Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000154.1

Orthogroup ID

OG0004768

Physical Location & Seq

Genomic Coordinates Forward (+)

121887 .. 126876

Gene Structure 4990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000154.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggcatttgctaatcgaatccgatcgagcctccctctcctctccaagattctcaaatccgattcaatctccgccgccaatgcctccgccgccccccgcgctctactttgccctactttctccgattccgagttttcgaggagcttttccactgctcccggtaagaaggatgtgaaggtcaaggtgcctttggctttgtttgggggctctgggaactatgcctctgctttgtacattgcagcggtgaaaactaattccttggacaaggttgagtctgagattcttgactttgttggggcaatgacgaagagtcctatgttttctcagttcacaaaggattggtcagtgcctgcagatactagaaagaaggcaattgaagatatttctgctcaagctaaattttcagaaattacaaagaacttcttgattgtcttggcggagaatggaaggctaaggaacattgataccatagcgaagagatttgtggaattgaccatggcacataagggagtagtgaaagttattgtgacatctgtcattcccctccctgctgaagaggagaaagaattgaaggagacactgcaggacttaattggaaaagggaagacagtcaagcttgaacagaagatcgataccagtatcatgggtgggcttgtggtagagtttcagcagaaggtgtttgacatgtccatcaagactagggcacgccagtttgagagacctccatatccttgctgcgcagatcacaacccttcttccggcctcctacttttccagctcacttgctgcgcatatcacagccccagccccgcgcgtctccgtgagtcctgcagtagcccatcccagtccagcatcctcgcagcatcagccccgcatcctcgcagcctcagtcttgcgcgcggcataccacctgcggcgtccggctccggcaaacccagaaggaagaagacgcgagaaaaagaaaaaaaaaagagaaaaaaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005886 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0050897 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

OSCP

Protein Analysis

328

Amino Acids

35.83

Weight (kDa)

