Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Forward (+)

1716483 .. 1720550

Gene Structure 4068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCATTTGCTAATCGAATCCGATCGAGCCTCCCTCTCCTCTCCAAGATTCTCAAATCCGATTCACTCTCCGCCGCCCCCCGCGCTCTACTTTGCCCTACTTTCTCCGATTCCGAGTTGTCGAGGAACTTTTCCACTGCTCCCGGGAAGAAGGATGTGAAGGTCAAGGTGCCTTTGGCTTTGTTTGGGGGCTCTGGGAACTATGCCTCTGCTTTGTACATTGCAGCAGTGAAAACTAATTCCTTGGACAAGGTTGAGTCTGAGATTCTCGACTTTGTTGGGGCAATGACGAAAAGCCCTATGTTTTCTCAGTTCACAAAGGATTTGTCAGTGCCTGCAGATACTAGAAAGAAGGCAATTGAAGATATTTCTGCTCAAGCTAAATTTTCAGAAATTACAAAGAACTTCTTGCTTGTCTTGGCTGAGAATGGAAGGCTAAGGAACATTGATACCATAGCGAAGAGATTTGTGGAATTGACCATGGCACATAAGGGAGTAGTGAAAGTTATTGTGACATCTGTCATTCCCCTCCCTGCTGAAGAGGAGAAAGAATTGAAGGAGACACTGCAGGACTTAATTGGAAAAGGGAAGACAGTCAAGCTTGAACAGAAGATCGATACCAGTATCATGGGTGGGCTTGTGGTAGAGTTTCAGCAGAAGGTGTTTGACATGTCCATCAAGACTAGGGCACGCCAGTTTGAGAGGTACTTGCGGGATCCCATTCACTGGGACAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

246

Amino Acids

27.28

Weight (kDa)

