AT5G15190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013201
Physical Location & Seq
Reverse (-)
4932708 .. 4933620
913 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15190.2

Sequence Viewer

Length: 351 bp
ATGATGACGATGGGTGGAAGAGAAGCTGAATCGTGGCCGGAGATGGAAGCGATAGCTAGGAAGATGGTTGAGGAAGTTGAAACAGAGAGTAGCGGATCATCGGAAGCTGAGACAGAGTCTCCGAGATCCGTCGGACGTTGGATCACGGCTAAAGAGAAAGTACATAACCAGGTATTGAAGATTAGGGAAGAGGATCTCTGTGTTCTTGTTGAAGACAAAGTGACGAATCCAGAGGATCGACGATATCTTCGTCCACGTCGTTTTAATCTGTTCCTGATCTCGCGTCAGAATTTGCCTTGTTCGCCACTTAGTGGAAAAGGGAGATCCGTTAACGTTGTTCAGACTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.28

Weight (kDa)

5.93

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 93
AclI AACGTT 1 cut(s) 333
AclWI GGATC 6 cut(s) 103, 120, 149, 201, 243, 318
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 3 cut(s) 80, 178, 212
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 26, 56, 107
AluI AGCT 3 cut(s) 26, 56, 107
Alw26I GTCTC 2 cut(s) 104, 123
AlwI GGATC 6 cut(s) 103, 120, 149, 201, 243, 318
AoxI GGCC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 3 cut(s) 4, 37, 58
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 104, 123
BfaI CTAG 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 2 cut(s) 104, 123
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 283
BspPI GGATC 6 cut(s) 103, 120, 149, 201, 243, 318
BssMI GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 13, 183
BstDEI CTNAG 3 cut(s) 108, 308, 345
BstFNI CGCG 1 cut(s) 283
BstKTI GATC 7 cut(s) 98, 128, 144, 196, 238, 279, 326
BstMAI GTCTC 2 cut(s) 104, 123
BstMBI GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 125, 193, 323
BstYI RGATCY 3 cut(s) 125, 193, 323
BsuRI GGCC 1 cut(s) 37
BtrI CACGTC 1 cut(s) 257
CseI GACGC 1 cut(s) 272
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 161
CviJI RGCY 5 cut(s) 26, 37, 56, 107, 149
CviKI_1 RGCY 5 cut(s) 26, 37, 56, 107, 149
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 3 cut(s) 108, 308, 345
DpnI GATC 7 cut(s) 97, 127, 143, 195, 237, 278, 325
DpnII GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
DraIII CACNNNGTG 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 13, 183
EarI CTCTTC 2 cut(s) 13, 183
Eco32I GATATC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 1 cut(s) 245
FaiI YATR 1 cut(s) 165
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 4 cut(s) 29, 116, 226, 343
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 254, 331
Hpy188I TCNGA 5 cut(s) 103, 123, 134, 288, 342
Hpy188III TCNNGA 2 cut(s) 230, 274
Hpy8I GTNNAC 2 cut(s) 254, 331
Hpy99I CGWCG 3 cut(s) 134, 243, 261
HpyCH4IV ACGT 3 cut(s) 136, 256, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 3 cut(s) 108, 308, 345
HpySE526I ACGT 3 cut(s) 136, 256, 333
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
LpnPI CCDG 5 cut(s) 51, 155, 182, 243, 287
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 1 cut(s) 57
MaeII ACGT 3 cut(s) 136, 256, 333
MaeIII GTNAC 1 cut(s) 220
MalI GATC 7 cut(s) 97, 127, 143, 195, 237, 278, 325
MboI GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
MboII GAAGA 6 cut(s) 30, 73, 190, 200, 224, 239
MflI RGATCY 3 cut(s) 125, 193, 323
MluCI AATT 1 cut(s) 289
MlyI GAGTC 2 cut(s) 125, 337
MmeI TCCRAC 2 cut(s) 112, 119
MnlI CCTC 3 cut(s) 64, 184, 226
MseI TTAA 2 cut(s) 264, 330
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
NmuCI GTSAC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 2 cut(s) 247, 256
PfeI GAWTC 2 cut(s) 29, 226
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 2 cut(s) 124, 337
PpsI GAGTC 2 cut(s) 124, 337
Psp1406I AACGTT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PsuI RGATCY 3 cut(s) 125, 193, 323
PsyI GACNNNGTC 1 cut(s) 115
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 264, 330
Sau3AI GATC 7 cut(s) 95, 125, 141, 193, 235, 276, 323
SchI GAGTC 2 cut(s) 125, 337
ScrFI CCNGG 1 cut(s) 170
SetI ASST 7 cut(s) 28, 58, 109, 139, 174, 259, 336
SexAI ACCWGGT 1 cut(s) 168
Sse9I AATT 1 cut(s) 289
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 168
TaiI ACGT 3 cut(s) 139, 259, 336
TaqI TCGA 1 cut(s) 238
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 160
TfiI GAWTC 2 cut(s) 29, 226
Tru1I TTAA 2 cut(s) 264, 330
Tru9I TTAA 2 cut(s) 264, 330
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 2 cut(s) 118, 316
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 311
XapI RAATTY 1 cut(s) 289
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.