Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Reverse (-)

24075972 .. 24080291

Gene Structure 4320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCATTTGCTTCTCGAATCCGATCGAGCCTGCCTCTCGTCACCAAGATTCTCAAATCGGATTCAGTCTCCGCCGCCGCCAACGGATCCATCGCCCACCGCTCCGTGCTTTGCCCTACTTTCATCAATTCTGAGCCATCCAGGAACTTTTCTACCGCGCAAGGGAAGAAGGAAGTGAAGGTTAAGGTGCCTCTGGTTTTGTTTGGGGGTTCTGGGAACTATGCCTCTGCTTTGTACATTGCTGCAGTAAAAGCTAATGCCTTGGAAAAGGTTGAGTCTGAGATTTTTGCCATTGTTGAGGCTATGAAGAAAAGTCCTACCTTTTCTCAGTTCACAAGGGATTTGTCAGTGCCAGCAGATACTAGAGTGAAGGCAATCCATGAAATTACTGCTGAAGCTAAATTTTCAGAAATTACAAAGAACTTTTTGGTTGTCTTGGCTCAGAATGGGAGGTTAAGGAACCTTGAAACCATATCAAAGAGATTTGCGGAGTTGACCATGGCACATAAGGGAGAAGTGAAAGCTATCGTCACATCTGTCATTCCCCTTCCCGCCGAAGAGGAGAAAGAATTGAAGGACACACTGCAGGAATTAATTGGACAGGGGAAGAAGGTCATTCTTGAACAAAAGATTGATCCTAGTATTTTGGGTGGGCTCGTGATAGAGTTTGATAAAAAGGTGTTTGACATGTCCATTAAGAGTAGGGCACGCCAGATGGAGAGGTATTTGCGGGAACCTGTAAACTTTGACAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

253

Amino Acids

27.79

Weight (kDa)

