Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7999802.1

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Reverse (-)

17 .. 469

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7999802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggccttcgctaatcgactccgatctagcctccctctccaagtcctcgttagcaagattctcagatcggaaccactctccgccgccgccacccagcgggctgtagtttgccctagtctgacaaaaaataataacaactccgatgagttgtcgaggaactttaattctattgcctctaagaaggatgagaaggtgaagttgcctttggttttgtttggggggtatggaaaatatgcctctgcattgtacattgctgcagcgaaaactgattgcttggacaaagtcgagtctgagattctcgattttgttcagtctatcaagaaaactcctgagctttctcagtttaccaaggatccgacggtgcctgctcgttctagagtgaaggcgatggcggagatttctgaaaaggttgaacattcagatattacaaagaacttcttgggtatgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

150

Amino Acids

16.52

Weight (kDa)

9.49

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	5 cut(s)	81, 84, 87, 97, 392
AclWI	GGATC	2 cut(s)	347, 360
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AlwI	GGATC	2 cut(s)	347, 360
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	254, 257
AsuHPI	GGTGA	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	241, 269
BccI	CCATC	1 cut(s)	382
BfaI	CTAG	3 cut(s)	27, 114, 375
BfmI	CTRYAG	2 cut(s)	102, 255
BisI	GCNGC	4 cut(s)	84, 87, 255, 258
BlsI	GCNGC	4 cut(s)	85, 88, 256, 259
BmiI	GGNNCC	3 cut(s)	72, 354, 363
Bpu10I	CCTNAGC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	4 cut(s)	76, 282, 321, 353
BseXI	GCAGC	2 cut(s)	241, 269
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	23, 65, 352
BspACI	CCGC	5 cut(s)	81, 84, 87, 97, 392
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	75, 283, 322, 352
BspLI	GGNNCC	3 cut(s)	72, 354, 363
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	347, 360
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	23, 65, 352
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	99, 366
BstDEI	CTNAG	5 cut(s)	62, 177, 291, 330, 339
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	26, 68, 355
BstMBI	GATC	3 cut(s)	23, 65, 352
BstSFI	CTRYAG	2 cut(s)	102, 255
BstV1I	GCAGC	2 cut(s)	241, 269
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	99, 366
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	4 cut(s)	5, 30, 101, 334
CviKI_1	RGCY	4 cut(s)	5, 30, 101, 334
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	5 cut(s)	62, 177, 291, 330, 339
DpnI	GATC	3 cut(s)	25, 67, 354
DpnII	GATC	3 cut(s)	23, 65, 352
EciI	GGCGGA	2 cut(s)	70, 407
Eco130I	CCWWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaiI	YATR	3 cut(s)	225, 234, 446
FalI	AAGNNNNNCTT	1 cut(s)	422
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	84, 87, 255, 258
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	84, 87, 255, 258
FspBI	CTAG	3 cut(s)	27, 114, 375
GluI	GCNGC	4 cut(s)	84, 87, 255, 258
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	18, 58, 287, 295
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	9 cut(s)	23, 65, 70, 120, 142, 292, 357, 403, 421
Hpy188III	TCNNGA	4 cut(s)	299, 319, 329, 375
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	4 cut(s)	16, 175, 184, 376
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	242, 257
HpyF3I	CTNAG	5 cut(s)	62, 177, 291, 330, 339
Kzo9I	GATC	3 cut(s)	23, 65, 352
LpnPI	CCDG	3 cut(s)	107, 342, 378
Lsp1109I	GCAGC	2 cut(s)	241, 269
MaeI	CTAG	3 cut(s)	27, 114, 375
MalI	GATC	3 cut(s)	25, 67, 354
MboI	GATC	3 cut(s)	23, 65, 352
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	12, 296
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	41, 45, 56, 147, 184, 247
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	97
NdeII	GATC	3 cut(s)	23, 65, 352
NlaIV	GGNNCC	3 cut(s)	72, 354, 363
PfeI	GAWTC	2 cut(s)	58, 295
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	85, 88, 256, 259
PleI	GAGTC	2 cut(s)	12, 295
PpsI	GAGTC	2 cut(s)	12, 295
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	72, 354, 363
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	84, 87, 255, 258
Sau3AI	GATC	3 cut(s)	23, 65, 352
SchI	GAGTC	2 cut(s)	12, 296
SetI	ASST	3 cut(s)	195, 336, 411
SfcI	CTRYAG	2 cut(s)	102, 255
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	5 cut(s)	81, 84, 87, 97, 392
SspMI	CTAG	3 cut(s)	27, 114, 375
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	4 cut(s)	16, 152, 285, 300
TasI	AATT	1 cut(s)	163
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	2 cut(s)	86, 89
TfiI	GAWTC	2 cut(s)	58, 295
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	2 cut(s)	254, 257
Tth111I	GACNNNGTC	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	374
XspI	CTAG	3 cut(s)	27, 114, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.