Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Forward (+)

2990242 .. 2993856

Gene Structure 3615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG017700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCATTTGCTAATCGAATCCGATCGAGCCTCCCTCTCCTCTCCAAGATTCTCAAATCCGATTCAATCTCCGCCGCCAATGCCTCCGCCGCCCCCCGCGCTCTACTTTGCCCTACTTTCTCCGATTCCGAGTTTTCGAGGAGCTTTTCCACTGCACCCGGTAAGAAGGATGTGAAGGTCAAGGTGCCTTTGGCTTTGTTTGGGGGCTCTGGGAACTATGCCTCTGCTTTGTACATTGCAGCAGTGAAAACTAATTCCTTGGACAAGGTTGAGTCTGAGATTCTTGACTTTGTTGGGGCAATGACGAAAAGTCCTATGTTTTCTCAGTTCACAAAGGATTTGTCAGTGCCTGCAGATACTAGAAAGAAGGCAATTGAAGATATTTCTGCTCAAGCTAAATTTTCAGAAATTACAAAGAACTTCTTGATCGTCTTGGCTGAGAATGGAAGGCTAAGGAACATTGATACCATAGCGAAGAGATTTGTGGAATTGACCATGGCACATAAGGGAGTAGTGAAAGTTATTGTGACATCTGTCATTCCCCTCCCTGCTGAAGAGGAGAAAGAATTGAAGGAGACACTGCAGGACTTAATTGGAAAAGGGAAGACAGTCAAGCTTGAACAAAAGATCGATACCAGTATTATGGGTGGGCTTGTGGTAGAGTTTCAGCAGAAGGTGTTTGACATGTCCATCAAGACTAGGGCACGCCAGTTTGAGAGGTACTTGCGGGATCCCATTCACTGGGACAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

251

Amino Acids

27.7

Weight (kDa)

