, 853
BssNI GRCGYC 4 cut(s) 60, 168, 632, 725
BssSI CACGAG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 466
Bst2UI CCWGG 2 cut(s) 7, 383
Bst4CI ACNGT 3 cut(s) 191, 230, 815
Bst6I CTCTTC 2 cut(s) 293, 529
BstACI GRCGYC 4 cut(s) 60, 168, 632, 725
BstAPI GCANNNNNTGC 2 cut(s) 420, 995
BstC8I GCNNGC 3 cut(s) 44, 520, 729
BstDSI CCRYGG 3 cut(s) 156, 433, 759
BstF5I GGATG 4 cut(s) 86, 769, 784, 985
BstFNI CGCG 2 cut(s) 57, 586
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 489, 727
BstKTI GATC 3 cut(s) 199, 844, 856
BstMBI GATC 3 cut(s) 196, 841, 853
BstMCI CGRYCG 2 cut(s) 217, 519
BstNI CCWGG 2 cut(s) 7, 383
BstNSI RCATGY 2 cut(s) 46, 423
BstPAI GACNNNNGTC 2 cut(s) 399, 654
BstSCI CCNGG 3 cut(s) 5, 381, 709
BstSFI CTRYAG 3 cut(s) 78, 397, 996
BstUI CGCG 2 cut(s) 57, 586
BstV2I GAAGAC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 689
BstZI CGGCCG 1 cut(s) 516
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 5 cut(s) 10, 51, 386, 518, 714
BtgI CCRYGG 3 cut(s) 156, 433, 759
BtrI CACGTC 2 cut(s) 363, 457
BtsCI GGATG 4 cut(s) 86, 769, 784, 985
BtsIMutI CAGTG 2 cut(s) 196, 356
BtuMI TCGCGA 2 cut(s) 57, 586
Cac8I GCNNGC 3 cut(s) 44, 520, 729
CaiI CAGNNNCTG 1 cut(s) 995
CciI TCATGA 1 cut(s) 177
CfoI GCGC 2 cut(s) 489, 727
Cfr10I RCCGGY 2 cut(s) 405, 518
Cfr13I GGNCC 3 cut(s) 9, 472, 712
CseI GACGC 3 cut(s) 157, 519, 640
Csp6I GTAC 2 cut(s) 719, 933
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 7 cut(s) 43, 178, 205, 420, 505, 818, 860
CviQI GTAC 2 cut(s) 719, 933
DinI GGCGCC 1 cut(s) 726
DpnI GATC 3 cut(s) 198, 843, 855
DpnII GATC 3 cut(s) 196, 841, 853
EaeI YGGCCR 1 cut(s) 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 2 cut(s) 293, 529
EarI CTCTTC 2 cut(s) 293, 529
EciI GGCGGA 3 cut(s) 604, 924, 930
Ecl136II GAGCTC 1 cut(s) 465
EclXI CGGCCG 1 cut(s) 516
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 472
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 5, 381
EcoT38I GRGCYC 1 cut(s) 467
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
FaeI CATG 7 cut(s) 46, 181, 208, 423, 508, 821, 863
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 1 cut(s) 458
FatI CATG 7 cut(s) 42, 177, 204, 419, 504, 817, 859
FauI CCCGC 2 cut(s) 160, 368
FbaI TGATCA 2 cut(s) 196, 841
FblI GTMKAC 1 cut(s) 533
FokI GGATG 4 cut(s) 73, 776, 791, 992
FriOI GRGCYC 1 cut(s) 467
FspBI CTAG 4 cut(s) 549, 654, 927, 1011
GlaI GCGC 2 cut(s) 488, 726
GsaI CCCAGC 3 cut(s) 271, 479, 1031
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 5 cut(s) 10, 51, 386, 518, 714
HapII CCGG 5 cut(s) 32, 406, 519, 698, 710
HgaI GACGC 3 cut(s) 157, 519, 640
HhaI GCGC 2 cut(s) 489, 727
Hin1I GRCGYC 4 cut(s) 60, 168, 632, 725
Hin1II CATG 7 cut(s) 46, 181, 208, 423, 508, 821, 863
Hin6I GCGC 2 cut(s) 487, 725
HinP1I GCGC 2 cut(s) 487, 725
HinfI GANTC 1 cut(s) 174
HpaII CCGG 5 cut(s) 32, 406, 519, 698, 710
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 2 cut(s) 173, 979
Hpy188III TCNNGA 7 cut(s) 56, 178, 295, 368, 460, 585, 698
Hpy8I GTNNAC 1 cut(s) 534
Hpy99I CGWCG 3 cut(s) 62, 173, 634
HpyAV CCTTC 4 cut(s) 62, 122, 320, 947
HpyCH4III ACNGT 3 cut(s) 191, 230, 815
HpyCH4IV ACGT 3 cut(s) 60, 362, 456
HpyCH4V TGCA 7 cut(s) 80, 399, 414, 426, 886, 989, 998
HpySE526I ACGT 3 cut(s) 60, 362, 456
Hsp92I GRCGYC 4 cut(s) 60, 168, 632, 725
Hsp92II CATG 7 cut(s) 46, 181, 208, 423, 508, 821, 863
HspAI GCGC 2 cut(s) 487, 725
KasI GGCGCC 1 cut(s) 724
KflI GGGWCCC 1 cut(s) 472
Kpn2I TCCGGA 1 cut(s) 697
