Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003004

Physical Location & Seq

Genomic Coordinates Reverse (-)

7699408 .. 7704040

Gene Structure 4633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG047600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCGAAAGCTGGAGCATTTGATCTCGCATCGGGTCTCGGTGGCAAGATCGACAAAAGAGATGTTCTTTCTGCTGTTGACAAGTATGAGAAGTATCATGTCTGTTATGGAGGTGAAGAGGAAGCGAGAAAATCAAACTATACTGATATGGTTAATAAATATTATGATCTGGTTACCAGCTTTTATGAGTATGGCTGGGGAGAGTCCTTCCATTTTGCACCCAGATGGAAAGGAGAGTCTCTTCGAGAGAGCATCAAGAGGCATGAACACTTCCTTGCCTTACAACTAGGACTGAAACCTGGACAGAAGGTTTTGGATGTAGGTTGTGGAATTGGAGGACCACTTAGAGAAATAGCACGCTTCAGCTCGACGTCAATTACTGGGTTGAACAACAATGAATATCAGATAACAAGAGGAAAGGAACTGAACCGCATTGTTGGAATTGACAAGACCTGTGACTTTGTTAAGGCCGACTTCATGAAAATACCATTTCCTGAAAATACGTTTGATGCAGTATATGCAATCGAAGCTACCTGCCATGCACCAGATGCATATGGATGTTACAAAGAGATTTATAGAGTACTAAAACCTGGTCAATGTTTTGCTGCATATGAGTGGTGCATGACTGATTCGTTTGATCCCAATAACGCAGAACATCAAAAAATTAAGGCAGAGATTGAGATTGGTGATGGCCTCCCGGACATCAGATTGACAGTAAAGTGCCTTGAAGCTTTGAAACAAGCAGGTTTTGAGGTCATATGGGAGAAAGATCTTGCAAAGGACGTAAAGGAGTCACCTCTTCCTTGGTACTTGCCTTTGGACACAAGTCGCATTTCACTTAGTAGTTTCCGTCTAACAGCTGTTGGCCGCTTTTTTACTAGAAACATGGTCAAAGCTTTAGAATATGTTGGACTTGCTCCACAAGGAAGCCAAAGAGTTCAAGATTTTCTAGAGAAAGCTGCTGAAGGGCTAGTCGAAGGTGGAAAGAAAGAGATCTTCACACCAATGTATTTCTTTGTGGCCCGGAAGCCACTTTCAGCTGCAGATAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005911 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008202 GO:0008610 GO:0008757 GO:0009058 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016125 GO:0016126 GO:0016740 GO:0016741 GO:0022414 GO:0030054 GO:0032259 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

CMAS Methyltransf_11 Sterol_MT_C

Protein Analysis

351

Amino Acids

39.56

Weight (kDa)

