AT5G13710
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4423555 .. 4427324
3770 bp
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UTR
Exon/CDS
Intron
AT5G13710.2

Sequence Viewer

Length: 1011 bp
ATGGATCTCGCGTCGAATCTTGGTGGGAAGATCGATAAATCCGATGTTCTCACCGCCGTCGAAAAGTATGAGCAATATCATGTCTTCCATGGAGGAAACGAGGAAGAGAGAAAAGCCAATTATACTGACATGGTTAATAAGTACTATGACCTTGCTACTAGCTTTTATGAGTACGGATGGGGAGAATCCTTCCATTTTGCACAAAGATGGAAAGGAGAATCGCTTCGAGAGAGTATTAAGCGACACGAGCACTTTCTTGCTCTTCAGCTTGGCATCCAACCAGGACAAAAGGTACTGGATGTAGGATGTGGAATTGGTGGACCGTTGAGGGAAATTGCAAGATTCAGCAATTCAGTTGTTACCGGGCTCAACAATAACGAATACCAGATCACCAGAGGCAAGGAACTAAACCGACTTGCAGGTGTCGACAAGACATGTAACTTTGTCAAGGCTGACTTCATGAAGATGCCATTCCCGGAAAACAGTTTCGATGCAGTTTATGCAATAGAAGCAACTTGCCATGCACCTGATGCGTATGGATGCTACAAAGAGATCTACAGAGTGCTAAAGCCTGGGCAATGTTTTGCTGCCTATGAGTGGTGTATGACTGATGCATTTGACCCTGATAACGCCGAACATCAGAAAATAAAGGGAGAGATAGAGATTGGAGATGGTCTTCCTGACATTAGGCTGACTACAAAATGCCTCGAAGCTCTGAAGCAGGCCGGTTTTGAAGTGATATGGGAAAAGGATCTGGCCAAGGACTCGCCGGTCCCATGGTACTTACCTCTTGACAAAAATCATTTCTCACTCAGTAGCTTCCGCCTTACAGCTGTTGGACGATTCATAACCAAAAACATGGTCAAGATCCTTGAATACATAAGACTTGCACCTCAAGGAAGCCAAAGGGTCTCAAATTTCCTGGAGCAGGCTGCGGAAGGATTAGTCGACGGTGGAAGGAGAGAGATTTTCACGCCAATGTATTTCTTCTTGGCCCGGAAGCCAGAGTAA

Protein Analysis

336

Amino Acids

38.27

Weight (kDa)

