Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003004

Physical Location & Seq

Genomic Coordinates Forward (+)

1879350 .. 1884795

Gene Structure 5446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G019200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCGAAAGCTGGAGCATTGGATCTCGCATCGGGTGTTGGTGGAAAGATTGACAAGACCGAAGTTCTCTCTGCTGTTGAAAAGTATGAGAAGTATCATGTCTGTTATGGAGGCGAAGAGGAAGCAAGAAAATCTAACTATACTGACATGGTTAATAAATATTATGATCTTGTTACCAGCTTTTATGAGTATGGCTGGGGAGAGTCTTTCCACTTTGCACCCAGATGGAAAGGGGAGTCTCTTCGAGAGAGTATCAAGCGACATGAGCACTTCCTTGCTTTACAACTAGGACTGAAACCTGGACAGAAAGTTCTGGATGTAGGTTGTGGAATTGGAGGACCACTGAGAGAAATAGCTCGCTTCAGCTTAGCATCAATTACTGGGTTGAACAACAATGAATATCAGATCACAAGAGGAAAGGAACTAAACCGTATCGTAGGAGTGGACAAGACCTGCAATTTTGTAAAGGCTGACTTCATGAAACTACCTTTTCCTGAGAATTCATTTGATGCAGTATATGCAATTGAAGCTACCTGCCATGCACCGGATGCATATGGATGCTACAAGGAGATTTACAGAGTATTAAAACCCGGTCAATGTTTTGCTGCGTATGAGTGGTGCATGACTGATGCGTTCGATACCAATAACCAAGAACATCAAAAAATTAAGGCGGAAATTGAGATTGGTGATGGCCTCCCAGACATCAGATTGACAGGAAAGTGTCTTGAAGCTTTGAAACAAGCCGGTTTTGAGGTGATATGGGAGAATGATCTTGCAGTGGACTCACCTCAATCTTGGTACTTGCCTTTGGACAAAAGTCGGATTTCATTTAGTAGCTTTCGTCTAACAGCTGTTGGGCGTTTTATTACTAAAAACATGGTCAAGGCTTTAGAATTTGTTGGACTTGCACCACCAGGAAGCCAAAGGGTTCAAGATTTTCTGGAGAAAGCAGCTGAAGGGCTAGTAGAAGGTGGAAAGAGAGAGATTTTTACACCGATGTATTTCTTCTTGGCCCGGAAGCCACTTTCAGAGAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005911 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008202 GO:0008610 GO:0008757 GO:0009058 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016125 GO:0016126 GO:0016740 GO:0016741 GO:0022414 GO:0030054 GO:0032259 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

CMAS Methyltransf_11 Sterol_MT_C

Protein Analysis

347

Amino Acids

38.92

Weight (kDa)