6.15

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	45 - 269	1.5e-10	Mycolic acid cyclopropane synthetase
Ubie_methyltran	PF01209	91 - 206	1.2e-09	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	92 - 199	4.2e-08	Methyltransferase domain
Methyltransf_31	PF13847	99 - 218	7.3e-15	Methyltransferase domain
Methyltransf_25	PF13649	104 - 198	2.1e-17	Methyltransferase domain
Methyltransf_11	PF08241	105 - 200	1.3e-20	Methyltransferase domain
Methyltransf_12	PF08242	105 - 198	3.2e-08	Methyltransferase domain
Sterol_MT_C	PF08498	281 - 344	1.6e-30	Sterol methyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13710 AT5G13710
fragaria_vesca	FvH4_7g01390 FvH4_7g01390 FvH4_7g01390
malus_domestica	MD02G1307400.v1.1 MD07G1018200.v1.1
prunus_persica	Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1 Prupe.2G019200_v2.0.a1
pyrus_communis	pycom02g25870 pycom07g01400
rosa_chinensis	RchiOBHm_Chr1g0317111 RchiOBHm_Chr3g0482141
rosa_laevigata	RLG00000023373 RLG00000030626
rosa_multiflora	Rmu_sc0000192.1_g000025 Rmu_sc0003689.1_g000012
rosa_roxburghii	Rroxscaffold_4G00330650 Rroxscaffold_6G00399690 Rroxscaffold_6G00400060
rosa_rugosa	Rorug01G0014800 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug01G0014900 Rorug03G0194900 Rorug03G0195000
rosa_samantha	Rh1BG022300 Rh1CG024000 Rh1DG047600 Rh3AG246200 Rh3BG281200 Rh3CG277300 Rh3DG273600
rosa_wichuraiana	Rw1G001790 Rw3G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	374
Acc36I	ACCTGC	2 cut(s)	542, 734
AciI	CCGC	2 cut(s)	430, 868
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	865
AcuI	CTGAAG	2 cut(s)	346, 984
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	2 cut(s)	582, 809
AgsI	TTSAA	4 cut(s)	388, 728, 736, 941
AjnI	CCWGG	2 cut(s)	298, 589
AluBI	AGCT	9 cut(s)	11, 180, 366, 530, 731, 860, 896, 959, 1040
AluI	AGCT	9 cut(s)	11, 180, 366, 530, 731, 860, 896, 959, 1040
Alw26I	GTCTC	2 cut(s)	41, 243
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	4 cut(s)	468, 691, 865, 1020
ApeKI	GCWGC	3 cut(s)	605, 959, 1040
AspS9I	GGNCC	2 cut(s)	338, 1021
AsuC2I	CCSGG	2 cut(s)	698, 1024
AsuHPI	GGTGA	3 cut(s)	125, 698, 786
AvaII	GGWCC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	592, 946, 1027
BccI	CCATC	2 cut(s)	219, 683
BciT130I	CCWGG	2 cut(s)	300, 591
BcnI	CCSGG	2 cut(s)	698, 1024
BcoDI	GTCTC	2 cut(s)	41, 243
BfaI	CTAG	4 cut(s)	287, 879, 950, 971
BfmI	CTRYAG	1 cut(s)	1041
BfuAI	ACCTGC	2 cut(s)	542, 734
BglII	AGATCT	2 cut(s)	769, 993
BisI	GCNGC	4 cut(s)	606, 868, 960, 1041
BlsI	GCNGC	4 cut(s)	607, 869, 961, 1042
BmcAI	AGTACT	1 cut(s)	582
Bme1390I	CCNGG	4 cut(s)	300, 591, 698, 1024
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	338, 1021
BmrFI	CCNGG	4 cut(s)	300, 591, 698, 1024
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	38, 261, 499, 538
BmuI	ACTGGG	1 cut(s)	390
BoxI	GACNNNNGTC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	698, 1024
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	803
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	300, 591
BseDI	CCNNGG	1 cut(s)	803
BseGI	GGATG	2 cut(s)	322, 563
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	592, 946, 1027
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	4 cut(s)	470, 693, 867, 1022