5.85

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 39 - 248 5.6e-10 Mycolic acid cyclopropane synthetase
Ubie_methyltran PF01209 85 - 200 1.8e-09 ubiE/COQ5 methyltransferase family
Methyltransf_23 PF13489 89 - 193 3.8e-07 Methyltransferase domain
Methyltransf_31 PF13847 93 - 209 1.1e-16 Methyltransferase domain
Methyltransf_25 PF13649 98 - 192 1.3e-18 Methyltransferase domain
Methyltransf_11 PF08241 99 - 194 1.3e-21 Methyltransferase domain
Methyltransf_12 PF08242 99 - 192 4.7e-09 Methyltransferase domain
Sterol_MT_C PF08498 272 - 336 8e-29 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
AasI GACNNNNNNGTC 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 410
AccI GTMKAC 2 cut(s) 426, 948
AccII CGCG 1 cut(s) 11
AciI CCGC 3 cut(s) 54, 823, 935
AclWI GGATC 3 cut(s) 12, 759, 862
AcoI YGGCCR 1 cut(s) 756
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 2 cut(s) 248, 737
AfaI GTAC 4 cut(s) 143, 173, 294, 782
AfiI CCNNNNNNNGG 2 cut(s) 597, 928
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 2 cut(s) 734, 875
AjnI CCWGG 3 cut(s) 280, 571, 921
AluBI AGCT 5 cut(s) 162, 268, 713, 819, 833
AluI AGCT 5 cut(s) 162, 268, 713, 819, 833
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 916
AlwI GGATC 3 cut(s) 12, 759, 862
AoxI GGCC 3 cut(s) 723, 756, 993
ApeKI GCWGC 2 cut(s) 587, 932
ApoI RAATTY 1 cut(s) 916
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 3 cut(s) 320, 772, 994
AsuC2I CCSGG 3 cut(s) 364, 476, 997
AsuHPI GGTGA 2 cut(s) 43, 382
AvaII GGWCC 2 cut(s) 320, 772
BalI TGGCCA 1 cut(s) 758
BanII GRGCYC 1 cut(s) 369
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 76, 668
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 574, 919
BccI CCATC 3 cut(s) 171, 201, 665
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 3 cut(s) 282, 573, 923
BcnI CCSGG 3 cut(s) 364, 476, 997
BcoDI GTCTC 1 cut(s) 916
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 410
BglII AGATCT 1 cut(s) 552
BisI GCNGC 2 cut(s) 588, 933
BlsI GCNGC 2 cut(s) 589, 934
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 6 cut(s) 282, 364, 476, 573, 923, 997
Bme18I GGWCC 2 cut(s) 320, 772
BmgT120I GGNCC 3 cut(s) 320, 772, 994
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 6 cut(s) 282, 364, 476, 573, 923, 997
BmsI GCATC 6 cut(s) 282, 456, 481, 520, 530, 601
BpiI GAAGAC 2 cut(s) 76, 668
BpmI CTGGAG 1 cut(s) 944
BpuEI CTTGAG 1 cut(s) 879
BpuMI CCSGG 3 cut(s) 364, 476, 997
Bsa29I ATCGAT 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 4 cut(s) 88, 572, 759, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 597, 928
Bse118I RCCGGY 2 cut(s) 725, 769
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 584
BseBI CCWGG 3 cut(s) 282, 573, 923
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 4 cut(s) 88, 572, 759, 776
BseGI GGATG 5 cut(s) 182, 273, 304, 311, 545
BseLI CCNNNNNNNGG 2 cut(s) 597, 928
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 1 cut(s) 826
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 574, 919
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 3 cut(s) 725, 758, 995
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 5 cut(s) 363, 476, 726, 770, 997
BslFI GGGAC 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 597, 928
BsmAI GTCTC 1 cut(s) 916
BsmFI GGGAC 1 cut(s) 758
BsnI GGCC 3 cut(s) 725, 758, 995
Bso31I GGTCTC 1 cut(s) 916
Bsp1286I GDGCHC 2 cut(s) 252, 369
Bsp143I GATC 6 cut(s) 4, 30, 387, 552, 751, 867
Bsp19I CCATGG 2 cut(s) 88, 776
BspACI CCGC 3 cut(s) 54, 823, 935
BspANI GGCC 3 cut(s) 725, 758, 995
