Rh3CG277300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003004
Physical Location & Seq
Forward (+)
27662797 .. 27667406
4610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG277300.1

Sequence Viewer

Length: 1023 bp
ATGTCAAAATCTGGAGCACTGGATCTGGCTTCTGGGGTTGGCGGGAAGCTTGAGAAGCACCAAGTTCTTTCAGCTGTCCACAAATATGAGAAGTATCACTTTGGGGATGAGGAAGACAGAAAAGCCAACTATACTGACATGGTTAACAAATACTATGATCTCGTCACAAGCTTTTATGAATATGGATGGGGTGAGTCCTTCCATTTTGCACCAAGATGGAAGCAAGAGTCCCTAAAAGAGAGCATCAAGCGGCATGAGCATTTTCTCGCTCTGCAACTGGGTCTAAAGCAAGGGCATAAGGTTTTGGATGTAGGATGTGGGATTGGTGGACCTATGAGAGAAATTACTAGATTCAGTGGTGCATCAGTTACAGGGATAAACAACAACGAATATCAAATAACTAGAGCAAAGGAACTCAATCACCTTGCAGGAGTGGATGAGACCTGCAACTTTGTCAAGGCAGACTTTATGAACATGCCATTTCCTGATAACACTTTTGATGCAATATTTGCAATAGAAGCCACATGCCATGCACCAAATGTGTTTGATTGCTACAAAGAAATATATCGAGTGTTGAAGCCAGGACAGTGTTTTGCTGCTTATGAGTGGTGCATTACTGACTCCTTTGATCGAACAAACCATGAACACCAGAGAATTAAGGGGGAAGTTGAGCTTGGCAATGGACTTCCTGATATCAGATCAAAAGAACAATGTATTCACGCTCTAAATGTTGCAGGCTTTGAGGTTATATGGGAAAATGATGTTTCTGTGGGTTCACCGCTTCCTTGGTATATGTCACTAGATAAAAGTCACATTTCACTGAGTAGCTTCCGGCTAACAGCTTTGGGGCGTTTCATTACTAGAACAATGGTCAAAGCCTTGGAGTTTTTACGCCTTGCCCCTGAGGGTAGCCAAAGAGTTCAGTCTTTCCTAGAGACAACAGCAGAAGCTCTTGTTGAAGGTGGAAGGAAAGGGATCTTCACACCAATGTACTTCTTCTTGGTTCGGAAGCCTGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130
Pfam Domains
Protein Families
Methyltransf_11 Sterol_MT_C

Protein Analysis

340

Amino Acids

38.58

Weight (kDa)

