AT5G14105

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007875
Physical Location & Seq
Reverse (-)
4551864 .. 4553051
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14105.1

Sequence Viewer

Length: 231 bp
ATGGGTTTGACGAATTTCATATTGACGGTGGCCGGAGTAGGCGCCGTGGTGATGCTACTGAGGAGCGACGTGAAGCAATCTGTGACCGTCCTCAGGCGTAACGTCAAGCACATCCGCCACTGGCTCGAAGAAGAATCCTCCGCCGCCTCTTCCAAGGCAGCTGAGTCCATAAAACCAAAGGAAATAGAGGTAAAGGTTCCGAAGAAGGACATTCCAAAAGAGAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.44

Weight (kDa)

9.63

Isoelectric Point (pI)

68.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 3 cut(s) 115, 141, 144
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 93
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 92
BanI GGYRCC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 2 cut(s) 144, 159
BlsI GCNGC 2 cut(s) 145, 160
BmgBI CACGTC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 43, 198
BmsI GCATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 45, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 125
Bse21I CCTNAGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 45, 153
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 50, 106, 153
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 32
BspACI CCGC 3 cut(s) 115, 141, 144
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 3 cut(s) 51, 105, 154
BspLI GGNNCC 2 cut(s) 43, 198
BspT107I GGYRCC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 45, 153
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 28, 88
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 59, 92, 162
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 170
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 44
CviJI RGCY 3 cut(s) 32, 124, 161
CviKI_1 RGCY 3 cut(s) 32, 124, 161
DdeI CTNAG 3 cut(s) 59, 92, 162
DinI GGCGCC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 2 cut(s) 104, 130
Eco130I CCWWGG 1 cut(s) 153
Eco81I CCTNAGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 2 cut(s) 20, 170
Fnu4HI GCNGC 2 cut(s) 144, 159
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 144, 159
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 144, 159
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 32
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 134, 164
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 199, 217
HpyCH4III ACNGT 2 cut(s) 28, 88
HpyCH4IV ACGT 2 cut(s) 69, 102
HpyF3I CTNAG 3 cut(s) 59, 92, 162
HpySE526I ACGT 2 cut(s) 69, 102
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 46, 79, 106
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 42
MaeII ACGT 2 cut(s) 69, 102
MaeIII GTNAC 2 cut(s) 82, 98
MboII GAAGA 4 cut(s) 140, 141, 143, 214
MluCI AATT 1 cut(s) 13
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 5 cut(s) 54, 101, 148, 157, 181
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 33
NarI GGCGCC 1 cut(s) 42
NlaIV GGNNCC 2 cut(s) 43, 198
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 145, 160
PleI GAGTC 1 cut(s) 172
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 43, 198
PvuII CAGCTG 1 cut(s) 161
SatI GCNGC 2 cut(s) 144, 159
SchI GAGTC 1 cut(s) 173
SetI ASST 5 cut(s) 72, 105, 163, 192, 198
SfaNI GCATC 1 cut(s) 42
SfoI GGCGCC 1 cut(s) 43
SgeI CNNG 8 cut(s) 45, 58, 82, 106, 118, 133, 137, 166
Sse9I AATT 1 cut(s) 13
SsiI CCGC 3 cut(s) 115, 141, 144
SspDI GGCGCC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 28, 88
TaiI ACGT 2 cut(s) 72, 105
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 125
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.