BsiSI	CCGG	2 cut(s)	698, 1024
BsmAI	GTCTC	2 cut(s)	41, 243
BsnI	GGCC	4 cut(s)	470, 693, 867, 1022
Bso31I	GGTCTC	1 cut(s)	41
Bsp143I	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
BspACI	CCGC	2 cut(s)	430, 868
BspANI	GGCC	4 cut(s)	470, 693, 867, 1022
BspHI	TCATGA	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	1045
BspMI	ACCTGC	2 cut(s)	542, 734
BspPI	GGATC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	803
BssMI	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	803
Bst2UI	CCWGG	2 cut(s)	300, 591
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	3 cut(s)	111, 246, 804
BstACI	GRCGYC	1 cut(s)	371
BstAPI	GCANNNNNTGC	2 cut(s)	518, 548
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	344, 839
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	322, 563
BstKTI	GATC	6 cut(s)	25, 51, 169, 640, 772, 996
BstMAI	GTCTC	2 cut(s)	41, 243
BstMBI	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 527, 548
BstNI	CCWGG	2 cut(s)	300, 591
BstPAI	GACNNNNGTC	1 cut(s)	825
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	4 cut(s)	298, 589, 696, 1022
BstSFI	CTRYAG	1 cut(s)	1041
BstV1I	GCAGC	3 cut(s)	592, 946, 1027
BstX2I	RGATCY	2 cut(s)	769, 993
BstYI	RGATCY	2 cut(s)	769, 993
BsuRI	GGCC	4 cut(s)	470, 693, 867, 1022
BtsCI	GGATG	2 cut(s)	322, 563
BveI	ACCTGC	2 cut(s)	542, 734
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	477
Cfr13I	GGNCC	2 cut(s)	338, 1021
CsiI	ACCWGGT	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	581, 808
CviAII	CATG	6 cut(s)	98, 263, 478, 539, 622, 886
CviQI	GTAC	2 cut(s)	581, 808
DdeI	CTNAG	2 cut(s)	344, 839
DpnI	GATC	6 cut(s)	24, 50, 168, 639, 771, 995
DpnII	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
EaeI	YGGCCR	1 cut(s)	865
Eam1104I	CTCTTC	3 cut(s)	111, 246, 804
EarI	CTCTTC	3 cut(s)	111, 246, 804
Eco130I	CCWWGG	1 cut(s)	803
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	346, 984
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	298, 589
EcoT14I	CCWWGG	1 cut(s)	803
EcoT22I	ATGCAT	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	803
FaeI	CATG	6 cut(s)	101, 266, 481, 542, 625, 889
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FatI	CATG	6 cut(s)	97, 262, 477, 538, 621, 885
FauNDI	CATATG	3 cut(s)	553, 610, 758
Fnu4HI	GCNGC	4 cut(s)	606, 868, 960, 1041
FokI	GGATG	2 cut(s)	329, 570
Fsp4HI	GCNGC	4 cut(s)	606, 868, 960, 1041
FspBI	CTAG	4 cut(s)	287, 879, 950, 971
GluI	GCNGC	4 cut(s)	606, 868, 960, 1041
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	470, 693, 867, 1022
HapII	CCGG	2 cut(s)	698, 1024
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	6 cut(s)	101, 266, 481, 542, 625, 889
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	729, 894
HinfI	GANTC	4 cut(s)	203, 236, 629, 791
HpaII	CCGG	2 cut(s)	698, 1024
HphI	GGTGA	3 cut(s)	125, 698, 786
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	405, 707
Hpy188III	TCNNGA	6 cut(s)	245, 256, 478, 494, 941, 950
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	4 cut(s)	217, 301, 959, 971
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	3 cut(s)	371, 503, 783
HpyCH4V	TGCA	9 cut(s)	218, 512, 521, 542, 551, 608, 621, 776, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 527, 548
HpyF3I	CTNAG	2 cut(s)	344, 839
