Rh3AG246200
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003004
Physical Location & Seq
Forward (+)
26257175 .. 26262564
5390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG246200.1

Sequence Viewer

Length: 813 bp
ATGTCAAAATCTGGAGCACTGGATCTGGCTTCTCGGGTTGGTGGGAAGATTGAGAGAAACCAAGTTCTTTCAGCTGTCCACAAATATGAGAAGTATCACTTTGGGGATGAGGAAGACAGAAAAGCCAACTATACTGACATGGCTTTGGATGTAGGATGTGGGATTGGTGGACCTATGAGAGAAATTACTAGATTCAGTGGGGCATCAGTTACAGGGATAAACAACAACGAATATCAAATAACTAGAGCAAAGGAACTCAATCACCTTGCAGGAGTGGATGAGACCTGCAACTTTGTCAAGGCAGACTTTATGAACATGCCATTTCCTGATAACACTTTTGATGCAATATTTGCAATAGAAGCCACATGCCATGCACCAAATGTGTTTGATTGCTACAAAGAAATATATAGAGTGTTGAAGCCAGGACAGTGTTTTGCTGCTTACGAGTGGTGCATTACTGACTCCTTTGATCGAACAAACCATGAACACCAGAGAATTAAGGGGGAAGTTGAGCTTGGCAATGGACTTCCTGATATCAGATCAAAAGAACAACGTATTCACGCTCTAAATGTTGCAGGTTTTGAGGTTATATGGGAAAATGATGTTTCTGTGGGTTCACCGCTTCCTTGGTATATGCCACTAGATAAAAGTCACATTTCATTGAGTAGCTTCCGGCTTACAGCTTTGGGGCGTTTCATTACTAGAACAATGGTCAAAGCCTTAGAGTTTTTACGCCTTGCCCCTGAGGGTAGCCAAAGATTTCAGTCTTTCCTAGAGACAACAGCAGAAGCTCTTGTTGAAGGTGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130
Pfam Domains
Protein Families
Methyltransf_11 Sterol_MT_C

Protein Analysis

270

Amino Acids

30.34

Weight (kDa)

5.66

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubie_methyltran PF01209 43 - 149 2e-07 ubiE/COQ5 methyltransferase family
CMAS PF02353 47 - 168 8.3e-06 Mycolic acid cyclopropane synthetase
Methyltransf_31 PF13847 48 - 165 1.8e-15 Methyltransferase domain
Methyltransf_23 PF13489 48 - 196 3.5e-07 Methyltransferase domain
Methyltransf_11 PF08241 49 - 144 8e-23 Methyltransferase domain
Methyltransf_25 PF13649 49 - 142 7.1e-19 Methyltransferase domain
Methyltransf_12 PF08242 49 - 142 8.3e-10 Methyltransferase domain
Sterol_MT_C PF08498 222 - 270 4.5e-15 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 293, 566
AciI CCGC 1 cut(s) 620
AclWI GGATC 1 cut(s) 30
AgsI TTSAA 2 cut(s) 418, 800
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 5 cut(s) 74, 514, 669, 683, 791
AluI AGCT 5 cut(s) 74, 514, 669, 683, 791
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 275, 770
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 254, 609
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 275, 770
BfaI CTAG 5 cut(s) 189, 243, 641, 702, 773
BfuAI ACCTGC 2 cut(s) 293, 566
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 212, 331
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 626
Bse1I ACTGG 1 cut(s) 24
Bse21I CCTNAGG 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 4 cut(s) 112, 154, 161, 283
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 673
BsmAI GTCTC 2 cut(s) 275, 770
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 22, 469, 539
BspACI CCGC 1 cut(s) 620
BspCNI CTCAG 1 cut(s) 736
BspMI ACCTGC 2 cut(s) 293, 566
BspPI GGATC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 3 cut(s) 22, 469, 539
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 429
BstAPI GCANNNNNTGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 721, 744
BstF5I GGATG 4 cut(s) 112, 154, 161, 283
BstKTI GATC 3 cut(s) 25, 472, 542
BstMAI GTCTC 2 cut(s) 275, 770
BstMBI GATC 3 cut(s) 22, 469, 539
BstMWI GCNNNNNNNGC 2 cut(s) 350, 359
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 319, 369
BstSCI CCNGG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 744
BtsCI GGATG 4 cut(s) 112, 154, 161, 283
BtsIMutI CAGTG 3 cut(s) 17, 202, 434
BveI ACCTGC 2 cut(s) 293, 566
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 5 cut(s) 139, 316, 366, 371, 482
DdeI CTNAG 2 cut(s) 721, 744
DpnI GATC 3 cut(s) 24, 471, 541
DpnII GATC 3 cut(s) 22, 469, 539
Eco130I CCWWGG 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 5 cut(s) 142, 319, 369, 374, 485
FalI AAGNNNNNCTT 6 cut(s) 83, 115, 290, 322, 498, 530
FatI CATG 5 cut(s) 138, 315, 365, 370, 481
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 4 cut(s) 119, 161, 168, 290
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 5 cut(s) 189, 243, 641, 702, 773
GluI GCNGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 1 cut(s) 673
Hin1II CATG 5 cut(s) 142, 319, 369, 374, 485
HinfI GANTC 2 cut(s) 192, 461
HpaII CCGG 1 cut(s) 673
HphI GGTGA 2 cut(s) 254, 609
Hpy166II GTNNAC 3 cut(s) 79, 170, 617
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 3 cut(s) 12, 326, 530
Hpy8I GTNNAC 3 cut(s) 79, 170, 617
HpyAV CCTTC 2 cut(s) 794, 801
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 7 cut(s) 269, 288, 344, 353, 374, 453, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 359
HpyF3I CTNAG 2 cut(s) 721, 744
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 5 cut(s) 142, 319, 369, 374, 485
Kzo9I GATC 3 cut(s) 22, 469, 539
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 212, 331
MaeI CTAG 5 cut(s) 189, 243, 641, 702, 773
MaeII ACGT 1 cut(s) 553
MaeIII GTNAC 2 cut(s) 208, 650
MalI GATC 3 cut(s) 24, 471, 541
MboI GATC 3 cut(s) 22, 469, 539
MboII GAAGA 2 cut(s) 58, 125
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 183, 495
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 3 cut(s) 103, 577, 739
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 673
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 350, 359
NdeII GATC 3 cut(s) 22, 469, 539
NlaIII CATG 5 cut(s) 142, 319, 369, 374, 485
NmuCI GTSAC 1 cut(s) 650
NspI RCATGY 2 cut(s) 319, 369
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 3 cut(s) 22, 469, 539
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 2 cut(s) 212, 331
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 2 cut(s) 183, 495
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 348
SspMI CTAG 5 cut(s) 189, 243, 641, 702, 773
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 1 cut(s) 429
TaiI ACGT 1 cut(s) 556
TaqI TCGA 1 cut(s) 472
TasI AATT 2 cut(s) 183, 495
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 3 cut(s) 24, 202, 434
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 4 cut(s) 326, 498, 648, 685
TspRI CASTG 3 cut(s) 24, 202, 434
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 2 cut(s) 319, 369
XspI CTAG 5 cut(s) 189, 243, 641, 702, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.