9.87

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13450 AT5G13450
fragaria_vesca	FvH4_5g10590 FvH4_7g01010
malus_domestica	MD02G1312800.v1.1 MD07G1010400.v1.1
prunus_persica	Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1 Prupe.2G012700_v2.0.a1
pyrus_communis	pycom02g26250 pycom07g00850
rosa_chinensis	RchiOBHm_Chr1g0315911 RchiOBHm_Chr7g0187561
rosa_laevigata	RLG00000004771 RLG00000030724
rosa_multiflora	Rmu_co7999802.1_g000001 Rmu_sc0008640.1_g000001 Rmu_sc0012813.1_g000003 Rmu_ssc0000110.1_g000021 Rmu_ssc0000154.1_g000022
rosa_roxburghii	Rroxscaffold_3G00267320
rosa_rugosa	Rorug06G0482700
rosa_samantha	Rh1AG017700 Rh1BG010600 Rh1CG015100 Rh1DG010700 Rh7AG087500 Rh7BG088800 Rh7CG088000 Rh7DG089700
rosa_wichuraiana	Rw1G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	919
Acc16I	TGCGCA	2 cut(s)	739, 790
Acc36I	ACCTGC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	6 cut(s)	99, 812, 814, 898, 900, 952
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	917
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	758
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	66, 377, 571, 620
AhdI	GACNNNNNGTC	1 cut(s)	309
AluBI	AGCT	4 cut(s)	144, 395, 616, 778
AluI	AGCT	4 cut(s)	144, 395, 616, 778
Alw26I	GTCTC	3 cut(s)	569, 712, 821
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	760
ApeKI	GCWGC	5 cut(s)	239, 735, 786, 860, 882
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	6 cut(s)	101, 740, 791, 814, 898, 900
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	611, 953
BbvI	GCAGC	5 cut(s)	251, 722, 773, 872, 894
BccI	CCATC	2 cut(s)	698, 847
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	569, 712, 821
BfaI	CTAG	2 cut(s)	360, 699
BfmI	CTRYAG	3 cut(s)	351, 581, 829
BfuAI	ACCTGC	1 cut(s)	919
BisI	GCNGC	9 cut(s)	75, 90, 240, 736, 787, 861, 883, 901, 915
BlsI	GCNGC	9 cut(s)	76, 91, 241, 737, 788, 862, 884, 902, 916
Bme1390I	CCNGG	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	186, 925
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	3 cut(s)	861, 872, 883
BmuI	ACTGGG	1 cut(s)	838
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	2 cut(s)	611, 953
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	2 cut(s)	258, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	758
Bse1I	ACTGG	3 cut(s)	636, 709, 844
Bse3DI	GCAATG	2 cut(s)	234, 306
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	258, 495
BseGI	GGATG	4 cut(s)	175, 839, 852, 874
BseLI	CCNNNNNNNGG	1 cut(s)	758
BseMI	GCAATG	2 cut(s)	234, 306
BseMII	CTCAG	3 cut(s)	267, 338, 901
BseNI	ACTGG	3 cut(s)	636, 709, 844
BsePI	GCGCGC	1 cut(s)	896
BseRI	GAGGAG	3 cut(s)	29, 154, 572
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	5 cut(s)	251, 722, 773, 872, 894
BseYI	CCCAGC	1 cut(s)	803
Bsh1236I	CGCG	6 cut(s)	99, 812, 814, 898, 900, 952
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	762
BshNI	GGYRCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	4 cut(s)	159, 759, 921, 927
BslI	CCNNNNNNNGG	1 cut(s)	758
BsmAI	GTCTC	3 cut(s)	569, 712, 821
BsmBI	CGTCTC	1 cut(s)	821
BsnI	GGCC	1 cut(s)	762
Bso31I	GGTCTC	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	209, 706
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	23, 627, 742
Bsp19I	CCATGG	1 cut(s)	495
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	3 cut(s)	268, 337, 900
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	6 cut(s)	99, 812, 814, 898, 900, 952
BspLI	GGNNCC	2 cut(s)	186, 925
BspMAI	CTGCAG	3 cut(s)	355, 585, 833
BspMI	ACCTGC	1 cut(s)	919
BspT107I	GGYRCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	712
BsrDI	GCAATG	2 cut(s)	234, 306
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	636, 709, 844
BssECI	CCNNGG	2 cut(s)	258, 495
BssHII	GCGCGC	1 cut(s)	896
BssMI	GATC	3 cut(s)	23, 627, 742
BssNI	GRCGYC	1 cut(s)	917
BssT1I	CCWWGG	2 cut(s)	258, 495
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	3 cut(s)	302, 470, 549
BstACI	GRCGYC	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	351, 706, 898
BstDEI	CTNAG	4 cut(s)	276, 324, 452, 887
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	4 cut(s)	175, 839, 852, 874
BstFNI	CGCG	6 cut(s)	99, 812, 814, 898, 900, 952
BstHHI	GCGC	6 cut(s)	101, 740, 791, 814, 898, 900
BstKTI	GATC	3 cut(s)	26, 630, 745
BstMAI	GTCTC	3 cut(s)	569, 712, 821
BstMBI	GATC	3 cut(s)	23, 627, 742
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 89, 98, 866
BstNSI	RCATGY	1 cut(s)	688
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	3 cut(s)	351, 581, 829
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	6 cut(s)	99, 812, 814, 898, 900, 952
BstV1I	GCAGC	5 cut(s)	251, 722, 773, 872, 894
BstV2I	GAAGAC	2 cut(s)	611, 953
BstXI	CCANNNNNNTGG	1 cut(s)	643
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	762
BsuTUI	ATCGAT	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	4 cut(s)	175, 839, 852, 874
BtsI	GCAGTG	2 cut(s)	150, 578
BtsIMutI	CAGTG	3 cut(s)	150, 351, 578
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	3 cut(s)	351, 706, 898
