Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Reverse (-)

4310254 .. 4312066

Gene Structure 1813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTAATCGTTTCAGATCAGGGATCTCCTTCTTCAAGACCATCGCCGTAACAGATTCTGTCTCCTCCGTTAGATCCAAGTCGCTTTTCCCAGCGTTGAGAACTTATGCAACTGCTTCTGCTCAAACAACCGCTAATGTTAAGGTGCCTATTGCTTTAGTTGGTGAAAATGGGAACTTTGCTTCATGGCTATACATTGCAGCTGTGAAAATGAATTCCTTGGAAAAGATTGAGACGGATCTTTCTGAGATGATTGAGGCAATGAAGACAGCTCCTATTTTTGCTCAGTTTACAAAGGATCCCTCTGTTCCTAGAGGGACAAGATTGGCTGCTATTAGGGATGCTTGTGATCAAGCAAAGTTTGCCGAACCCACTAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGAAAGCTGAAGAACCTAGATGCCATTGTGAAGAAATTTATGCAGCTGACAAACGCACATAGGGGAGATGTCAAAGTTTTGGTTACCACAGTCATTCCGCTTCCCCCTGCTGAGGAGAAAGAACTGACTGAGACGCTTCAGGAGATCATTGGAGCAGGGAAGAAAATCACTGTGGAACAAAAGATTGATCCAAGTATCTACGGTGGACTAATCGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGGGCACAACAGATGGAGAGGCTCCTCCGTGAACCTGTTGACTTCAACAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

238

Amino Acids

26.32

Weight (kDa)