5.97

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13710 AT5G13710
fragaria_vesca	FvH4_7g01390 FvH4_7g01390 FvH4_7g01390
malus_domestica	MD02G1307400.v1.1 MD07G1018200.v1.1
prunus_persica	Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1
pyrus_communis	pycom02g25870 pycom07g01400
rosa_chinensis	RchiOBHm_Chr1g0317111 RchiOBHm_Chr3g0482141
rosa_laevigata	RLG00000023373 RLG00000030626
rosa_multiflora	Rmu_sc0000192.1_g000025 Rmu_sc0003689.1_g000012
rosa_roxburghii	Rroxscaffold_4G00330650 Rroxscaffold_6G00399690 Rroxscaffold_6G00400060
rosa_rugosa	Rorug01G0014800 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug03G0194900 Rorug03G0195000
rosa_samantha	Rh1BG022300 Rh1CG024000 Rh1DG047600 Rh3AG246200 Rh3BG281200 Rh3CG277300 Rh3DG273600
rosa_wichuraiana	Rw1G001790 Rw3G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	461, 542
AciI	CCGC	1 cut(s)	671
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	499, 893
AcuI	CTGAAG	2 cut(s)	346, 975
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	1 cut(s)	544
AgsI	TTSAA	6 cut(s)	80, 388, 527, 728, 736, 932
AjnI	CCWGG	2 cut(s)	298, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	9 cut(s)	11, 180, 356, 366, 530, 731, 837, 851, 953
AluI	AGCT	9 cut(s)	11, 180, 356, 366, 530, 731, 837, 851, 953
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	691, 1011
ApeKI	GCWGC	2 cut(s)	605, 950
ApoI	RAATTY	2 cut(s)	499, 893
AspS9I	GGNCC	2 cut(s)	338, 1012
AsuC2I	CCSGG	2 cut(s)	591, 1015
AsuHPI	GGTGA	3 cut(s)	698, 766, 777
AvaII	GGWCC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	592, 962
BccI	CCATC	2 cut(s)	219, 683
BciT130I	CCWGG	2 cut(s)	300, 915
BcnI	CCSGG	2 cut(s)	591, 1015
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	2 cut(s)	287, 962
BfuAI	ACCTGC	2 cut(s)	461, 542
BisI	GCNGC	2 cut(s)	606, 951
BlpI	GCTNAGC	1 cut(s)	367
BlsI	GCNGC	2 cut(s)	607, 952
Bme1390I	CCNGG	4 cut(s)	300, 591, 915, 1015
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	338, 1012
BmrFI	CCNGG	4 cut(s)	300, 591, 915, 1015
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	6 cut(s)	38, 380, 499, 538, 548, 619
BmuI	ACTGGG	1 cut(s)	390
BoxI	GACNNNNGTC	1 cut(s)	816
BpmI	CTGGAG	2 cut(s)	33, 962
Bpu1102I	GCTNAGC	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	591, 1015
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	300, 915
BseGI	GGATG	3 cut(s)	322, 553, 563
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	2 cut(s)	335, 486
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	592, 962
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	2 cut(s)	693, 1013
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	545, 591, 744, 1015
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	693, 1013
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	22, 166, 405, 769
Bsp1720I	GCTNAGC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	671
BspANI	GGCC	2 cut(s)	693, 1013
BspCNI	CTCAG	2 cut(s)	336, 487
BspHI	TCATGA	1 cut(s)	477
BspMI	ACCTGC	2 cut(s)	461, 542
BspPI	GGATC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	743
BssMI	GATC	4 cut(s)	22, 166, 405, 769
Bst2UI	CCWGG	2 cut(s)	300, 915
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	111, 246
BstAPI	GCANNNNNTGC	2 cut(s)	518, 548
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	344, 367, 495
BstF5I	GGATG	3 cut(s)	322, 553, 563
BstKTI	GATC	4 cut(s)	25, 169, 408, 772
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	22, 166, 405, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 518, 527, 548
BstNI	CCWGG	2 cut(s)	300, 915
BstPAI	GACNNNNGTC	1 cut(s)	816
BstSCI	CCNGG	4 cut(s)	298, 589, 913, 1013
BstV1I	GCAGC	2 cut(s)	592, 962
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	693, 1013
BtsCI	GGATG	3 cut(s)	322, 553, 563
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	341, 783
BveI	ACCTGC	2 cut(s)	461, 542
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	477
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	338, 1012
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	7 cut(s)	98, 148, 263, 478, 539, 622, 877
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	3 cut(s)	344, 367, 495
