Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Forward (+)

1424243 .. 1428836

Gene Structure 4594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCATTTGCTAATCGAATCCGATCGAGCCTCCCTCTCGTCTCCAAGATTCTCAAATCGGATTCTCTCTCCGCCGCCGCCCACCGTGCTCTTCTTTGCCCTACCTTCGCCGATTCCGAGTTTGCGAGGAGTTTTGCCACCGCAACCGAGAAGAAGGATGTGAAGGTCAAGGTGCCTTTGGCTTTGTTTGGGGGCTCCGGGAACTATGCCTCTGCTTTGTACATTGCTTCTGTGAAAACTAATTCGTTGGACAAGGTTGAGTCTGAGGTTCTCGACTTTGTTGCGGCAATGACGAAAAGTCCTATGTTTTCTCAGTTCACAAAGGATTTGGCAGTGCCTGCAGATACTAGAAAGAAGGCAATTGAAGATATTGCTACCCAAGCTAAATTTTCAGAAATTACAAAGAACTTCTTGATCCTCTTGGCTGAGAATGGAAGGTTAAGGAACATCGATACCATATCGAAGAGATTTGTTGAACTGACCATGGCGCATAAGGGAATAGTGAAAGTTATTGTGACATCTGTCATTCCCCTCCCTGCCGAAGAGGAGAAAGAATTGAAGGAGACACTGCAGGAGTTGATTGGAAAAGGGAAGACGGTCAAGCTTGAACAGAAGATTGATACCAGTATTATGGGTGGGCTTGTGGTAGAGTTTCAGCAGAAGGTGTTTGACATGTCCATTAAGACGAGGGCACGCCAGTTTGAGAGGTACTTGCGGGATCCTGTTCACTGGGACAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

248

Amino Acids

27.47

Weight (kDa)