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	6 cut(s)	101, 740, 791, 814, 898, 900
ClaI	ATCGAT	1 cut(s)	630
CseI	GACGC	3 cut(s)	803, 906, 958
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	496, 643, 685
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	4 cut(s)	276, 324, 452, 887
DpnI	GATC	3 cut(s)	25, 629, 744
DpnII	GATC	3 cut(s)	23, 627, 742
DriI	GACNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	302, 470, 549
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	3 cut(s)	302, 470, 549
EciI	GGCGGA	3 cut(s)	61, 76, 452
Eco130I	CCWWGG	2 cut(s)	258, 495
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	573
EcoT14I	CCWWGG	2 cut(s)	258, 495
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	2 cut(s)	258, 495
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	3 cut(s)	499, 646, 688
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	3 cut(s)	495, 642, 684
FauI	CCCGC	3 cut(s)	104, 817, 879
Fnu4HI	GCNGC	9 cut(s)	75, 90, 240, 736, 787, 861, 883, 901, 915
FokI	GGATG	4 cut(s)	182, 826, 839, 861
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	9 cut(s)	75, 90, 240, 736, 787, 861, 883, 901, 915
FspBI	CTAG	2 cut(s)	360, 699
FspI	TGCGCA	2 cut(s)	739, 790
GlaI	GCGC	6 cut(s)	100, 739, 790, 813, 897, 899
GluI	GCNGC	9 cut(s)	75, 90, 240, 736, 787, 861, 883, 901, 915
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	4 cut(s)	159, 759, 921, 927
HgaI	GACGC	3 cut(s)	803, 906, 958
HhaI	GCGC	6 cut(s)	101, 740, 791, 814, 898, 900
Hin1I	GRCGYC	1 cut(s)	917
Hin1II	CATG	3 cut(s)	499, 646, 688
Hin6I	GCGC	6 cut(s)	99, 738, 789, 812, 896, 898
HinP1I	GCGC	6 cut(s)	99, 738, 789, 812, 896, 898
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	8 cut(s)	18, 49, 62, 125, 272, 280, 310, 824
HpaII	CCGG	4 cut(s)	159, 759, 921, 927
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	6 cut(s)	23, 61, 124, 130, 277, 406
Hpy188III	TCNNGA	3 cut(s)	284, 424, 694
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	8 cut(s)	160, 169, 361, 441, 565, 667, 762, 933
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	4 cut(s)	239, 353, 583, 831
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 89, 98, 866
HpyF3I	CTNAG	4 cut(s)	276, 324, 452, 887
Hsp92I	GRCGYC	1 cut(s)	917
Hsp92II	CATG	3 cut(s)	499, 646, 688
HspAI	GCGC	6 cut(s)	99, 738, 789, 812, 896, 898
Kzo9I	GATC	3 cut(s)	23, 627, 742
LmnI	GCTCC	3 cut(s)	141, 160, 929
Lsp1109I	GCAGC	5 cut(s)	251, 722, 773, 872, 894
LweI	GCATC	3 cut(s)	861, 872, 883
MaeI	CTAG	2 cut(s)	360, 699
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	25, 629, 744
MboI	GATC	3 cut(s)	23, 627, 742
MboII	GAAGA	9 cut(s)	319, 389, 487, 566, 616, 637, 747, 955, 958
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	209, 706
MluCI	AATT	7 cut(s)	253, 372, 398, 408, 488, 566, 591
MlyI	GAGTC	3 cut(s)	281, 319, 833
MseI	TTAA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	4 cut(s)	159, 759, 921, 927
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	372
MvnI	CGCG	6 cut(s)	99, 812, 814, 898, 900, 952
MwoI	GCNNNNNNNGC	4 cut(s)	80, 89, 98, 866
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	3 cut(s)	23, 627, 742
NlaIII	CATG	3 cut(s)	499, 646, 688
NlaIV	GGNNCC	2 cut(s)	186, 925
NmuCI	GTSAC	1 cut(s)	526
NsbI	TGCGCA	2 cut(s)	739, 790
NspI	RCATGY	1 cut(s)	688
PaqCI	CACCTGC	1 cut(s)	919
PauI	GCGCGC	1 cut(s)	896
PciI	ACATGT	1 cut(s)	684
PfeI	GAWTC	5 cut(s)	18, 49, 62, 125, 280
PkrI	GCNGC	9 cut(s)	76, 91, 241, 737, 788, 862, 884, 902, 916
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	3 cut(s)	280, 318, 832
PpsI	GAGTC	3 cut(s)	280, 318, 832
PscI	ACATGT	1 cut(s)	684
PshAI	GACNNNNGTC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	803
PspN4I	GGNNCC	2 cut(s)	186, 925
PstI	CTGCAG	3 cut(s)	355, 585, 833
PstNI	CAGNNNCTG	1 cut(s)	350
PteI	GCGCGC	1 cut(s)	896
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	9 cut(s)	75, 90, 240, 736, 787, 861, 883, 901, 915
Sau3AI	GATC	3 cut(s)	23, 627, 742
SchI	GAGTC	3 cut(s)	281, 319, 833
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	209, 706
SfaNI	GCATC	3 cut(s)	861, 872, 883
SfcI	CTRYAG	3 cut(s)	351, 581, 829
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	7 cut(s)	253, 372, 398, 408, 488, 566, 591
SspMI	CTAG	2 cut(s)	360, 699
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	258, 495
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	4 cut(s)	16, 26, 137, 630
TasI	AATT	7 cut(s)	253, 372, 398, 408, 488, 566, 591
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	4 cut(s)	77, 92, 903, 917
TfiI	GAWTC	5 cut(s)	18, 49, 62, 125, 280
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	3 cut(s)	157, 351, 585
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	5 cut(s)	239, 735, 786, 860, 882
Tsp45I	GTSAC	1 cut(s)	526
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	3 cut(s)	157, 351, 585
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	1 cut(s)	688
XspI	CTAG	2 cut(s)	360, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.