HpySE526I	ACGT	3 cut(s)	371, 503, 783
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	6 cut(s)	101, 266, 481, 542, 625, 889
Kzo9I	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
LmnI	GCTCC	2 cut(s)	14, 922
Lsp1109I	GCAGC	3 cut(s)	592, 946, 1027
LweI	GCATC	4 cut(s)	38, 261, 499, 538
MabI	ACCWGGT	1 cut(s)	589
MaeI	CTAG	4 cut(s)	287, 879, 950, 971
MaeII	ACGT	3 cut(s)	371, 503, 783
MaeIII	GTNAC	4 cut(s)	172, 455, 560, 792
MalI	GATC	6 cut(s)	24, 50, 168, 639, 771, 995
MboI	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
MboII	GAAGA	4 cut(s)	128, 233, 791, 988
MflI	RGATCY	2 cut(s)	769, 993
MluCI	AATT	4 cut(s)	330, 375, 441, 663
MlyI	GAGTC	3 cut(s)	212, 245, 800
MmeI	TCCRAC	2 cut(s)	418, 889
MnlI	CCTC	8 cut(s)	104, 112, 252, 329, 407, 704, 745, 807
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	3 cut(s)	153, 465, 666
MslI	CAYNNNNRTG	4 cut(s)	223, 556, 613, 1004
MspA1I	CMGCKG	2 cut(s)	860, 1040
MspI	CCGG	2 cut(s)	698, 1024
MspR9I	CCNGG	4 cut(s)	300, 591, 698, 1024
MvaI	CCWGG	2 cut(s)	300, 591
MwoI	GCNNNNNNNGC	3 cut(s)	518, 527, 548
NciI	CCSGG	2 cut(s)	698, 1024
NdeI	CATATG	3 cut(s)	553, 610, 758
NdeII	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
NlaIII	CATG	6 cut(s)	101, 266, 481, 542, 625, 889
NmuCI	GTSAC	2 cut(s)	455, 792
NsiI	ATGCAT	1 cut(s)	553
PagI	TCATGA	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	629
PfoI	TCCNGGA	1 cut(s)	696
PkrI	GCNGC	4 cut(s)	607, 869, 961, 1042
PleI	GAGTC	3 cut(s)	211, 244, 799
PpsI	GAGTC	3 cut(s)	211, 244, 799
PshAI	GACNNNNGTC	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	298, 589
PspEI	GGTNACC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	2 cut(s)	298, 589
PspPI	GGNCC	2 cut(s)	338, 1021
PstI	CTGCAG	1 cut(s)	1045
PsuI	RGATCY	2 cut(s)	769, 993
PvuII	CAGCTG	2 cut(s)	860, 1040
RsaI	GTAC	2 cut(s)	582, 809
RsaNI	GTAC	2 cut(s)	581, 808
RseI	CAYNNNNRTG	4 cut(s)	223, 556, 613, 1004
SaqAI	TTAA	3 cut(s)	153, 465, 666
SatI	GCNGC	4 cut(s)	606, 868, 960, 1041
Sau3AI	GATC	6 cut(s)	22, 48, 166, 637, 769, 993
Sau96I	GGNCC	2 cut(s)	338, 1021
ScaI	AGTACT	1 cut(s)	582
SchI	GAGTC	3 cut(s)	212, 245, 800
ScrFI	CCNGG	4 cut(s)	300, 591, 698, 1024
SexAI	ACCWGGT	1 cut(s)	589
SfaNI	GCATC	4 cut(s)	38, 261, 499, 538
SfcI	CTRYAG	1 cut(s)	1041
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	4 cut(s)	223, 556, 613, 1004
Sse9I	AATT	4 cut(s)	330, 375, 441, 663
SsiI	CCGC	2 cut(s)	430, 868
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	4 cut(s)	287, 879, 950, 971
StyD4I	CCNGG	4 cut(s)	298, 589, 696, 1022
StyI	CCWWGG	1 cut(s)	803
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	3 cut(s)	374, 506, 786
TaqI	TCGA	6 cut(s)	5, 51, 244, 368, 525, 975
TasI	AATT	4 cut(s)	330, 375, 441, 663
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	870
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	3 cut(s)	153, 465, 666
Tru9I	TTAA	3 cut(s)	153, 465, 666
TseFI	GTSAC	2 cut(s)	455, 792
TseI	GCWGC	3 cut(s)	605, 959, 1040
Tsp45I	GTSAC	2 cut(s)	455, 792
TspDTI	ATGAA	4 cut(s)	279, 411, 466, 494
TspGWI	ACGGA	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	338
XbaI	TCTAGA	1 cut(s)	949
XspI	CTAG	4 cut(s)	287, 879, 950, 971
ZraI	GACGTC	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.