BspCNI CTCAG 1 cut(s) 825
BspDI ATCGAT 1 cut(s) 33
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 3 cut(s) 12, 759, 862
BspQI GCTCTTC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 2 cut(s) 725, 769
BsrI ACTGG 1 cut(s) 300
BssAI RCCGGY 2 cut(s) 725, 769
BssECI CCNNGG 4 cut(s) 88, 572, 759, 776
BssMI GATC 6 cut(s) 4, 30, 387, 552, 751, 867
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 3 cut(s) 88, 759, 776
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 3 cut(s) 282, 573, 923
Bst4CI ACNGT 3 cut(s) 324, 485, 953
Bst6I CTCTTC 2 cut(s) 99, 267
BstAPI GCANNNNNTGC 2 cut(s) 500, 530
BstC8I GCNNGC 2 cut(s) 723, 930
BstDEI CTNAG 1 cut(s) 812
BstDSI CCRYGG 2 cut(s) 88, 776
BstENI CCTNNNNNAGG 1 cut(s) 926
BstF5I GGATG 5 cut(s) 182, 273, 304, 311, 545
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 6 cut(s) 7, 33, 390, 555, 754, 870
BstMAI GTCTC 1 cut(s) 916
BstMBI GATC 6 cut(s) 4, 30, 387, 552, 751, 867
BstMWI GCNNNNNNNGC 4 cut(s) 247, 500, 509, 530
BstNI CCWGG 3 cut(s) 282, 573, 923
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 6 cut(s) 280, 362, 474, 571, 921, 995
BstSFI CTRYAG 1 cut(s) 556
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 574, 919
BstV2I GAAGAC 2 cut(s) 76, 668
BstX2I RGATCY 4 cut(s) 4, 552, 751, 867
BstXI CCANNNNNNTGG 1 cut(s) 859
BstYI RGATCY 4 cut(s) 4, 552, 751, 867
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 3 cut(s) 725, 758, 995
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 2 cut(s) 88, 776
BtsCI GGATG 5 cut(s) 182, 273, 304, 311, 545
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 723, 930
CciI TCATGA 1 cut(s) 459
Cfr10I RCCGGY 2 cut(s) 725, 769
Cfr13I GGNCC 3 cut(s) 320, 772, 994
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 4 cut(s) 142, 172, 293, 781
CviAII CATG 8 cut(s) 80, 89, 130, 435, 460, 521, 777, 859
CviQI GTAC 4 cut(s) 142, 172, 293, 781
DdeI CTNAG 1 cut(s) 812
DpnI GATC 6 cut(s) 6, 32, 389, 554, 753, 869
DpnII GATC 6 cut(s) 4, 30, 387, 552, 751, 867
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 1 cut(s) 756
Eam1104I CTCTTC 2 cut(s) 99, 267
EarI CTCTTC 2 cut(s) 99, 267
EciI GGCGGA 1 cut(s) 812
Eco130I CCWWGG 3 cut(s) 88, 759, 776
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 916
Eco47I GGWCC 2 cut(s) 320, 772
Eco57I CTGAAG 2 cut(s) 248, 737
EcoNI CCTNNNNNAGG 1 cut(s) 926
EcoRII CCWGG 3 cut(s) 280, 571, 921
EcoT14I CCWWGG 3 cut(s) 88, 759, 776
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 3 cut(s) 88, 759, 776
FaeI CATG 8 cut(s) 83, 92, 133, 438, 463, 524, 780, 862
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 758
FatI CATG 8 cut(s) 79, 88, 129, 434, 459, 520, 776, 858
FblI GTMKAC 2 cut(s) 426, 948
Fnu4HI GCNGC 2 cut(s) 588, 933
FokI GGATG 5 cut(s) 189, 260, 311, 318, 552
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 588, 933
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 588, 933
GsuI CTGGAG 1 cut(s) 944
HaeIII GGCC 3 cut(s) 725, 758, 995
HapII CCGG 5 cut(s) 363, 476, 726, 770, 997
Hin1II CATG 8 cut(s) 83, 92, 133, 438, 463, 524, 780, 862
HincII GTYRAC 2 cut(s) 427, 949
HindII GTYRAC 2 cut(s) 427, 949
HinfI GANTC 6 cut(s) 16, 185, 218, 342, 764, 843
HpaII CCGG 5 cut(s) 363, 476, 726, 770, 997
HphI GGTGA 2 cut(s) 43, 382
Hpy166II GTNNAC 3 cut(s) 320, 427, 949
Hpy188I TCNGA 3 cut(s) 43, 642, 717
Hpy188III TCNNGA 5 cut(s) 227, 460, 680, 791, 865
Hpy8I GTNNAC 3 cut(s) 320, 427, 949
Hpy99I CGWCG 3 cut(s) 16, 62, 953
HpyAV CCTTC 3 cut(s) 199, 932, 951
HpyCH4III ACNGT 3 cut(s) 324, 485, 953
