Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Forward (+)

1094079 .. 1105610

Gene Structure 11532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G012700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTTTTGCTAATCGAATCCGATCGAGCCTTCCTCTCGTAACCAAGATTCTCAAATCGGATTCGCTCTCCGCCGCCCACTGGTCCAGTGCCCAGCGGTCTGTACTTTGCCCTACTTTCGCCAATTCTGAGGTACAGAGATTCTCAAATCACAGAAATGCAAACAACAGATTTTTACGTTTGTCAAAGAATTTTTCTACGGCACCTGGGAAGAAGGAAGTGAAGGTTAAGGTGCCTCTGGTGTTGTTTGGGGGTTCTGGGAACTATGCCTCTGCTTTGTACATTGCTGCAGTAAAAGCTAATGCCTTGGAGAAGGTTGAGTCTGAGATTCTTGACATTGTTGAGTCTACGAAGAGAAGTCCTACGTTTTCTCAGTTCACAAAGGATTTGTCAGTGCCAGCAGATACTAGAGTGAAGGCAATCAATGAAATTTCTGCTCAAGCTAAATTTTCAGATGTTACGAAGAACTTTTTGGTTCTCTTGTCTCAGAATGGGAGGCTAAAGAACCTTGAAACCATAGCAAAGAGATTTGTGGAGTTGACCATGGCACATAAGGGAGAAGTGAAAGCTATTGTTACATCTGTCATTCCCCTTCCCGCTGTGGAGGAGAAAGAATTGAAGGAGACACTGCAGGAGTTAATTGGACAGGGAAAGAAGGTCATACTTGAGCAGAAGATTGATCCTAGTATTCTGGGTGGGCTTGTGGTAGAGTTTGATAAGAAGGTGTTTGACATGTCCATTAAGACTAGGGCACGCCAGATGGAGAGGTATTTGCGGGAACCCGCAAACTTTGACAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

268

Amino Acids

29.68

Weight (kDa)