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Ksp22I TGATCA 2 cut(s) 196, 841
Kzo9I GATC 3 cut(s) 196, 841, 853
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 79, 964
LweI GCATC 2 cut(s) 95, 970
MaeI CTAG 4 cut(s) 549, 654, 927, 1011
MaeII ACGT 3 cut(s) 60, 362, 456
MaeIII GTNAC 4 cut(s) 401, 577, 656, 751
MalI GATC 3 cut(s) 198, 843, 855
MbiI CCGCTC 2 cut(s) 213, 496
MboI GATC 3 cut(s) 196, 841, 853
MboII GAAGA 4 cut(s) 55, 280, 516, 957
MhlI GDGCHC 2 cut(s) 467, 961
MluCI AATT 3 cut(s) 610, 1051, 1060
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 2 cut(s) 151, 962
MroI TCCGGA 1 cut(s) 697
MroNI GCCGGC 1 cut(s) 518
MseI TTAA 2 cut(s) 1058, 1063
MslI CAYNNNNRTG 4 cut(s) 361, 684, 687, 891
MspA1I CMGCKG 3 cut(s) 479, 995, 1001
MspI CCGG 5 cut(s) 32, 406, 519, 698, 710
MspR9I CCNGG 3 cut(s) 7, 383, 711
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 2 cut(s) 7, 383
MvnI CGCG 2 cut(s) 57, 586
NaeI GCCGGC 1 cut(s) 520
NarI GGCGCC 1 cut(s) 725
NciI CCSGG 1 cut(s) 711
NdeII GATC 3 cut(s) 196, 841, 853
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 7 cut(s) 46, 181, 208, 423, 508, 821, 863
NlaIV GGNNCC 6 cut(s) 340, 380, 473, 474, 726, 922
NmeAIII GCCGAG 4 cut(s) 27, 144, 323, 332
NmuCI GTSAC 2 cut(s) 401, 656
NruI TCGCGA 2 cut(s) 57, 586
NspI RCATGY 2 cut(s) 46, 423
OliI CACNNNNGTG 2 cut(s) 361, 687
PaeI GCATGC 1 cut(s) 46
PagI TCATGA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 359
PctI GAATGC 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 472
PshAI GACNNNNGTC 2 cut(s) 399, 654
Psp124BI GAGCTC 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 5, 381
PspFI CCCAGC 3 cut(s) 267, 475, 1027
PspGI CCWGG 2 cut(s) 5, 381
PspN4I GGNNCC 6 cut(s) 340, 380, 473, 474, 726, 922
PspPI GGNCC 3 cut(s) 9, 472, 712
PspPPI RGGWCCY 1 cut(s) 472
PstI CTGCAG 3 cut(s) 82, 401, 1000
PstNI CAGNNNCTG 1 cut(s) 995
PvuII CAGCTG 1 cut(s) 1001
RruI TCGCGA 2 cut(s) 57, 586
RsaI GTAC 2 cut(s) 720, 934
RsaNI GTAC 2 cut(s) 719, 933
RseI CAYNNNNRTG 4 cut(s) 361, 684, 687, 891
SacI GAGCTC 1 cut(s) 467
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 1058, 1063
Sau3AI GATC 3 cut(s) 196, 841, 853
Sau96I GGNCC 3 cut(s) 9, 472, 712
ScaI AGTACT 1 cut(s) 934
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 7, 383, 711
SduI GDGCHC 2 cut(s) 467, 961
SfaNI GCATC 2 cut(s) 95, 970
SfcI CTRYAG 3 cut(s) 78, 397, 996
SfoI GGCGCC 1 cut(s) 726
SgrAI CRCCGGYG 1 cut(s) 405
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 4 cut(s) 361, 684, 687, 891
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SpeI ACTAGT 4 cut(s) 548, 653, 926, 1010
SphI GCATGC 1 cut(s) 46
Sse9I AATT 3 cut(s) 610, 1051, 1060
SspDI GGCGCC 1 cut(s) 724
SspI AATATT 1 cut(s) 874
SspMI CTAG 4 cut(s) 549, 654, 927, 1011
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 3 cut(s) 5, 381, 709
TaaI ACNGT 3 cut(s) 191, 230, 815
TaiI ACGT 3 cut(s) 63, 365, 459
TaqI TCGA 2 cut(s) 748, 969
TasI AATT 3 cut(s) 610, 1051, 1060
TatI WGTACW 2 cut(s) 718, 932
TauI GCSGC 6 cut(s) 86, 499, 512, 515, 518, 995
Tru1I TTAA 2 cut(s) 1058, 1063
Tru9I TTAA 2 cut(s) 1058, 1063
TscAI CASTG 2 cut(s) 196, 363
TseFI GTSAC 2 cut(s) 401, 656
Tsp45I GTSAC 2 cut(s) 401, 656
TspDTI ATGAA 4 cut(s) 194, 302, 966, 1044
TspRI CASTG 2 cut(s) 196, 363
VpaK11BI GGWCC 1 cut(s) 472
XceI RCATGY 2 cut(s) 46, 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 533
XspI CTAG 4 cut(s) 549, 654, 927, 1011
ZraI GACGTC 1 cut(s) 61
ZrmI AGTACT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.