9.48

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	102
AccII	CGCG	1 cut(s)	158
AciI	CCGC	8 cut(s)	72, 75, 78, 100, 156, 488, 552, 730
AclWI	GGATC	3 cut(s)	81, 94, 629
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	3 cut(s)	467, 574, 623
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	254, 398, 524
AluI	AGCT	3 cut(s)	254, 398, 524
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	3 cut(s)	81, 94, 629
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	401
AseI	ATTAAT	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BamHI	GGATCC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	657
BauI	CACGAG	1 cut(s)	656
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	3 cut(s)	98, 145, 709
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	363, 639
BfmI	CTRYAG	2 cut(s)	243, 584
BisI	GCNGC	3 cut(s)	75, 78, 243
BlsI	GCNGC	3 cut(s)	76, 79, 244
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	4 cut(s)	88, 189, 461, 735
BmrFI	CCNGG	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BsaJI	CCNNGG	2 cut(s)	261, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	261, 498
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	123, 270, 341, 455
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	657, 709
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	23, 86, 634
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	8 cut(s)	72, 75, 78, 100, 156, 488, 552, 730
BspCNI	CTCAG	4 cut(s)	124, 271, 340, 454
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	88, 189, 461, 735
BspMAI	CTGCAG	2 cut(s)	247, 588
BspPI	GGATC	3 cut(s)	81, 94, 629
BspT107I	GGYRCC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	261, 498
BssMI	GATC	3 cut(s)	23, 86, 634
BssSI	CACGAG	1 cut(s)	656
BssT1I	CCWWGG	2 cut(s)	261, 498
Bst2BI	CACGAG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	552
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	32, 354, 709
BstDEI	CTNAG	4 cut(s)	132, 279, 327, 441
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	26, 89, 637
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	23, 86, 634
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	2 cut(s)	243, 584
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	354, 581
Cac8I	GCNNGC	3 cut(s)	32, 354, 709
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	3 cut(s)	380, 499, 688
CviJI	RGCY	8 cut(s)	30, 136, 254, 302, 398, 440, 524, 655
CviKI_1	RGCY	8 cut(s)	30, 136, 254, 302, 398, 440, 524, 655
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	4 cut(s)	132, 279, 327, 441
DpnI	GATC	3 cut(s)	25, 88, 636
DpnII	GATC	3 cut(s)	23, 86, 634
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	261, 498
Eco24I	GRGCYC	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	2 cut(s)	261, 498
EcoT38I	GRGCYC	1 cut(s)	657
ErhI	CCWWGG	2 cut(s)	261, 498
FaeI	CATG	3 cut(s)	383, 502, 691
FaiI	YATR	7 cut(s)	222, 305, 381, 473, 500, 507, 689
FatI	CATG	3 cut(s)	379, 498, 687
FauI	CCCGC	2 cut(s)	559, 723
Fnu4HI	GCNGC	3 cut(s)	75, 78, 243
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	75, 78, 243
FspBI	CTAG	2 cut(s)	363, 639
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	75, 78, 243
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	383, 502, 691
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	4 cut(s)	18, 49, 62, 275
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	333, 495, 742
Hpy188I	TCNGA	6 cut(s)	23, 61, 133, 280, 409, 444
Hpy188III	TCNNGA	3 cut(s)	15, 620, 658
Hpy8I	GTNNAC	3 cut(s)	333, 495, 742
HpyAV	CCTTC	6 cut(s)	163, 172, 364, 557, 568, 604
HpyCH4V	TGCA	2 cut(s)	245, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	4 cut(s)	132, 279, 327, 441
Hsp92II	CATG	3 cut(s)	383, 502, 691
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	23, 86, 634
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	363, 639
MaeIII	GTNAC	2 cut(s)	40, 529
MalI	GATC	3 cut(s)	25, 88, 636
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	3 cut(s)	23, 86, 634
MboII	GAAGA	4 cut(s)	178, 319, 569, 619
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	657, 709
MluCI	AATT	7 cut(s)	127, 384, 401, 411, 569, 590, 594
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	7 cut(s)	45, 201, 235, 292, 444, 553, 714
MseI	TTAA	4 cut(s)	183, 455, 593, 696
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	23, 86, 634
NlaIII	CATG	3 cut(s)	383, 502, 691
NlaIV	GGNNCC	4 cut(s)	88, 189, 461, 735
NmuCI	GTSAC	2 cut(s)	40, 529
NspI	RCATGY	1 cut(s)	691
PciI	ACATGT	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	18, 49, 62
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	76, 79, 244
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	687
PshBI	ATTAAT	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	88, 189, 461, 735
PstI	CTGCAG	2 cut(s)	247, 588
PsuI	RGATCY	1 cut(s)	86
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	4 cut(s)	183, 455, 593, 696
SatI	GCNGC	3 cut(s)	75, 78, 243
Sau3AI	GATC	3 cut(s)	23, 86, 634
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	657, 709
SfcI	CTRYAG	2 cut(s)	243, 584
Sse9I	AATT	7 cut(s)	127, 384, 401, 411, 569, 590, 594
SsiI	CCGC	8 cut(s)	72, 75, 78, 100, 156, 488, 552, 730
SspMI	CTAG	2 cut(s)	363, 639
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	2 cut(s)	261, 498
TaqI	TCGA	2 cut(s)	16, 26
TasI	AATT	7 cut(s)	127, 384, 401, 411, 569, 590, 594
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	3 cut(s)	18, 49, 62
Tru1I	TTAA	4 cut(s)	183, 455, 593, 696
Tru9I	TTAA	4 cut(s)	183, 455, 593, 696
TscAI	CASTG	2 cut(s)	354, 588
TseFI	GTSAC	2 cut(s)	40, 529
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	2 cut(s)	40, 529
TspDTI	ATGAA	3 cut(s)	112, 320, 396
TspGWI	ACGGA	2 cut(s)	94, 99
TspRI	CASTG	2 cut(s)	354, 588
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	2 cut(s)	363, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.