Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000192.1

Orthogroup ID

OG0003004

Physical Location & Seq

Genomic Coordinates Reverse (-)

121401 .. 125439

Gene Structure 4039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000192.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgtcaaaatctggagcactggatctggcttctggggttggcgggaagcttgagaagcaccaagttctttcagctgtccacaaaaatggtctttggactcttagtcacattgatcaaagtatcttgcaggaactcaatcaccttgcaggagtggatgagacctgcaactttgtcaagtttgattgctacaaagaaatatatagagtgttgaagccaggacagtgttttgctgcttacgagtggtgcattactgattcctttgatcgaacaaactatgaacaccagcgaattaagggggaagttgagcttggcaatggacttcctgatatcagatcaaaagaacaatgtattcacgctctaaatgttgcaggttttgaggttatatgggaaaatgatgtttctgtgggttcaccgcttccttggtatatgccactagataaaagtcacatttcattgagtagcttccggcttacagctttggggcgtttcattactagaacaatggtcaaagccttagagtttttacgccttgcccctgagggtagccaaagagttcagtctttcctagagacaacagcagaagctcttgttgaaggtggaaggaaagggatcttcacaccaatgtacttcttcttggttcgaaagcctgaagctccaaacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

Methyltransf_11 Sterol_MT_C

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

6.39

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13710 AT5G13710
fragaria_vesca	FvH4_7g01390 FvH4_7g01390 FvH4_7g01390
malus_domestica	MD02G1307400.v1.1 MD07G1018200.v1.1
prunus_persica	Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1
pyrus_communis	pycom02g25870 pycom07g01400
rosa_chinensis	RchiOBHm_Chr1g0317111 RchiOBHm_Chr3g0482141
rosa_laevigata	RLG00000023373 RLG00000030626
rosa_multiflora	Rmu_sc0000192.1_g000025 Rmu_sc0003689.1_g000012
rosa_roxburghii	Rroxscaffold_4G00330650 Rroxscaffold_6G00399690 Rroxscaffold_6G00400060
rosa_rugosa	Rorug01G0014800 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug03G0194900 Rorug03G0195000
rosa_samantha	Rh1BG022300 Rh1CG024000 Rh1DG047600 Rh3AG246200 Rh3BG281200 Rh3CG277300 Rh3DG273600
rosa_wichuraiana	Rw1G001790 Rw3G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	170, 359
AciI	CCGC	2 cut(s)	42, 413
AclWI	GGATC	2 cut(s)	30, 617
AfaI	GTAC	1 cut(s)	626
AgsI	TTSAA	2 cut(s)	211, 593
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	7 cut(s)	49, 74, 307, 462, 476, 584, 653
AluI	AGCT	7 cut(s)	49, 74, 307, 462, 476, 584, 653
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	152, 563
AlwI	GGATC	2 cut(s)	30, 617
ApeKI	GCWGC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	131, 402
AsuII	TTCGAA	1 cut(s)	640
AxyI	CCTNAGG	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	152, 563
BfaI	CTAG	3 cut(s)	434, 495, 566
BfuAI	ACCTGC	2 cut(s)	170, 359
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	216
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	640
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	466
BsmAI	GTCTC	2 cut(s)	152, 563
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	5 cut(s)	22, 112, 262, 332, 609
BspACI	CCGC	2 cut(s)	42, 413
BspCNI	CTCAG	1 cut(s)	529
BspMI	ACCTGC	2 cut(s)	170, 359
BspPI	GGATC	2 cut(s)	30, 617
BspT104I	TTCGAA	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	5 cut(s)	22, 112, 262, 332, 609
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	640
BstDEI	CTNAG	3 cut(s)	101, 514, 537
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	5 cut(s)	25, 115, 265, 335, 612
BstMAI	GTCTC	2 cut(s)	152, 563
BstMBI	GATC	5 cut(s)	22, 112, 262, 332, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	22, 609
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	2 cut(s)	22, 609
Bsu36I	CCTNAGG	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	17, 227
BveI	ACCTGC	2 cut(s)	170, 359
Csp6I	GTAC	1 cut(s)	625
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	3 cut(s)	101, 514, 537
DpnI	GATC	5 cut(s)	24, 114, 264, 334, 611
DpnII	GATC	5 cut(s)	22, 112, 262, 332, 609
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaiI	YATR	7 cut(s)	199, 201, 276, 383, 385, 426, 428
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	434, 495, 566
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	97, 254
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	2 cut(s)	131, 402
Hpy166II	GTNNAC	2 cut(s)	79, 410
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	2 cut(s)	12, 323
Hpy8I	GTNNAC	2 cut(s)	79, 410
HpyAV	CCTTC	2 cut(s)	587, 594
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	127, 146, 165, 246, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	101, 514, 537
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	22, 112, 262, 332, 609
LmnI	GCTCC	2 cut(s)	14, 658
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	434, 495, 566
MaeIII	GTNAC	2 cut(s)	104, 443
MalI	GATC	5 cut(s)	24, 114, 264, 334, 611
MboI	GATC	5 cut(s)	22, 112, 262, 332, 609
MboII	GAAGA	2 cut(s)	604, 622
MflI	RGATCY	2 cut(s)	22, 609
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	2 cut(s)	370, 532
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	84, 620
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	5 cut(s)	22, 112, 262, 332, 609
NmuCI	GTSAC	2 cut(s)	104, 443
NspV	TTCGAA	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	22, 609
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	84, 620
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	22, 112, 262, 332, 609
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	640
SmiMI	CAYNNNNRTG	2 cut(s)	84, 620
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	42, 413
SspMI	CTAG	3 cut(s)	434, 495, 566
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	265, 640
TasI	AATT	1 cut(s)	288
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	24, 227
TseFI	GTSAC	2 cut(s)	104, 443
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	2 cut(s)	104, 443
TspDTI	ATGAA	3 cut(s)	291, 441, 478
TspRI	CASTG	2 cut(s)	24, 227
XspI	CTAG	3 cut(s)	434, 495, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.