DpnI	GATC	4 cut(s)	24, 168, 407, 771
DpnII	GATC	4 cut(s)	22, 166, 405, 769
Eam1104I	CTCTTC	2 cut(s)	111, 246
EarI	CTCTTC	2 cut(s)	111, 246
EciI	GGCGGA	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	346, 975
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	298, 913
EcoT22I	ATGCAT	1 cut(s)	553
FaeI	CATG	7 cut(s)	101, 151, 266, 481, 542, 625, 880
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FatI	CATG	7 cut(s)	97, 147, 262, 477, 538, 621, 876
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	606, 951
FokI	GGATG	3 cut(s)	329, 560, 570
Fsp4HI	GCNGC	2 cut(s)	606, 951
FspBI	CTAG	2 cut(s)	287, 962
GluI	GCNGC	2 cut(s)	606, 951
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	33, 962
HaeIII	GGCC	2 cut(s)	693, 1013
HapII	CCGG	4 cut(s)	545, 591, 744, 1015
Hin1II	CATG	7 cut(s)	101, 151, 266, 481, 542, 625, 880
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	4 cut(s)	203, 236, 782, 1033
HpaII	CCGG	4 cut(s)	545, 591, 744, 1015
HphI	GGTGA	3 cut(s)	698, 766, 777
Hpy166II	GTNNAC	2 cut(s)	445, 781
Hpy188I	TCNGA	4 cut(s)	405, 707, 822, 1030
Hpy188III	TCNNGA	7 cut(s)	245, 314, 478, 494, 725, 932, 941
Hpy8I	GTNNAC	2 cut(s)	445, 781
HpyAV	CCTTC	2 cut(s)	950, 962
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	9 cut(s)	218, 456, 512, 521, 542, 551, 621, 776, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 518, 527, 548
HpyF3I	CTNAG	3 cut(s)	344, 367, 495
Hsp92II	CATG	7 cut(s)	101, 151, 266, 481, 542, 625, 880
Kzo9I	GATC	4 cut(s)	22, 166, 405, 769
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	2 cut(s)	592, 962
LweI	GCATC	6 cut(s)	38, 380, 499, 538, 548, 619
MaeI	CTAG	2 cut(s)	287, 962
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	4 cut(s)	24, 168, 407, 771
MboI	GATC	4 cut(s)	22, 166, 405, 769
MboII	GAAGA	3 cut(s)	128, 233, 997
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	8 cut(s)	330, 375, 457, 499, 522, 663, 675, 893
MlyI	GAGTC	3 cut(s)	212, 245, 776
MmeI	TCCRAC	2 cut(s)	800, 880
MnlI	CCTC	7 cut(s)	104, 112, 329, 407, 704, 745, 798
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	3 cut(s)	153, 584, 666
MslI	CAYNNNNRTG	2 cut(s)	223, 556
MspA1I	CMGCKG	2 cut(s)	851, 953
MspI	CCGG	4 cut(s)	545, 591, 744, 1015
MspR9I	CCNGG	4 cut(s)	300, 591, 915, 1015
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	300, 915
MwoI	GCNNNNNNNGC	4 cut(s)	265, 518, 527, 548
NciI	CCSGG	2 cut(s)	591, 1015
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	4 cut(s)	22, 166, 405, 769
NlaIII	CATG	7 cut(s)	101, 151, 266, 481, 542, 625, 880
NsiI	ATGCAT	1 cut(s)	553
PagI	TCATGA	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	607, 952
PleI	GAGTC	3 cut(s)	211, 244, 776
PpsI	GAGTC	3 cut(s)	211, 244, 776
PshAI	GACNNNNGTC	1 cut(s)	816
Psp6I	CCWGG	2 cut(s)	298, 913
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	2 cut(s)	298, 913
PspPI	GGNCC	2 cut(s)	338, 1012
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	2 cut(s)	851, 953
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	2 cut(s)	223, 556
SaqAI	TTAA	3 cut(s)	153, 584, 666
SatI	GCNGC	2 cut(s)	606, 951
Sau3AI	GATC	4 cut(s)	22, 166, 405, 769
Sau96I	GGNCC	2 cut(s)	338, 1012
SchI	GAGTC	3 cut(s)	212, 245, 776
ScrFI	CCNGG	4 cut(s)	300, 591, 915, 1015
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	6 cut(s)	38, 380, 499, 538, 548, 619
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	223, 556
Sse9I	AATT	8 cut(s)	330, 375, 457, 499, 522, 663, 675, 893
SsiI	CCGC	1 cut(s)	671
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	2 cut(s)	287, 962
StyD4I	CCNGG	4 cut(s)	298, 589, 913, 1013
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	3 cut(s)	5, 244, 636
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	8 cut(s)	330, 375, 457, 499, 522, 663, 675, 893
Tru1I	TTAA	3 cut(s)	153, 584, 666
Tru9I	TTAA	3 cut(s)	153, 584, 666
TscAI	CASTG	2 cut(s)	348, 783
TseI	GCWGC	2 cut(s)	605, 950
TspDTI	ATGAA	5 cut(s)	411, 466, 492, 494, 816
TspRI	CASTG	2 cut(s)	348, 783
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	499, 893
XspI	CTAG	2 cut(s)	287, 962
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.