Rh1DG367900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
59348401 .. 59350401
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG367900.1

Sequence Viewer

Length: 336 bp
ATGAATCTTCTCACTAATCAGTCTAGAATTGTTCATGAGGGTGTGTTTTATATTCATAATGTCAGCAGATTTAATTCAGTGAAGCAAAACTTTTTCTTCTTAGCTAGGTTTGGGAGAAGCACAAGAAATATGGCTTTGACAAACTTCATACTGACAGTGGCTGGTGTAAGTGCTGTAGTTCTTTTATTGAGGAGTGATGTGAAACAGTCAGCTACCATATTCAGGCGGAACGTCAAACATATCCGCAAGTGGCTTGAAGAAGAATCCAAGGCAGTCCCAAAGGAACTGGAAACAAAGGTTCCGCCGAAGGATGTTCCCAAGGAGGACAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.86

Weight (kDa)

10.38

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 226, 244, 302
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 2 cut(s) 104, 212
AluI AGCT 2 cut(s) 104, 212
AlwNI CAGNNNCTG 1 cut(s) 161
BfaI CTAG 3 cut(s) 24, 105, 334
BfmI CTRYAG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 267, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 267, 318
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 260
BspACI CCGC 3 cut(s) 226, 244, 302
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 267, 318
BssT1I CCWWGG 2 cut(s) 267, 318
Bst4CI ACNGT 2 cut(s) 157, 207
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 84, 162
CaiI CAGNNNCTG 1 cut(s) 161
CciI TCATGA 1 cut(s) 34
CviAII CATG 1 cut(s) 35
CviJI RGCY 5 cut(s) 104, 134, 161, 212, 253
CviKI_1 RGCY 5 cut(s) 104, 134, 161, 212, 253
DdeI CTNAG 1 cut(s) 100
EciI GGCGGA 2 cut(s) 241, 291
Eco130I CCWWGG 2 cut(s) 267, 318
EcoT14I CCWWGG 2 cut(s) 267, 318
ErhI CCWWGG 2 cut(s) 267, 318
FaeI CATG 1 cut(s) 38
FaiI YATR 7 cut(s) 36, 51, 57, 131, 149, 218, 240
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 34
FokI GGATG 1 cut(s) 323
FspBI CTAG 3 cut(s) 24, 105, 334
Hin1II CATG 1 cut(s) 38
HinfI GANTC 2 cut(s) 4, 263
Hpy188III TCNNGA 2 cut(s) 24, 35
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 157, 207
HpyCH4IV ACGT 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 38
LpnPI CCDG 3 cut(s) 147, 208, 272
MaeI CTAG 3 cut(s) 24, 105, 334
MaeII ACGT 1 cut(s) 231
MboII GAAGA 3 cut(s) 88, 269, 272
MluCI AATT 2 cut(s) 27, 73
MnlI CCTC 3 cut(s) 31, 183, 316
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 39
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 300
PagI TCATGA 1 cut(s) 34
PfeI GAWTC 2 cut(s) 4, 263
PspN4I GGNNCC 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 72
SetI ASST 5 cut(s) 106, 110, 214, 234, 300
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 2 cut(s) 27, 73
SsiI CCGC 3 cut(s) 226, 244, 302
SspMI CTAG 3 cut(s) 24, 105, 334
StyI CCWWGG 2 cut(s) 267, 318
TaaI ACNGT 2 cut(s) 157, 207
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 27, 73
TfiI GAWTC 2 cut(s) 4, 263
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 84, 162
TspDTI ATGAA 4 cut(s) 17, 23, 44, 136
TspRI CASTG 2 cut(s) 84, 162
XbaI TCTAGA 1 cut(s) 23
XspI CTAG 3 cut(s) 24, 105, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.