Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Reverse (-)

66495260 .. 66499228

Gene Structure 3969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTGGCTATTTCATTTCTCACTGCTCCGTTTGTACTATCGGTCTTCTTCACATTTCGAAGCTCTGTAGCTGTTTTAGGGTTTCTCCTGAAAATGGCATTCGCTAATCGAATCCGATCGAGCCTCCCTCTCCTCTCCAAGATTCTCAAATCCGATTCACTCTCCGCCGCCAATGCCTCCGCCGCCCCCCGTGCTCTACTTTGCCCTACTCTCTCCGATTCCGAGTTGTCGAGGAGCTTTTCCACTGCACCCGGTAAGAAGGATGTGAAGGTCAAGGTGCCTTTGGCTTTGTTTGGGGGCTCTGGGAACTATGCCTCTGCTTTGTACATTGCTGCAGTGAAAACTAATTCCTTGGACAAGGTTGAGTCTGAGATTCTTGACTTTGTTGGGGCAATGACGAAAAGTCCTATGTTTTCTCAGTTCACAAAGGATTTGTCAGTGCCTGCAGATACTAGAAAGAAGGCAATTGAAGATATTTCTGCTCAAGCTAAATTTTCAGAAATTACAAAGAACTTCTTGATTGTCTTGGCTGAGAATGGAAGGCTAAGGAACATTGATACCATAGCGAAGAGATTTGTGGAATTGACCATGGCACATAAGGGAGTAGTGAAAGTTATTGTGACATCTGTCATTCCCCTCCCTGCTGAAGAGGAGAAAGAATTGAAGGAGACACTGCAGGACTTAATTGGAAAAGGGAAGACAGTCAAGCTCGAACAGAAGATCGATATCAGTATCATGGGTGGGCTTGTGGTAGAGTTTCAGCAGAAGGTGTTTGACATGTCCATCAAGACTAGGGCACGCCAGTTTGAGAGGTACTTGCGGGATCCCATTCACTGGGATAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

283

Amino Acids

31.05

Weight (kDa)

