Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Reverse (-)

6017912 .. 6020027

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCTTCGCTAATCGACTCCGATCCAGCCTCCCTCTCCAAGTCCTCGTTAGCAAGGTTCTCAGATCGGAACCAGTCTCCGCCACCGCCCAGCGGGCAGTAGTTTGCCCTACTTTGTCCAAAACCAATAACAAATCCGATGAATCGTCAAGGAACTTCGATTCTATTTCCTCTAAGAATAACAAGGAAGAGAAGGTGAAGTTGCCTTTGGTTTTGTTTGGGGGGTATGGGAAATATGCGTTTGCTTTGTACATTGCTGCAGTGAAAACTGATTCCTTGGACAAAGTCGAGTCTGAGATTCTCGACTTTGTTCAGTCTATCAAGAACACTCCTGAGCTTTCTCAGTTCACCAAGGATCCGACGGTGCCTGCTCGTTCTAGAGTGAAGGCAATGGCAGAGATTTCGTCTCAGTTTGAACATTCAGAGACTACAAAGAACTTCTTGGCTGTGTTGGCTGAACATGGAGGTCTGAACCACGTTGAAGCCATTGCAAAAAAATTTGTAGAGTTGACTATGGCACATAAGGGAATAGTGGAAGTTAATGTGACTTCTGTGATTCCCCTACCTGCTGAAGAGGAGAAAGAATTGAAGGAGACAATGCAGGAGATACTTGGACAGGGGAAGACAGTGAAGCTTGAACAGAAGATCGATCCGGGGATTCTAGGAGGTATTGTGGTAGAGTATCAGCAGAAGATGGTGGACATGTCCATCAAGACTAGGGCACGCCAGATGGAGAGGTACTTGCGGGATCCCAAAAATTGGGACGAGCTCCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

260

Amino Acids

28.92

Weight (kDa)