9.25

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	60 - 228	3.4e-39	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	2 cut(s)	132, 503
AclWI	GGATC	6 cut(s)	32, 69, 246, 293, 306, 587
AcsI	RAATTY	2 cut(s)	214, 440
AcuI	CTGAAG	2 cut(s)	434, 527
AfiI	CCNNNNNNNGG	2 cut(s)	517, 634
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	2 cut(s)	37, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	5 cut(s)	203, 272, 398, 412, 451
AluI	AGCT	5 cut(s)	203, 272, 398, 412, 451
Alw26I	GTCTC	3 cut(s)	67, 227, 530
AlwI	GGATC	6 cut(s)	32, 69, 246, 293, 306, 587
AlwNI	CAGNNNCTG	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	200, 329, 448
ApoI	RAATTY	2 cut(s)	214, 440
AsuHPI	GGTGA	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	667
BamHI	GGATCC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	212, 316, 460
BccI	CCATC	2 cut(s)	50, 667
BceAI	ACGGC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	67, 227, 530
BfaI	CTAG	2 cut(s)	312, 422
BisI	GCNGC	3 cut(s)	201, 330, 449
BlsI	GCNGC	3 cut(s)	202, 331, 450
BmiI	GGNNCC	3 cut(s)	147, 300, 683
BmsI	GCATC	2 cut(s)	331, 415
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 634
Bse3DI	GCAATG	2 cut(s)	195, 267
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	517, 634
BseMI	GCAATG	2 cut(s)	195, 267
BseMII	CTCAG	5 cut(s)	237, 299, 390, 507, 525
BseRI	GAGGAG	3 cut(s)	55, 533, 674
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	212, 316, 460
BseYI	CCCAGC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	517, 634
BsmAI	GTCTC	3 cut(s)	67, 227, 530
BsmBI	CGTCTC	2 cut(s)	227, 530
BsmFI	GGGAC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
BspACI	CCGC	2 cut(s)	132, 503
BspCNI	CTCAG	5 cut(s)	238, 298, 391, 508, 526
BspLI	GGNNCC	3 cut(s)	147, 300, 683
BspPI	GGATC	6 cut(s)	32, 69, 246, 293, 306, 587
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	195, 267
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	496, 577, 608
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstDEI	CTNAG	6 cut(s)	246, 285, 375, 399, 516, 534
BstEII	GGTNACC	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	8 cut(s)	20, 27, 77, 241, 301, 352, 552, 595
BstMAI	GTCTC	3 cut(s)	67, 227, 530
BstMBI	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	649
BstPI	GGTNACC	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	3 cut(s)	212, 316, 460
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	4 cut(s)	24, 74, 238, 298
BstYI	RGATCY	4 cut(s)	24, 74, 238, 298
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	59
CseI	GACGC	1 cut(s)	547
CviAII	CATG	2 cut(s)	186, 646
CviJI	RGCY	9 cut(s)	5, 190, 203, 272, 329, 398, 412, 451, 682
CviKI_1	RGCY	9 cut(s)	5, 190, 203, 272, 329, 398, 412, 451, 682
DdeI	CTNAG	6 cut(s)	246, 285, 375, 399, 516, 534
DpnI	GATC	8 cut(s)	19, 26, 76, 240, 300, 351, 551, 594
DpnII	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
Eco130I	CCWWGG	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	434, 527
Eco91I	GGTNACC	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	2 cut(s)	227, 530
FaeI	CATG	2 cut(s)	189, 649
FaiI	YATR	6 cut(s)	108, 187, 193, 446, 465, 647
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	185, 645
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	201, 330, 449
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	201, 330, 449
FspBI	CTAG	2 cut(s)	312, 422
GluI	GCNGC	3 cut(s)	201, 330, 449
GsaI	CCCAGC	1 cut(s)	95
HgaI	GACGC	1 cut(s)	547
Hin1II	CATG	2 cut(s)	189, 649
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	4 cut(s)	291, 611, 692, 700
Hpy188I	TCNGA	3 cut(s)	17, 247, 716
Hpy188III	TCNNGA	3 cut(s)	37, 545, 655
Hpy8I	GTNNAC	4 cut(s)	291, 611, 692, 700
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	3 cut(s)	496, 577, 608
HpyCH4V	TGCA	3 cut(s)	110, 200, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	6 cut(s)	246, 285, 375, 399, 516, 534
Hsp92II	CATG	2 cut(s)	189, 649
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
LmnI	GCTCC	3 cut(s)	277, 557, 687
LpnPI	CCDG	7 cut(s)	6, 105, 525, 530, 546, 640, 708
Lsp1109I	GCAGC	3 cut(s)	212, 316, 460
LweI	GCATC	2 cut(s)	331, 415
MaeI	CTAG	2 cut(s)	312, 422
MaeIII	GTNAC	2 cut(s)	49, 487
MalI	GATC	8 cut(s)	19, 26, 76, 240, 300, 351, 551, 594
MboI	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
MboII	GAAGA	5 cut(s)	25, 277, 427, 448, 577
MflI	RGATCY	4 cut(s)	24, 74, 238, 298
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	2 cut(s)	214, 440
MmeI	TCCRAC	2 cut(s)	621, 652
MnlI	CCTC	8 cut(s)	76, 250, 308, 313, 395, 511, 672, 695
MseI	TTAA	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	203, 451
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
NlaIII	CATG	2 cut(s)	189, 649
NlaIV	GGNNCC	3 cut(s)	147, 300, 683
NspI	RCATGY	1 cut(s)	649
PciI	ACATGT	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	202, 331, 450
PscI	ACATGT	1 cut(s)	645
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	147, 300, 683
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	4 cut(s)	24, 74, 238, 298
PvuII	CAGCTG	2 cut(s)	203, 451
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	201, 330, 449
Sau3AI	GATC	8 cut(s)	17, 24, 74, 238, 298, 349, 549, 592
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	331, 415
Sse9I	AATT	2 cut(s)	214, 440
SsiI	CCGC	2 cut(s)	132, 503
SspMI	CTAG	2 cut(s)	312, 422
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	496, 577, 608
TasI	AATT	2 cut(s)	214, 440
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	3 cut(s)	200, 329, 448
TspDTI	ATGAA	3 cut(s)	174, 227, 278
TspGWI	ACGGA	3 cut(s)	58, 251, 677
TspRI	CASTG	1 cut(s)	580
XapI	RAATTY	2 cut(s)	214, 440
XceI	RCATGY	1 cut(s)	649
XspI	CTAG	2 cut(s)	312, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.