HpyCH4V TGCA 8 cut(s) 200, 338, 419, 494, 503, 524, 614, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 500, 509, 530
HpyF3I CTNAG 1 cut(s) 812
Hsp92II CATG 8 cut(s) 83, 92, 133, 438, 463, 524, 780, 862
Kzo9I GATC 6 cut(s) 4, 30, 387, 552, 751, 867
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 925
Lsp1109I GCAGC 2 cut(s) 574, 919
LweI GCATC 6 cut(s) 282, 456, 481, 520, 530, 601
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 358, 437
MalI GATC 6 cut(s) 6, 32, 389, 554, 753, 869
MboI GATC 6 cut(s) 4, 30, 387, 552, 751, 867
MboII GAAGA 7 cut(s) 40, 76, 116, 254, 475, 668, 979
MflI RGATCY 4 cut(s) 4, 552, 751, 867
MhlI GDGCHC 2 cut(s) 252, 369
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 5 cut(s) 118, 312, 333, 349, 916
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 2 cut(s) 301, 817
MnlI CCTC 7 cut(s) 86, 94, 321, 389, 716, 798, 903
Mox20I TGGCCA 1 cut(s) 758
Mph1103I ATGCAT 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 758
MseI TTAA 2 cut(s) 135, 237
MslI CAYNNNNRTG 3 cut(s) 205, 464, 977
Msp20I TGGCCA 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 5 cut(s) 363, 476, 726, 770, 997
MspR9I CCNGG 6 cut(s) 282, 364, 476, 573, 923, 997
MvaI CCWGG 3 cut(s) 282, 573, 923
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 247, 500, 509, 530
NciI CCSGG 3 cut(s) 364, 476, 997
NcoI CCATGG 2 cut(s) 88, 776
NdeII GATC 6 cut(s) 4, 30, 387, 552, 751, 867
NlaIII CATG 8 cut(s) 83, 92, 133, 438, 463, 524, 780, 862
NlaIV GGNNCC 1 cut(s) 774
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 1 cut(s) 438
PagI TCATGA 1 cut(s) 459
PaqCI CACCTGC 1 cut(s) 410
PciI ACATGT 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 5 cut(s) 16, 185, 218, 342, 843
PfoI TCCNGGA 2 cut(s) 474, 921
PkrI GCNGC 2 cut(s) 589, 934
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
PscI ACATGT 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 280, 571, 921
PspGI CCWGG 3 cut(s) 280, 571, 921
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 3 cut(s) 320, 772, 994
PsuI RGATCY 4 cut(s) 4, 552, 751, 867
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 4 cut(s) 143, 173, 294, 782
RsaNI GTAC 4 cut(s) 142, 172, 293, 781
RseI CAYNNNNRTG 3 cut(s) 205, 464, 977
SalI GTCGAC 2 cut(s) 425, 947
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 135, 237
SatI GCNGC 2 cut(s) 588, 933
Sau3AI GATC 6 cut(s) 4, 30, 387, 552, 751, 867
Sau96I GGNCC 3 cut(s) 320, 772, 994
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 6 cut(s) 282, 364, 476, 573, 923, 997
SduI GDGCHC 2 cut(s) 252, 369
SfaNI GCATC 6 cut(s) 282, 456, 481, 520, 530, 601
SfcI CTRYAG 1 cut(s) 556
SinI GGWCC 2 cut(s) 320, 772
SmiMI CAYNNNNRTG 3 cut(s) 205, 464, 977
SmlI CTYRAG 1 cut(s) 894
SmoI CTYRAG 1 cut(s) 894
Sse9I AATT 5 cut(s) 118, 312, 333, 349, 916
SsiI CCGC 3 cut(s) 54, 823, 935
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 6 cut(s) 280, 362, 474, 571, 921, 995
StyI CCWWGG 3 cut(s) 88, 759, 776
TaaI ACNGT 3 cut(s) 324, 485, 953
TaqI TCGA 8 cut(s) 14, 33, 60, 226, 426, 489, 708, 948
TasI AATT 5 cut(s) 118, 312, 333, 349, 916
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 5 cut(s) 16, 185, 218, 342, 843
Tru1I TTAA 2 cut(s) 135, 237
Tru9I TTAA 2 cut(s) 135, 237
TseI GCWGC 2 cut(s) 587, 932
TspDTI ATGAA 3 cut(s) 448, 476, 835
TspGWI ACGGA 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 320, 772
XagI CCTNNNNNAGG 1 cut(s) 926
XapI RAATTY 1 cut(s) 916
XceI RCATGY 1 cut(s) 438
XmiI GTMKAC 2 cut(s) 426, 948
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.