9.59

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	102 - 272	5e-42	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	834
AciI	CCGC	5 cut(s)	165, 168, 180, 183, 820
AclWI	GGATC	2 cut(s)	818, 831
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	3 cut(s)	36, 326, 815
AfiI	CCNNNNNNNGG	2 cut(s)	94, 834
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	2 cut(s)	470, 664
AhdI	GACNNNNNGTC	1 cut(s)	402
AluBI	AGCT	5 cut(s)	63, 71, 237, 488, 709
AluI	AGCT	5 cut(s)	63, 71, 237, 488, 709
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	818, 831
AlwNI	CAGNNNCTG	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AsuC2I	CCSGG	1 cut(s)	252
AsuII	TTCGAA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	799
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	2 cut(s)	37, 704
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	791
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	453, 792
BfmI	CTRYAG	4 cut(s)	66, 333, 444, 674
BisI	GCNGC	3 cut(s)	168, 183, 333
BlsI	GCNGC	3 cut(s)	169, 184, 334
Bme1390I	CCNGG	1 cut(s)	252
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	279, 825
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	844
BoxI	GACNNNNGTC	1 cut(s)	626
BpiI	GAAGAC	2 cut(s)	37, 704
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
Bpu10I	CCTNAGC	1 cut(s)	545
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	725
BsaJI	CCNNGG	2 cut(s)	351, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 834
Bse1I	ACTGG	2 cut(s)	802, 839
Bse3DI	GCAATG	2 cut(s)	327, 399
Bse8I	GATNNNNATC	1 cut(s)	725
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	351, 588
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	725
BseLI	CCNNNNNNNGG	2 cut(s)	94, 834
BseMI	GCAATG	2 cut(s)	327, 399
BseMII	CTCAG	3 cut(s)	360, 431, 522
BseNI	ACTGG	2 cut(s)	802, 839
BseRI	GAGGAG	3 cut(s)	122, 247, 665
BseSI	GKGCMC	1 cut(s)	799
BseXI	GCAGC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	277
BshVI	ATCGAT	1 cut(s)	723
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	94, 834
BsmAI	GTCTC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	3 cut(s)	196, 302, 799
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	116, 720, 823
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	5 cut(s)	165, 168, 180, 183, 820
BspCNI	CTCAG	3 cut(s)	361, 430, 523
BspDI	ATCGAT	1 cut(s)	723
BspLI	GGNNCC	2 cut(s)	279, 825
BspMAI	CTGCAG	3 cut(s)	337, 448, 678
BspPI	GGATC	2 cut(s)	818, 831
BspT104I	TTCGAA	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	327, 399
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	802, 839
BssECI	CCNNGG	2 cut(s)	351, 588
BssMI	GATC	3 cut(s)	116, 720, 823
BssT1I	CCWWGG	2 cut(s)	351, 588
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	2 cut(s)	563, 642
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	444, 799
BstDEI	CTNAG	4 cut(s)	369, 417, 531, 545
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	119, 723, 826
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	3 cut(s)	116, 720, 823
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 191
BstNSI	RCATGY	1 cut(s)	781
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	4 cut(s)	66, 333, 444, 674
BstSLI	GKGCMC	1 cut(s)	799
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	2 cut(s)	37, 704
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
Bsu15I	ATCGAT	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	723
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	4 cut(s)	21, 243, 342, 671
BtsIMutI	CAGTG	6 cut(s)	21, 243, 342, 444, 671, 832
Cac8I	GCNNGC	2 cut(s)	444, 799
CaiI	CAGNNNCTG	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	723
Csp6I	GTAC	3 cut(s)	35, 325, 814
CviAII	CATG	3 cut(s)	589, 736, 778
CviQI	GTAC	3 cut(s)	35, 325, 814
DdeI	CTNAG	4 cut(s)	369, 417, 531, 545
DpnI	GATC	3 cut(s)	118, 722, 825
DpnII	GATC	3 cut(s)	116, 720, 823
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	563, 642
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	2 cut(s)	563, 642
EciI	GGCGGA	2 cut(s)	154, 169
Eco130I	CCWWGG	2 cut(s)	351, 588
Eco24I	GRGCYC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	727
Eco57I	CTGAAG	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	351, 588
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	351, 588
FaeI	CATG	3 cut(s)	592, 739, 781
FaiI	YATR	7 cut(s)	312, 410, 563, 590, 597, 737, 779
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	3 cut(s)	588, 735, 777
FauI	CCCGC	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	168, 183, 333
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	168, 183, 333
FspBI	CTAG	2 cut(s)	453, 792
GluI	GCNGC	3 cut(s)	168, 183, 333
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	3 cut(s)	592, 739, 781
HinfI	GANTC	6 cut(s)	111, 142, 155, 218, 365, 373
HpaII	CCGG	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	6 cut(s)	116, 154, 217, 223, 370, 499
Hpy188III	TCNNGA	4 cut(s)	88, 377, 517, 787
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	6 cut(s)	253, 262, 454, 534, 658, 760
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	4 cut(s)	248, 335, 446, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 191
HpyF3I	CTNAG	4 cut(s)	369, 417, 531, 545
Hsp92II	CATG	3 cut(s)	592, 739, 781
Kzo9I	GATC	3 cut(s)	116, 720, 823
LmnI	GCTCC	2 cut(s)	31, 234
LpnPI	CCDG	8 cut(s)	101, 265, 288, 456, 654, 662, 815, 820
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	453, 792
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	3 cut(s)	118, 722, 825
MboI	GATC	3 cut(s)	116, 720, 823
MboII	GAAGA	7 cut(s)	37, 40, 482, 580, 659, 709, 730
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	3 cut(s)	196, 302, 799
MluCI	AATT	7 cut(s)	346, 465, 491, 501, 581, 659, 684
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	9 cut(s)	134, 138, 143, 187, 225, 325, 643, 647, 804
MseI	TTAA	1 cut(s)	683
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	252
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 191
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	3 cut(s)	116, 720, 823
NlaIII	CATG	3 cut(s)	592, 739, 781
NlaIV	GGNNCC	2 cut(s)	279, 825
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	58
PciI	ACATGT	1 cut(s)	777
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	5 cut(s)	111, 142, 155, 218, 373
PflMI	CCANNNNNTGG	1 cut(s)	834
PkrI	GCNGC	3 cut(s)	169, 184, 334
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	777
PshAI	GACNNNNGTC	1 cut(s)	626
PspN4I	GGNNCC	2 cut(s)	279, 825
PstI	CTGCAG	3 cut(s)	337, 448, 678
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	823
PvuI	CGATCG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	36, 326, 815
RsaNI	GTAC	3 cut(s)	35, 325, 814
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	3 cut(s)	168, 183, 333
Sau3AI	GATC	3 cut(s)	116, 720, 823
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	3 cut(s)	196, 302, 799
SfcI	CTRYAG	4 cut(s)	66, 333, 444, 674
SfuI	TTCGAA	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	7 cut(s)	346, 465, 491, 501, 581, 659, 684
SsiI	CCGC	5 cut(s)	165, 168, 180, 183, 820
SspMI	CTAG	2 cut(s)	453, 792
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	2 cut(s)	351, 588
TaaI	ACNGT	1 cut(s)	703
TaqI	TCGA	6 cut(s)	58, 109, 119, 230, 711, 723
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	7 cut(s)	346, 465, 491, 501, 581, 659, 684
TatI	WGTACW	2 cut(s)	34, 324
TauI	GCSGC	2 cut(s)	170, 185
TfiI	GAWTC	5 cut(s)	111, 142, 155, 218, 373
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	6 cut(s)	28, 250, 342, 444, 678, 839
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	619
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	6 cut(s)	28, 250, 342, 444, 678, 839
Van91I	CCANNNNNTGG	1 cut(s)	834
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	1 cut(s)	781
XspI	CTAG	2 cut(s)	453, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.