9.79

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	202, 232
AccI	GTMKAC	1 cut(s)	347
AciI	CCGC	6 cut(s)	72, 75, 97, 597, 775, 783
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	3 cut(s)	190, 429, 446
AfaI	GTAC	3 cut(s)	105, 135, 281
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	2 cut(s)	512, 619
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	3 cut(s)	299, 443, 569
AluI	AGCT	3 cut(s)	299, 443, 569
Alw26I	GTCTC	2 cut(s)	489, 617
AlwI	GGATC	1 cut(s)	674
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	3 cut(s)	190, 429, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspS9I	GGNCC	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	2 cut(s)	94, 754
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BanI	GGYRCC	2 cut(s)	202, 232
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	754
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	489, 617
BfaI	CTAG	3 cut(s)	408, 684, 747
BfmI	CTRYAG	2 cut(s)	288, 629
BisI	GCNGC	2 cut(s)	75, 288
BlsI	GCNGC	2 cut(s)	76, 289
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	3 cut(s)	204, 234, 780
BmrFI	CCNGG	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuEI	CTTGAG	2 cut(s)	423, 686
BsaJI	CCNNGG	3 cut(s)	206, 306, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	86, 87
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	206, 306, 543
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	120, 315, 386, 500
BseNI	ACTGG	2 cut(s)	86, 87
BseRI	GAGGAG	1 cut(s)	620
BseSI	GKGCMC	2 cut(s)	94, 754
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	26
BshNI	GGYRCC	2 cut(s)	202, 232
BsiEI	CGRYCG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	489, 617
Bsp1286I	GDGCHC	2 cut(s)	94, 754
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	23, 679
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	6 cut(s)	72, 75, 97, 597, 775, 783
BspCNI	CTCAG	4 cut(s)	121, 316, 385, 499
BspLI	GGNNCC	3 cut(s)	204, 234, 780
BspMAI	CTGCAG	2 cut(s)	292, 633
BspPI	GGATC	1 cut(s)	674
BspT107I	GGYRCC	2 cut(s)	202, 232
BsrDI	GCAATG	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	86, 87
BssECI	CCNNGG	3 cut(s)	206, 306, 543
BssMI	GATC	2 cut(s)	23, 679
BssT1I	CCWWGG	2 cut(s)	306, 543
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	399, 754
BstDEI	CTNAG	4 cut(s)	129, 324, 372, 486
BstDSI	CCRYGG	1 cut(s)	543
BstKTI	GATC	2 cut(s)	26, 682
BstMAI	GTCTC	2 cut(s)	489, 617
BstMBI	GATC	2 cut(s)	23, 679
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	288, 629
BstSLI	GKGCMC	2 cut(s)	94, 754
BstV1I	GCAGC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	543
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	4 cut(s)	79, 94, 399, 626
Cac8I	GCNNGC	2 cut(s)	399, 754
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	104, 134, 280
CviAII	CATG	2 cut(s)	544, 733
CviJI	RGCY	8 cut(s)	5, 30, 299, 443, 499, 569, 700, 798
CviKI_1	RGCY	8 cut(s)	5, 30, 299, 443, 499, 569, 700, 798
CviQI	GTAC	3 cut(s)	104, 134, 280
DdeI	CTNAG	4 cut(s)	129, 324, 372, 486
DpnI	GATC	2 cut(s)	25, 681
DpnII	GATC	2 cut(s)	23, 679
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	306, 543
Eco47I	GGWCC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	306, 543
ErhI	CCWWGG	2 cut(s)	306, 543
FaeI	CATG	2 cut(s)	547, 736
FaiI	YATR	6 cut(s)	267, 518, 545, 552, 662, 734
FatI	CATG	2 cut(s)	543, 732
FauI	CCCGC	3 cut(s)	604, 768, 790
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	75, 288
Fsp4HI	GCNGC	2 cut(s)	75, 288
FspBI	CTAG	3 cut(s)	408, 684, 747
GluI	GCNGC	2 cut(s)	75, 288
GsaI	CCCAGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	547, 736
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	7 cut(s)	18, 49, 62, 141, 320, 328, 344
Hpy166II	GTNNAC	3 cut(s)	348, 378, 540
Hpy188I	TCNGA	6 cut(s)	23, 61, 130, 325, 454, 489
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	3 cut(s)	348, 378, 540
HpyAV	CCTTC	9 cut(s)	41, 208, 217, 307, 409, 602, 613, 649, 715
HpyCH4IV	ACGT	2 cut(s)	178, 365
HpyCH4V	TGCA	3 cut(s)	161, 290, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	4 cut(s)	129, 324, 372, 486
HpySE526I	ACGT	2 cut(s)	178, 365
Hsp92II	CATG	2 cut(s)	547, 736
Kzo9I	GATC	2 cut(s)	23, 679
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	3 cut(s)	408, 684, 747
MaeII	ACGT	2 cut(s)	178, 365
MaeIII	GTNAC	3 cut(s)	40, 457, 574
MalI	GATC	2 cut(s)	25, 681
MboI	GATC	2 cut(s)	23, 679
MboII	GAAGA	4 cut(s)	223, 364, 475, 685
MhlI	GDGCHC	2 cut(s)	94, 754
MluCI	AATT	6 cut(s)	124, 190, 429, 446, 614, 639
MlyI	GAGTC	2 cut(s)	329, 353
MnlI	CCTC	7 cut(s)	45, 124, 246, 280, 489, 598, 759
MseI	TTAA	3 cut(s)	228, 638, 741
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	97, 599
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	23, 679
NlaIII	CATG	2 cut(s)	547, 736
NlaIV	GGNNCC	3 cut(s)	204, 234, 780
NspI	RCATGY	1 cut(s)	736
PciI	ACATGT	1 cut(s)	732
PfeI	GAWTC	5 cut(s)	18, 49, 62, 141, 328
PkrI	GCNGC	2 cut(s)	76, 289
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	2 cut(s)	328, 352
PpsI	GAGTC	2 cut(s)	328, 352
PscI	ACATGT	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	204, 234, 780
PspPI	GGNCC	1 cut(s)	84
PstI	CTGCAG	2 cut(s)	292, 633
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	105, 135, 281
RsaNI	GTAC	3 cut(s)	104, 134, 280
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	228, 638, 741
SatI	GCNGC	2 cut(s)	75, 288
Sau3AI	GATC	2 cut(s)	23, 679
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	2 cut(s)	329, 353
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	94, 754
SfcI	CTRYAG	2 cut(s)	288, 629
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	438, 665
SmoI	CTYRAG	2 cut(s)	438, 665
Sse9I	AATT	6 cut(s)	124, 190, 429, 446, 614, 639
SsiI	CCGC	6 cut(s)	72, 75, 97, 597, 775, 783
SspMI	CTAG	3 cut(s)	408, 684, 747
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	306, 543
TaiI	ACGT	2 cut(s)	181, 368
TaqI	TCGA	2 cut(s)	16, 26
TasI	AATT	6 cut(s)	124, 190, 429, 446, 614, 639
TatI	WGTACW	2 cut(s)	103, 279
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	5 cut(s)	18, 49, 62, 141, 328
Tru1I	TTAA	3 cut(s)	228, 638, 741
Tru9I	TTAA	3 cut(s)	228, 638, 741
TscAI	CASTG	4 cut(s)	86, 94, 399, 633
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	4 cut(s)	86, 94, 399, 633
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	3 cut(s)	190, 429, 446
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	3 cut(s)	408, 684, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.