8.45

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	78 - 248	1.1e-42	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	759
AciI	CCGC	4 cut(s)	81, 87, 94, 745
AclWI	GGATC	6 cut(s)	18, 350, 363, 644, 743, 756
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	2 cut(s)	251, 740
AfiI	CCNNNNNNNGG	2 cut(s)	93, 759
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	4 cut(s)	416, 482, 589, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	337, 634, 769
AluI	AGCT	3 cut(s)	337, 634, 769
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	4 cut(s)	82, 411, 419, 587
AlwI	GGATC	6 cut(s)	18, 350, 363, 644, 743, 756
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	208, 340
BaeGI	GKGCMC	1 cut(s)	724
BamHI	GGATCC	2 cut(s)	355, 748
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	771
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	688, 716, 724
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	4 cut(s)	82, 411, 419, 587
BfaI	CTAG	3 cut(s)	378, 662, 717
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	654
BmiI	GGNNCC	4 cut(s)	72, 357, 366, 750
BmrFI	CCNGG	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	654
Bsa29I	ATCGAT	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	276, 351, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 759
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	3 cut(s)	252, 396, 486
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	276, 351, 653
BseLI	CCNNNNNNNGG	2 cut(s)	93, 759
BseMI	GCAATG	3 cut(s)	252, 396, 486
BseMII	CTCAG	5 cut(s)	76, 285, 324, 356, 422
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	3 cut(s)	590, 761, 764
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	93, 759
BsmAI	GTCTC	4 cut(s)	82, 411, 419, 587
BsmBI	CGTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	724, 771
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
BspACI	CCGC	4 cut(s)	81, 87, 94, 745
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	5 cut(s)	75, 286, 325, 355, 421
BspDI	ATCGAT	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	72, 357, 366, 750
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	6 cut(s)	18, 350, 363, 644, 743, 756
BspT107I	GGYRCC	1 cut(s)	364
BsrDI	GCAATG	3 cut(s)	252, 396, 486
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	276, 351, 653
BssMI	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
BssT1I	CCWWGG	2 cut(s)	276, 351
Bst4CI	ACNGT	2 cut(s)	364, 628
Bst6I	CTCTTC	2 cut(s)	183, 567
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	96, 369, 724
BstDEI	CTNAG	6 cut(s)	62, 174, 294, 333, 342, 408
BstKTI	GATC	6 cut(s)	26, 68, 358, 648, 652, 751
BstMAI	GTCTC	4 cut(s)	82, 411, 419, 587
BstMBI	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 452
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	2 cut(s)	355, 748
BstYI	RGATCY	2 cut(s)	355, 748
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	648
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 633
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	3 cut(s)	96, 369, 724
ClaI	ATCGAT	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	250, 739
CviAII	CATG	2 cut(s)	461, 703
CviJI	RGCY	8 cut(s)	5, 30, 337, 446, 455, 485, 634, 769
CviKI_1	RGCY	8 cut(s)	5, 30, 337, 446, 455, 485, 634, 769
CviQI	GTAC	2 cut(s)	250, 739
DdeI	CTNAG	6 cut(s)	62, 174, 294, 333, 342, 408
DpnI	GATC	6 cut(s)	25, 67, 357, 647, 651, 750
DpnII	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
Eam1104I	CTCTTC	2 cut(s)	183, 567
EarI	CTCTTC	2 cut(s)	183, 567
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	769
Eco130I	CCWWGG	2 cut(s)	276, 351
Eco24I	GRGCYC	1 cut(s)	771
Eco53kI	GAGCTC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	769
EcoT14I	CCWWGG	2 cut(s)	276, 351
EcoT38I	GRGCYC	1 cut(s)	771
ErhI	CCWWGG	2 cut(s)	276, 351
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	2 cut(s)	464, 706
FaiI	YATR	6 cut(s)	228, 237, 462, 515, 522, 704
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	2 cut(s)	460, 702
FauI	CCCGC	2 cut(s)	87, 738
Fnu4HI	GCNGC	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	3 cut(s)	378, 662, 717
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	653
Hin1II	CATG	2 cut(s)	464, 706
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	8 cut(s)	18, 143, 161, 272, 290, 298, 556, 658
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	2 cut(s)	208, 340
Hpy166II	GTNNAC	3 cut(s)	348, 510, 700
Hpy188I	TCNGA	9 cut(s)	23, 65, 70, 139, 295, 360, 424, 471, 779
Hpy188III	TCNNGA	5 cut(s)	302, 322, 332, 378, 712
Hpy8I	GTNNAC	3 cut(s)	348, 510, 700
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	4 cut(s)	16, 187, 379, 583
HpyCH4III	ACNGT	2 cut(s)	364, 628
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	260, 491, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 452
HpyF3I	CTNAG	6 cut(s)	62, 174, 294, 333, 342, 408
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	464, 706
Kzo9I	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
LmnI	GCTCC	1 cut(s)	774
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	378, 662, 717
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	6 cut(s)	25, 67, 357, 647, 651, 750
MboI	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
MboII	GAAGA	5 cut(s)	200, 584, 634, 655, 703
MflI	RGATCY	2 cut(s)	355, 748
MhlI	GDGCHC	2 cut(s)	724, 771
MluCI	AATT	3 cut(s)	497, 584, 757
MlyI	GAGTC	2 cut(s)	12, 299
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	8 cut(s)	41, 45, 56, 181, 458, 568, 659, 729
MseI	TTAA	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	95, 452
NciI	CCSGG	1 cut(s)	654
NdeII	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
NlaIII	CATG	2 cut(s)	464, 706
NlaIV	GGNNCC	4 cut(s)	72, 357, 366, 750
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PfeI	GAWTC	6 cut(s)	143, 161, 272, 298, 556, 658
PflFI	GACNNNGTC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	12, 298
PpsI	GAGTC	2 cut(s)	12, 298
PscI	ACATGT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	771
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	4 cut(s)	72, 357, 366, 750
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	355, 748
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	2 cut(s)	251, 740
RsaNI	GTAC	2 cut(s)	250, 739
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	6 cut(s)	23, 65, 355, 645, 649, 748
SchI	GAGTC	2 cut(s)	12, 299
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	2 cut(s)	724, 771
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	497, 584, 757
SsiI	CCGC	4 cut(s)	81, 87, 94, 745
SspMI	CTAG	3 cut(s)	378, 662, 717
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	2 cut(s)	276, 351
TaaI	ACNGT	2 cut(s)	364, 628
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	5 cut(s)	16, 159, 288, 303, 648
TasI	AATT	3 cut(s)	497, 584, 757
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	6 cut(s)	143, 161, 272, 298, 556, 658
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	267, 633
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	267, 633
Tth111I	GACNNNGTC	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	759
XapI	RAATTY	1 cut(s)	497
XbaI	TCTAGA	1 cut(s)	377
XceI	RCATGY	1 cut(s)	706
XspI	CTAG	3 cut(s)	378, 662, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.