9.37

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	67 - 237	5.8e-43	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	6 cut(s)	72, 75, 78, 141, 284, 715
AclWI	GGATC	3 cut(s)	409, 713, 726
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	221, 710
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	365, 476, 559, 608
AhdI	GACNNNNNGTC	1 cut(s)	297
AluBI	AGCT	2 cut(s)	383, 604
AluI	AGCT	2 cut(s)	383, 604
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	46, 557
AlwI	GGATC	3 cut(s)	409, 713, 726
AlwNI	CAGNNNCTG	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	46, 557
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	339, 569
BisI	GCNGC	3 cut(s)	75, 78, 285
BlsI	GCNGC	3 cut(s)	76, 79, 286
Bme1390I	CCNGG	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	174, 196, 720
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	739
BmuI	ACTGGG	1 cut(s)	739
BoxI	GACNNNNGTC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	599
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuMI	CCSGG	1 cut(s)	199
Bsa29I	ATCGAT	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	483
Bse1I	ACTGG	3 cut(s)	624, 697, 734
Bse3DI	GCAATG	2 cut(s)	222, 294
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	2 cut(s)	222, 294
BseMII	CTCAG	3 cut(s)	255, 326, 417
BseNI	ACTGG	3 cut(s)	624, 697, 734
BseRI	GAGGAG	2 cut(s)	142, 560
BseSI	GKGCMC	1 cut(s)	694
Bsh1285I	CGRYCG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	46, 557
BsmBI	CGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	3 cut(s)	91, 197, 694
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	23, 414, 718
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	6 cut(s)	72, 75, 78, 141, 284, 715
BspCNI	CTCAG	3 cut(s)	256, 325, 418
BspDI	ATCGAT	1 cut(s)	450
BspLI	GGNNCC	3 cut(s)	174, 196, 720
BspMAI	CTGCAG	2 cut(s)	343, 573
BspPI	GGATC	3 cut(s)	409, 713, 726
BspQI	GCTCTTC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	222, 294
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	3 cut(s)	624, 697, 734
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	23, 414, 718
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	86, 598
Bst6I	CTCTTC	3 cut(s)	96, 458, 537
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	339, 694
BstDEI	CTNAG	3 cut(s)	264, 312, 426
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	26, 417, 721
BstMAI	GTCTC	2 cut(s)	46, 557
BstMBI	GATC	3 cut(s)	23, 414, 718
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 338, 380
BstNSI	RCATGY	1 cut(s)	676
BstPAI	GACNNNNGTC	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	2 cut(s)	339, 569
BstSLI	GKGCMC	1 cut(s)	694
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	450
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	339, 566
BtsIMutI	CAGTG	3 cut(s)	339, 566, 727
Cac8I	GCNNGC	2 cut(s)	339, 694
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	220, 709
CviAII	CATG	2 cut(s)	484, 673
CviJI	RGCY	7 cut(s)	30, 182, 195, 383, 425, 604, 640
CviKI_1	RGCY	7 cut(s)	30, 182, 195, 383, 425, 604, 640
CviQI	GTAC	2 cut(s)	220, 709
DdeI	CTNAG	3 cut(s)	264, 312, 426
DpnI	GATC	3 cut(s)	25, 416, 720
DpnII	GATC	3 cut(s)	23, 414, 718
DriI	GACNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	3 cut(s)	96, 458, 537
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	3 cut(s)	96, 458, 537
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	487, 676
FaiI	YATR	7 cut(s)	207, 305, 458, 485, 492, 632, 674
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	2 cut(s)	483, 672
FauI	CCCGC	1 cut(s)	708
Fnu4HI	GCNGC	3 cut(s)	75, 78, 285
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	75, 78, 285
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	75, 78, 285
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	487, 676
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	5 cut(s)	18, 49, 62, 113, 260
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	318, 727
Hpy188I	TCNGA	5 cut(s)	23, 61, 118, 265, 394
Hpy188III	TCNNGA	2 cut(s)	272, 412
Hpy8I	GTNNAC	2 cut(s)	318, 727
HpyAV	CCTTC	7 cut(s)	115, 148, 157, 349, 429, 553, 655
HpyCH4III	ACNGT	2 cut(s)	86, 598
HpyCH4V	TGCA	2 cut(s)	341, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 338, 380
HpyF3I	CTNAG	3 cut(s)	264, 312, 426
Hsp92II	CATG	2 cut(s)	487, 676
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	23, 414, 718
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	211, 351, 549, 557, 637, 710, 715, 735
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	25, 416, 720
MboI	GATC	3 cut(s)	23, 414, 718
MboII	GAAGA	7 cut(s)	83, 163, 377, 475, 554, 604, 625
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	3 cut(s)	91, 197, 694
MluCI	AATT	5 cut(s)	241, 360, 386, 396, 554
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	2 cut(s)	440, 681
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	86, 338, 380
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	23, 414, 718
NlaIII	CATG	2 cut(s)	487, 676
NlaIV	GGNNCC	3 cut(s)	174, 196, 720
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	676
PciI	ACATGT	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	18, 49, 62, 113
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	76, 79, 286
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	672
PshAI	GACNNNNGTC	1 cut(s)	521
PspN4I	GGNNCC	3 cut(s)	174, 196, 720
PstI	CTGCAG	2 cut(s)	343, 573
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	718
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	221, 710
RsaNI	GTAC	2 cut(s)	220, 709
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	440, 681
SatI	GCNGC	3 cut(s)	75, 78, 285
Sau3AI	GATC	3 cut(s)	23, 414, 718
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	3 cut(s)	91, 197, 694
SfcI	CTRYAG	2 cut(s)	339, 569
Sse9I	AATT	5 cut(s)	241, 360, 386, 396, 554
SsiI	CCGC	6 cut(s)	72, 75, 78, 141, 284, 715
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	86, 598
TaqI	TCGA	5 cut(s)	16, 26, 273, 450, 461
TasI	AATT	5 cut(s)	241, 360, 386, 396, 554
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	3 cut(s)	77, 80, 287
TfiI	GAWTC	4 cut(s)	18, 49, 62, 113
Tru1I	TTAA	2 cut(s)	440, 681
Tru9I	TTAA	2 cut(s)	440, 681
TscAI	CASTG	3 cut(s)	339, 573, 734
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspRI	CASTG	3 cut(s)	339, 573, 734
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	676
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.