9.46

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	66 - 236	6.4e-43	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccB7I	CCANNNNNTGG	1 cut(s)	726
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	72, 75, 82, 712
AclWI	GGATC	2 cut(s)	710, 723
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	2 cut(s)	218, 707
AfiI	CCNNNNNNNGG	1 cut(s)	726
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	3 cut(s)	362, 556, 605
AluBI	AGCT	2 cut(s)	380, 601
AluI	AGCT	2 cut(s)	380, 601
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	2 cut(s)	710, 723
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	144, 145
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	691
BamHI	GGATCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	683
BcnI	CCSGG	2 cut(s)	144, 145
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	345, 684
BfmI	CTRYAG	2 cut(s)	336, 566
BisI	GCNGC	2 cut(s)	75, 225
BlsI	GCNGC	2 cut(s)	76, 226
Bme1390I	CCNGG	2 cut(s)	144, 145
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	171, 717
BmrFI	CCNGG	2 cut(s)	144, 145
BmrI	ACTGGG	1 cut(s)	736
BmuI	ACTGGG	1 cut(s)	736
BoxI	GACNNNNGTC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	596
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	144, 145
Bsa29I	ATCGAT	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	143, 243, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	726
Bse1I	ACTGG	3 cut(s)	621, 694, 731
Bse3DI	GCAATG	2 cut(s)	219, 291
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	143, 243, 480
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	726
BseMI	GCAATG	2 cut(s)	219, 291
BseMII	CTCAG	3 cut(s)	252, 323, 414
BseNI	ACTGG	3 cut(s)	621, 694, 731
BseRI	GAGGAG	2 cut(s)	29, 557
BseSI	GKGCMC	1 cut(s)	691
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	615
BsiEI	CGRYCG	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	726
BsmAI	GTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	194, 691
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	23, 612, 715
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	4 cut(s)	72, 75, 82, 712
BspCNI	CTCAG	3 cut(s)	253, 322, 415
BspDI	ATCGAT	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	171, 717
BspMAI	CTGCAG	2 cut(s)	340, 570
BspPI	GGATC	2 cut(s)	710, 723
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	219, 291
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	621, 694, 731
BssECI	CCNNGG	3 cut(s)	143, 243, 480
BssMI	GATC	3 cut(s)	23, 612, 715
BssT1I	CCWWGG	2 cut(s)	243, 480
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	2 cut(s)	455, 534
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	336, 691
BstDEI	CTNAG	4 cut(s)	261, 309, 423, 437
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	26, 615, 718
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	3 cut(s)	23, 612, 715
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	673
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	142, 143
BstSFI	CTRYAG	2 cut(s)	336, 566
BstSLI	GKGCMC	1 cut(s)	691
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	615
BsuTUI	ATCGAT	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	3 cut(s)	135, 234, 563
BtsIMutI	CAGTG	5 cut(s)	135, 234, 336, 563, 724
Cac8I	GCNNGC	2 cut(s)	336, 691
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	86
Cfr9I	CCCGGG	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	217, 706
CviAII	CATG	3 cut(s)	481, 628, 670
CviJI	RGCY	9 cut(s)	30, 179, 192, 297, 380, 422, 436, 601, 637
CviKI_1	RGCY	9 cut(s)	30, 179, 192, 297, 380, 422, 436, 601, 637
CviQI	GTAC	2 cut(s)	217, 706
DdeI	CTNAG	4 cut(s)	261, 309, 423, 437
DpnI	GATC	3 cut(s)	25, 614, 717
DpnII	GATC	3 cut(s)	23, 612, 715
Eam1104I	CTCTTC	2 cut(s)	455, 534
EarI	CTCTTC	2 cut(s)	455, 534
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	243, 480
Eco24I	GRGCYC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	143
EcoT14I	CCWWGG	2 cut(s)	243, 480
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	243, 480
FaeI	CATG	3 cut(s)	484, 631, 673
FaiI	YATR	7 cut(s)	204, 302, 455, 482, 489, 629, 671
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	3 cut(s)	480, 627, 669
FauI	CCCGC	2 cut(s)	89, 705
Fnu4HI	GCNGC	2 cut(s)	75, 225
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	75, 225
FspBI	CTAG	2 cut(s)	345, 684
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	75, 225
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	484, 631, 673
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	6 cut(s)	18, 49, 62, 110, 257, 265
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	6 cut(s)	23, 61, 109, 115, 262, 391
Hpy188III	TCNNGA	2 cut(s)	269, 679
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	6 cut(s)	145, 154, 346, 426, 550, 652
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	224, 338, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	261, 309, 423, 437
Hsp92II	CATG	3 cut(s)	484, 631, 673
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	23, 612, 715
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	157, 180, 348, 546, 554, 634, 707, 712
Lsp1109I	GCAGC	1 cut(s)	236
MaeI	CTAG	2 cut(s)	345, 684
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	25, 614, 717
MboI	GATC	3 cut(s)	23, 612, 715
MboII	GAAGA	6 cut(s)	160, 374, 472, 551, 601, 622
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	2 cut(s)	194, 691
MluCI	AATT	7 cut(s)	238, 357, 383, 393, 473, 551, 576
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	8 cut(s)	41, 45, 50, 117, 217, 535, 539, 696
MseI	TTAA	1 cut(s)	575
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	144, 145
MunI	CAATTG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	144, 145
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	23, 612, 715
NlaIII	CATG	3 cut(s)	484, 631, 673
NlaIV	GGNNCC	2 cut(s)	171, 717
NmuCI	GTSAC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	673
PciI	ACATGT	1 cut(s)	669
PfeI	GAWTC	5 cut(s)	18, 49, 62, 110, 265
PflMI	CCANNNNNTGG	1 cut(s)	726
PkrI	GCNGC	2 cut(s)	76, 226
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	669
PshAI	GACNNNNGTC	1 cut(s)	518
PspN4I	GGNNCC	2 cut(s)	171, 717
PstI	CTGCAG	2 cut(s)	340, 570
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	715
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	218, 707
RsaNI	GTAC	2 cut(s)	217, 706
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	2 cut(s)	75, 225
Sau3AI	GATC	3 cut(s)	23, 612, 715
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	144, 145
SduI	GDGCHC	2 cut(s)	194, 691
SetI	ASST	8 cut(s)	165, 171, 255, 382, 603, 663, 707, 738
SfcI	CTRYAG	2 cut(s)	336, 566
SmaI	CCCGGG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	7 cut(s)	238, 357, 383, 393, 473, 551, 576
SsiI	CCGC	4 cut(s)	72, 75, 82, 712
SspMI	CTAG	2 cut(s)	345, 684
StyD4I	CCNGG	2 cut(s)	142, 143
StyI	CCWWGG	2 cut(s)	243, 480
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	5 cut(s)	16, 26, 122, 270, 615
TasI	AATT	7 cut(s)	238, 357, 383, 393, 473, 551, 576
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	5 cut(s)	18, 49, 62, 110, 265
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	5 cut(s)	142, 234, 336, 570, 731
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	511
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	5 cut(s)	142, 234, 336, 570, 731
Van91I	CCANNNNNTGG	1 cut(s)	726
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	673
XmaI	CCCGGG	1 cut(s)	143
XspI	CTAG	2 cut(s)	345, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.