9.46

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	71 - 241	1e-42	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccII	CGCG	1 cut(s)	99
AciI	CCGC	6 cut(s)	72, 75, 87, 90, 97, 727
AclWI	GGATC	2 cut(s)	725, 738
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	233, 722
AfiI	CCNNNNNNNGG	1 cut(s)	741
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	66, 377, 571, 620
AhdI	GACNNNNNGTC	1 cut(s)	309
AluBI	AGCT	3 cut(s)	144, 395, 616
AluI	AGCT	3 cut(s)	144, 395, 616
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	725, 738
AlwNI	CAGNNNCTG	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	706
BamHI	GGATCC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	698
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	2 cut(s)	360, 699
BfmI	CTRYAG	2 cut(s)	351, 581
BisI	GCNGC	3 cut(s)	75, 90, 240
BlsI	GCNGC	3 cut(s)	76, 91, 241
Bme1390I	CCNGG	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	186, 732
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	751
BmuI	ACTGGG	1 cut(s)	751
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	258, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse1I	ACTGG	3 cut(s)	636, 709, 746
Bse3DI	GCAATG	2 cut(s)	234, 306
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	258, 495
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMI	GCAATG	2 cut(s)	234, 306
BseMII	CTCAG	3 cut(s)	267, 338, 429
BseNI	ACTGG	3 cut(s)	636, 709, 746
BseRI	GAGGAG	3 cut(s)	29, 154, 572
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmAI	GTCTC	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	209, 706
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	23, 426, 627, 730
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	6 cut(s)	72, 75, 87, 90, 97, 727
BspCNI	CTCAG	3 cut(s)	268, 337, 430
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	186, 732
BspMAI	CTGCAG	2 cut(s)	355, 585
BspPI	GGATC	2 cut(s)	725, 738
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	2 cut(s)	234, 306
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	636, 709, 746
BssECI	CCNNGG	2 cut(s)	258, 495
BssMI	GATC	4 cut(s)	23, 426, 627, 730
BssT1I	CCWWGG	2 cut(s)	258, 495
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	2 cut(s)	470, 549
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	351, 706
BstDEI	CTNAG	4 cut(s)	276, 324, 438, 452
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	4 cut(s)	26, 429, 630, 733
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	4 cut(s)	23, 426, 627, 730
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 98
BstNSI	RCATGY	1 cut(s)	688
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	2 cut(s)	351, 581
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	630
BsuTUI	ATCGAT	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	3 cut(s)	150, 249, 578
BtsIMutI	CAGTG	5 cut(s)	150, 249, 351, 578, 739
Cac8I	GCNNGC	2 cut(s)	351, 706
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	232, 721
CviAII	CATG	2 cut(s)	496, 685
CviJI	RGCY	9 cut(s)	30, 144, 194, 207, 395, 437, 451, 616, 652
CviKI_1	RGCY	9 cut(s)	30, 144, 194, 207, 395, 437, 451, 616, 652
CviQI	GTAC	2 cut(s)	232, 721
DdeI	CTNAG	4 cut(s)	276, 324, 438, 452
DpnI	GATC	4 cut(s)	25, 428, 629, 732
DpnII	GATC	4 cut(s)	23, 426, 627, 730
DriI	GACNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	470, 549
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	2 cut(s)	470, 549
EciI	GGCGGA	2 cut(s)	61, 76
Eco130I	CCWWGG	2 cut(s)	258, 495
Eco24I	GRGCYC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	573
EcoT14I	CCWWGG	2 cut(s)	258, 495
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	2 cut(s)	258, 495
FaeI	CATG	2 cut(s)	499, 688
FaiI	YATR	7 cut(s)	219, 317, 470, 497, 504, 644, 686
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	2 cut(s)	495, 684
FauI	CCCGC	2 cut(s)	104, 720
Fnu4HI	GCNGC	3 cut(s)	75, 90, 240
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	75, 90, 240
FspBI	CTAG	2 cut(s)	360, 699
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	3 cut(s)	75, 90, 240
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	499, 688
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	6 cut(s)	18, 49, 62, 125, 272, 280
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	6 cut(s)	23, 61, 124, 130, 277, 406
Hpy188III	TCNNGA	3 cut(s)	284, 424, 694
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	6 cut(s)	160, 169, 361, 441, 565, 667
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	4 cut(s)	155, 239, 353, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 98
HpyF3I	CTNAG	4 cut(s)	276, 324, 438, 452
Hsp92II	CATG	2 cut(s)	499, 688
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	23, 426, 627, 730
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	8 cut(s)	172, 195, 363, 561, 569, 649, 722, 727
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	2 cut(s)	360, 699
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	4 cut(s)	25, 428, 629, 732
MboI	GATC	4 cut(s)	23, 426, 627, 730
MboII	GAAGA	4 cut(s)	389, 487, 566, 616
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	209, 706
MluCI	AATT	7 cut(s)	253, 372, 398, 408, 488, 566, 591
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	9 cut(s)	41, 45, 50, 94, 132, 232, 550, 554, 711
MseI	TTAA	1 cut(s)	590
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 98
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	23, 426, 627, 730
NlaIII	CATG	2 cut(s)	499, 688
NlaIV	GGNNCC	2 cut(s)	186, 732
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	688
PciI	ACATGT	1 cut(s)	684
PfeI	GAWTC	5 cut(s)	18, 49, 62, 125, 280
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	76, 91, 241
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PscI	ACATGT	1 cut(s)	684
PshAI	GACNNNNGTC	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	186, 732
PstI	CTGCAG	2 cut(s)	355, 585
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	730
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	233, 722
RsaNI	GTAC	2 cut(s)	232, 721
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	3 cut(s)	75, 90, 240
Sau3AI	GATC	4 cut(s)	23, 426, 627, 730
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	209, 706
SetI	ASST	9 cut(s)	146, 180, 186, 270, 397, 618, 678, 722, 753
SfcI	CTRYAG	2 cut(s)	351, 581
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	7 cut(s)	253, 372, 398, 408, 488, 566, 591
SsiI	CCGC	6 cut(s)	72, 75, 87, 90, 97, 727
SspMI	CTAG	2 cut(s)	360, 699
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	258, 495
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	4 cut(s)	16, 26, 137, 630
TasI	AATT	7 cut(s)	253, 372, 398, 408, 488, 566, 591
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	77, 92
TfiI	GAWTC	5 cut(s)	18, 49, 62, 125, 280
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	5 cut(s)	157, 249, 351, 585, 746
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	526
TspRI	CASTG	5 cut(s)	157, 249, 351, 585, 746
Van91I	CCANNNNNTGG	1 cut(s)	741
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	1 cut(s)	688
XspI	CTAG	2 cut(s)	360, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.