Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007875

Physical Location & Seq

Genomic Coordinates Forward (+)

25712753 .. 25715059

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1118400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCTTATTGGGTCCATGCAAATAACAAGACAACCCAAAACCCATATTTTAACTTGATCCGCAACCTTCGGTGCTCTCTCACTCGCAGAGATTCAGAATCCCTCTTCTCCGCCACCACCACCACATTTTCGCTCCGCCGTCTCAGTTTCCCGCGAAGCCACCCGCCAAGGAGCAGCCCCAAGTTTACCACTTCACCGTCCGAACTTCTCTTAGGTTTTGCAAGAAGCAGAAGAAGTATGGCTTTGACAAACTTCATACTGACAGTTGCTGGTGTAGGCGCGGTGGTTCTTATGCTGAGGAGTGATGTCAGGCAATCAGCTTCCATCTTCAAGCGCAATGTCAAACACATCCGCACCTGGCTTGAGGAAGAATCGCCCAAAATCACCAAGGAACTGGAATCAAAGGTTCCACCAAAGGATATTCCCAAGGACAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.77

Weight (kDa)

10.95

Isoelectric Point (pI)

80.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14105
fragaria_vesca	FvH4_5g10930
malus_domestica	MD06G1118400.v1.1 MD14G1126500.v1.1
prunus_persica	Prupe.2G009500_v2.0.a1 Prupe.5G129500_v2.0.a1
pyrus_communis	pycom14g11110
rosa_chinensis	RchiOBHm_Chr1g0371371 RchiOBHm_Chr7g0186891
rosa_multiflora	Rmu_sc0000809.1_g000035 Rmu_sc0027221.1_g000005
rosa_rugosa	Rorug01G0363400.1 Rorug06G0477900
rosa_samantha	Rh1AG373400 Rh1BG336900 Rh1CG350300 Rh1DG367900 Rh7AG083500 Rh7BG079300 Rh7CG084500 Rh7DG085400
rosa_wichuraiana	Rw1G032850 Rw6G016370 Rw7G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	154, 281
AciI	CCGC	7 cut(s)	61, 111, 136, 152, 164, 281, 352
AclWI	GGATC	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	281, 336
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	186, 376
AvaII	GGWCC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	439
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	14, 408
BmrFI	CCNGG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	167, 387, 426
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	167, 387, 426
BseGI	GGATG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	157, 287
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	186
Bsh1236I	CGCG	2 cut(s)	154, 281
BsiHKAI	GWGCWC	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	7 cut(s)	61, 111, 136, 152, 164, 281, 352
BspCNI	CTCAG	2 cut(s)	156, 288
BspFNI	CGCG	2 cut(s)	154, 281
BspLI	GGNNCC	2 cut(s)	14, 408
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	167, 387, 426
BssMI	GATC	1 cut(s)	57
BssT1I	CCWWGG	3 cut(s)	167, 387, 426
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	198, 265
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	143, 211, 296
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	154, 281
BstHHI	GCGC	2 cut(s)	281, 336
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstUI	CGCG	2 cut(s)	154, 281
BstV1I	GCAGC	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	281, 336
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	5 cut(s)	159, 177, 242, 320, 361
CviKI_1	RGCY	5 cut(s)	159, 177, 242, 320, 361
DdeI	CTNAG	3 cut(s)	143, 211, 296
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	2 cut(s)	100, 125
Eco130I	CCWWGG	3 cut(s)	167, 387, 426
Eco47I	GGWCC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	3 cut(s)	167, 387, 426
ErhI	CCWWGG	3 cut(s)	167, 387, 426
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	20
FaiI	YATR	5 cut(s)	18, 46, 239, 257, 293
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	1 cut(s)	16
FauI	CCCGC	2 cut(s)	159, 171
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	2 cut(s)	280, 335
GluI	GCNGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	281, 336
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	279, 334
HinP1I	GCGC	2 cut(s)	279, 334
HinfI	GANTC	4 cut(s)	92, 98, 371, 398
HphI	GGTGA	2 cut(s)	186, 376
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	97, 202
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	198, 265
HpyCH4V	TGCA	2 cut(s)	20, 221
HpyF3I	CTNAG	3 cut(s)	143, 211, 296
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	279, 334
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	138, 171
LpnPI	CCDG	5 cut(s)	255, 295, 343, 370, 380
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	439
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	4 cut(s)	97, 243, 319, 380
MhlI	GDGCHC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	113, 291, 358
MseI	TTAA	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	2 cut(s)	154, 281
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	14, 408
PfeI	GAWTC	4 cut(s)	92, 98, 371, 398
PkrI	GCNGC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	14, 408
PspPI	GGNCC	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	5 cut(s)	69, 217, 322, 359, 408
SinI	GGWCC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	7 cut(s)	61, 111, 136, 152, 164, 281, 352
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	3 cut(s)	167, 387, 426
TaaI	ACNGT	2 cut(s)	198, 265
TfiI	GAWTC	4 cut(s)	92, 98, 371, 398
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	13
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.