6.24

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 42 - 230 3.9e-12 Mycolic acid cyclopropane synthetase
Ubie_methyltran PF01209 88 - 202 4.5e-09 ubiE/COQ5 methyltransferase family
Methyltransf_23 PF13489 89 - 250 9e-10 Methyltransferase domain
Methyltransf_31 PF13847 96 - 217 4.8e-17 Methyltransferase domain
Methyltransf_25 PF13649 101 - 195 2.5e-19 Methyltransferase domain
Methyltransf_11 PF08241 102 - 197 1.3e-22 Methyltransferase domain
Methyltransf_12 PF08242 102 - 195 1.3e-09 Methyltransferase domain
Sterol_MT_C PF08498 275 - 338 2.3e-28 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 452
AciI CCGC 3 cut(s) 42, 250, 779
AclWI GGATC 2 cut(s) 30, 983
AfaI GTAC 1 cut(s) 992
AgsI TTSAA 2 cut(s) 577, 959
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 7 cut(s) 49, 74, 171, 673, 828, 842, 950
AluI AGCT 7 cut(s) 49, 74, 171, 673, 828, 842, 950
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 434, 929
AlwI GGATC 2 cut(s) 30, 983
ApeKI GCWGC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 203, 413, 768
AvaII GGWCC 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 583
BccI CCATC 2 cut(s) 180, 210
BciT130I CCWGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 434, 929
BfaI CTAG 5 cut(s) 348, 402, 800, 861, 932
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 2 cut(s) 251, 597
BlsI GCNGC 2 cut(s) 252, 598
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 582
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 4 cut(s) 252, 371, 490, 1006
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 785, 879
Bse1I ACTGG 2 cut(s) 24, 282
Bse21I CCTNAGG 1 cut(s) 903
Bse3DI GCAATG 1 cut(s) 685
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 785, 879
BseGI GGATG 5 cut(s) 112, 191, 313, 320, 442
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 2 cut(s) 812, 894
BseNI ACTGG 2 cut(s) 24, 282
BseXI GCAGC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 832
BslFI GGGAC 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 434, 929
BsmFI GGGAC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 5 cut(s) 22, 157, 628, 698, 975
BspACI CCGC 3 cut(s) 42, 250, 779
BspCNI CTCAG 2 cut(s) 813, 895
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 2 cut(s) 30, 983
BspTNI GGTCTC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 685
BsrI ACTGG 2 cut(s) 24, 282
BssECI CCNNGG 2 cut(s) 785, 879
BssMI GATC 5 cut(s) 22, 157, 628, 698, 975
BssT1I CCWWGG 2 cut(s) 785, 879
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 588
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 736
BstDEI CTNAG 2 cut(s) 821, 903
BstF5I GGATG 5 cut(s) 112, 191, 313, 320, 442
BstKTI GATC 5 cut(s) 25, 160, 631, 701, 978
BstMAI GTCTC 2 cut(s) 434, 929
BstMBI GATC 5 cut(s) 22, 157, 628, 698, 975
BstMWI GCNNNNNNNGC 4 cut(s) 55, 256, 509, 518
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 478, 528
BstSCI CCNGG 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 583
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 22, 975
BstYI RGATCY 2 cut(s) 22, 975
Bsu36I CCTNAGG 1 cut(s) 903
BtsCI GGATG 5 cut(s) 112, 191, 313, 320, 442
BtsIMutI CAGTG 4 cut(s) 17, 361, 593, 818
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 1 cut(s) 736
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 991
CviAII CATG 6 cut(s) 139, 254, 475, 525, 530, 641
CviQI GTAC 1 cut(s) 991
DdeI CTNAG 2 cut(s) 821, 903
DpnI GATC 5 cut(s) 24, 159, 630, 700, 977
DpnII GATC 5 cut(s) 22, 157, 628, 698, 975
Eco130I CCWWGG 2 cut(s) 785, 879
Eco31I GGTCTC 1 cut(s) 434
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 903
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 785, 879
EcoT22I ATGCAT 1 cut(s) 1021
ErhI CCWWGG 2 cut(s) 785, 879
FaeI CATG 6 cut(s) 142, 257, 478, 528, 533, 644
FalI AAGNNNNNCTT 6 cut(s) 83, 115, 449, 481, 657, 689
FaqI GGGAC 1 cut(s) 214
FatI CATG 6 cut(s) 138, 253, 474, 524, 529, 640
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 251, 597
FokI GGATG 5 cut(s) 119, 198, 320, 327, 449
Fsp4HI GCNGC 2 cut(s) 251, 597
FspBI CTAG 5 cut(s) 348, 402, 800, 861, 932
GluI GCNGC 2 cut(s) 251, 597
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 1 cut(s) 832
Hin1II CATG 6 cut(s) 142, 257, 478, 528, 533, 644
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 2 cut(s) 47, 169
HinfI GANTC 4 cut(s) 194, 227, 351, 620
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 1 cut(s) 832
HphI GGTGA 3 cut(s) 203, 413, 768
Hpy166II GTNNAC 4 cut(s) 79, 145, 329, 776
Hpy188I TCNGA 2 cut(s) 698, 1008
Hpy188III TCNNGA 3 cut(s) 12, 485, 689
Hpy8I GTNNAC 4 cut(s) 79, 145, 329, 776
HpyAV CCTTC 3 cut(s) 208, 953, 960
HpyCH4III ACNGT 1 cut(s) 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 256, 509, 518
HpyF3I CTNAG 2 cut(s) 821, 903
Hsp92II CATG 6 cut(s) 142, 257, 478, 528, 533, 644
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 5 cut(s) 22, 157, 628, 698, 975
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 4 cut(s) 252, 371, 490, 1006
MaeI CTAG 5 cut(s) 348, 402, 800, 861, 932
MaeIII GTNAC 4 cut(s) 163, 367, 795, 809
MalI GATC 5 cut(s) 24, 159, 630, 700, 977
MboI GATC 5 cut(s) 22, 157, 628, 698, 975
MboII GAAGA 3 cut(s) 125, 970, 988
MflI RGATCY 2 cut(s) 22, 975
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 342, 654
MlyI GAGTC 3 cut(s) 203, 236, 614
MnlI CCTC 3 cut(s) 103, 736, 898
Mph1103I ATGCAT 1 cut(s) 1021
MseI TTAA 2 cut(s) 144, 657
MslI CAYNNNNRTG 3 cut(s) 84, 214, 986
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 832
MspR9I CCNGG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 55, 256, 509, 518
NdeII GATC 5 cut(s) 22, 157, 628, 698, 975
NlaIII CATG 6 cut(s) 142, 257, 478, 528, 533, 644
NmuCI GTSAC 3 cut(s) 163, 795, 809
NsiI ATGCAT 1 cut(s) 1021
NspI RCATGY 2 cut(s) 478, 528
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 2 cut(s) 252, 598
PleI GAGTC 3 cut(s) 202, 235, 614
PpsI GAGTC 3 cut(s) 202, 235, 614
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 22, 975
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 992
RsaNI GTAC 1 cut(s) 991
RseI CAYNNNNRTG 3 cut(s) 84, 214, 986
SaqAI TTAA 2 cut(s) 144, 657
SatI GCNGC 2 cut(s) 251, 597
Sau3AI GATC 5 cut(s) 22, 157, 628, 698, 975
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 3 cut(s) 203, 236, 614
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 4 cut(s) 252, 371, 490, 1006
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 3 cut(s) 84, 214, 986
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 342, 654
SsiI CCGC 3 cut(s) 42, 250, 779
SspI AATATT 1 cut(s) 507
SspMI CTAG 5 cut(s) 348, 402, 800, 861, 932
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 2 cut(s) 785, 879
TaaI ACNGT 1 cut(s) 588
TaqI TCGA 2 cut(s) 568, 631
TasI AATT 2 cut(s) 342, 654
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 2 cut(s) 144, 657
Tru9I TTAA 2 cut(s) 144, 657
TscAI CASTG 4 cut(s) 24, 361, 593, 825
TseFI GTSAC 3 cut(s) 163, 795, 809
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 3 cut(s) 163, 795, 809
TspDTI ATGAA 4 cut(s) 192, 485, 657, 844
TspRI CASTG 4 cut(s) 24, 361, 593, 825
VpaK11BI GGWCC 1 cut(s) 329
XceI RCATGY 2 cut(s) 478, 528
XspI CTAG 5 cut(s) 348, 402, 800, 861, 932
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.