Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003004

Physical Location & Seq

Genomic Coordinates Forward (+)

17163226 .. 17164036

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0194900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTCACCACCTTCAACTTTCTTTGGTTCCCAACGACCAAACTAGCCCTTCTCTTCCACTGCTTCAGGCCAAGGAAAGCATCATCTCTCAGTCTCAGAGTCATAGTACTACCGAGCAAGGAAGCACGTCTCCGAAGAGGGATCAAGATAATGAAGAGGAGATTGAGTCAGCTTGGTCAAGCAATGAGGAGATTACAATATTAGGTCTGGCTTCAACTCAAGTGGGTGCAGCAGAAGAACCCAGTAAAGGCTATGACGAGGTCTTGGCAGTAGCAGAAGATAGTGGACGTGAGAGGTTGAGGAAGCACCGGGTTGAGATGGCGGGTCGGGTCTGGATTCCGGATATTTGGGGCCAGGAGGAGTTTCTCAAGGACTGGGTTGATTGTACTGTTTTTGATGATTCTTTGTTTCCTAATGGGTTTATGTCAGCTCGTAGTGCTTTGATTGAAGAAGGAAGGAGAGGAACTTCAGGCAGAGTAAGAATAGAAAACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

Methyltransf_11 Sterol_MT_C

Protein Analysis

166

Amino Acids

18.53

Weight (kDa)

4.74

Isoelectric Point (pI)

77.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13710 AT5G13710
fragaria_vesca	FvH4_7g01390 FvH4_7g01390 FvH4_7g01390
malus_domestica	MD02G1307400.v1.1 MD07G1018200.v1.1
prunus_persica	Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1
pyrus_communis	pycom02g25870 pycom07g01400
rosa_chinensis	RchiOBHm_Chr1g0317111 RchiOBHm_Chr3g0482141
rosa_laevigata	RLG00000023373 RLG00000030626
rosa_multiflora	Rmu_sc0000192.1_g000025 Rmu_sc0003689.1_g000012
rosa_roxburghii	Rroxscaffold_4G00330650 Rroxscaffold_6G00399690 Rroxscaffold_6G00400060
rosa_rugosa	Rorug01G0014800 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug03G0194900 Rorug03G0195000
rosa_samantha	Rh1BG022300 Rh1CG024000 Rh1DG047600 Rh3AG246200 Rh3BG281200 Rh3CG277300 Rh3DG273600
rosa_wichuraiana	Rw1G001790 Rw3G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	50, 453
AfaI	GTAC	2 cut(s)	109, 388
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	17, 216, 449
AjiI	CACGTC	2 cut(s)	129, 290
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	173, 431
AluI	AGCT	2 cut(s)	173, 431
Alw26I	GTCTC	2 cut(s)	99, 135
AlwI	GGATC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	2 cut(s)	69, 352
ApeKI	GCWGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	99, 135
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	311, 356
BmgBI	CACGTC	2 cut(s)	129, 290
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	30, 353
BmrFI	CCNGG	2 cut(s)	311, 356
BmrI	ACTGGG	2 cut(s)	237, 385
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	2 cut(s)	237, 385
BpuEI	CTTGAG	2 cut(s)	204, 353
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	243, 380
Bse3DI	GCAATG	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	104, 110
BseNI	ACTGG	2 cut(s)	243, 380
BseRI	GAGGAG	3 cut(s)	173, 203, 374
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	71, 354
BsiSI	CCGG	2 cut(s)	310, 341
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	99, 135
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	71, 354
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	71, 354
BspCNI	CTCAG	2 cut(s)	103, 109
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	30, 353
BspPI	GGATC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	243, 380
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	3 cut(s)	60, 131, 150
BstDEI	CTNAG	2 cut(s)	90, 96
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	99, 135
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	309, 354
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	71, 354
BtrI	CACGTC	2 cut(s)	129, 290
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	108, 387
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviJI	RGCY	8 cut(s)	5, 48, 71, 173, 212, 252, 354, 431
CviKI_1	RGCY	8 cut(s)	5, 48, 71, 173, 212, 252, 354, 431
CviQI	GTAC	2 cut(s)	108, 387
DdeI	CTNAG	2 cut(s)	90, 96
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	60, 131, 150
EarI	CTCTTC	3 cut(s)	60, 131, 150
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	50, 453
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	135
FaiI	YATR	3 cut(s)	105, 255, 425
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	71, 354
HapII	CCGG	2 cut(s)	310, 341
HinfI	GANTC	4 cut(s)	100, 167, 337, 401
HpaII	CCGG	2 cut(s)	310, 341
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	99, 135
Hpy188III	TCNNGA	3 cut(s)	146, 334, 341
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	4 cut(s)	23, 60, 446, 450
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	128, 289
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	90, 96
HpySE526I	ACGT	2 cut(s)	128, 289
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	128, 289
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	6 cut(s)	47, 148, 167, 248, 290, 461
MlyI	GAGTC	2 cut(s)	109, 176
MnlI	CCTC	8 cut(s)	132, 151, 181, 253, 288, 294, 352, 455
MroI	TCCGGA	1 cut(s)	340
MspI	CCGG	2 cut(s)	310, 341
MspR9I	CCNGG	2 cut(s)	311, 356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	30, 353
PfeI	GAWTC	2 cut(s)	337, 401
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	108, 175
PpsI	GAGTC	2 cut(s)	108, 175
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	30, 353
PspPI	GGNCC	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	109, 388
RsaNI	GTAC	2 cut(s)	108, 387
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	2 cut(s)	109, 176
ScrFI	CCNGG	2 cut(s)	311, 356
SetI	ASST	9 cut(s)	15, 131, 175, 208, 264, 292, 299, 433, 497
SfaNI	GCATC	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	219, 368
SmoI	CTYRAG	2 cut(s)	219, 368
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	309, 354
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	131, 292
TatI	WGTACW	2 cut(s)	107, 386
TfiI	GAWTC	2 cut(s)	337, 401
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	66
Tth111I	GACNNNGTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.