FvH4_6g48930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013201
Physical Location & Seq
Forward (+)
36736169 .. 36737933
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48930.t2

Sequence Viewer

Length: 336 bp
ATGATCGCAGTGAGGCCCAAGCACGAGGAAATGGAGGTCCGATTCGCGGCGAAGCCGTACAGCACCGACGACGACAGCGCCGGGTCGTCGGAGGAGATGGACTCGCCGAGGTCGGTGCAGGGGCGGTGGAGGAGGTCGGCGTTGAAGAAGGTGGCGTATGTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCACCTCGGCGAGAGCAGCGCGTTTGGCGCCAAAGAGAAGGTGGCGCACGCGGTGGCGTCGCGCGTCGACGTTGTGCTTTTGGCCCGCCCGGTCTTGCCTTGCTCGCCGCTCAGAAACACCGTCAACGCTTTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.33

Weight (kDa)

8.89

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 264
AccII CGCG 5 cut(s) 47, 218, 248, 259, 261
AciI CCGC 5 cut(s) 47, 124, 248, 283, 305
AclWI GGATC 1 cut(s) 188
AcyI GRCGYC 2 cut(s) 225, 254
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 145
Alw21I GWGCWC 1 cut(s) 165
Alw44I GTGCAC 1 cut(s) 161
AlwI GGATC 1 cut(s) 188
AoxI GGCC 2 cut(s) 14, 279
ApaLI GTGCAC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 213
AspLEI GCGC 5 cut(s) 80, 218, 227, 244, 261
AspS9I GGNCC 3 cut(s) 15, 37, 280
AsuC2I CCSGG 2 cut(s) 82, 287
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BcnI CCSGG 2 cut(s) 82, 287
BfoI RGCGCY 2 cut(s) 81, 228
BglII AGATCT 1 cut(s) 171
BisI GCNGC 3 cut(s) 48, 214, 305
BlsI GCNGC 3 cut(s) 49, 215, 306
Bme1390I CCNGG 2 cut(s) 82, 287
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 3 cut(s) 15, 37, 280
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 82, 287
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 179, 211
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 82, 287
BsaHI GRCGYC 2 cut(s) 225, 254
BsaJI CCNNGG 2 cut(s) 107, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 107, 202
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 322
BseRI GAGGAG 3 cut(s) 107, 145, 203
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 137
Bsh1236I CGCG 5 cut(s) 47, 218, 248, 259, 261
BshFI GGCC 2 cut(s) 16, 281
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 2 cut(s) 81, 287
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 2 cut(s) 16, 281
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 3 cut(s) 3, 171, 180
BspACI CCGC 5 cut(s) 47, 124, 248, 283, 305
BspANI GGCC 2 cut(s) 16, 281
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 5 cut(s) 47, 218, 248, 259, 261
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 107, 202
BssMI GATC 3 cut(s) 3, 171, 180
BssNI GRCGYC 2 cut(s) 225, 254
BssSI CACGAG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 319
BstACI GRCGYC 2 cut(s) 225, 254
BstC8I GCNNGC 3 cut(s) 246, 283, 302
BstDEI CTNAG 1 cut(s) 308
BstFNI CGCG 5 cut(s) 47, 218, 248, 259, 261
BstH2I RGCGCY 2 cut(s) 81, 228
BstHHI GCGC 5 cut(s) 80, 218, 227, 244, 261
BstKTI GATC 3 cut(s) 6, 174, 183
BstMBI GATC 3 cut(s) 3, 171, 180
BstMWI GCNNNNNNNGC 4 cut(s) 213, 222, 224, 301
BstSCI CCNGG 2 cut(s) 80, 285
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 5 cut(s) 47, 218, 248, 259, 261
BstV1I GCAGC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 2 cut(s) 16, 281
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 331
Cac8I GCNNGC 3 cut(s) 246, 283, 302
CfoI GCGC 5 cut(s) 80, 218, 227, 244, 261
Cfr13I GGNCC 3 cut(s) 15, 37, 280
CseI GACGC 2 cut(s) 243, 250
Csp6I GTAC 1 cut(s) 58
CviJI RGCY 4 cut(s) 16, 55, 168, 281
CviKI_1 RGCY 4 cut(s) 16, 55, 168, 281
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 308
DinI GGCGCC 1 cut(s) 226
DpnI GATC 3 cut(s) 5, 173, 182
DpnII GATC 3 cut(s) 3, 171, 180
DraIII CACNNNGTG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 37
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaiI YATR 1 cut(s) 159
FauI CCCGC 1 cut(s) 290
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 48, 214, 305
Fsp4HI GCNGC 3 cut(s) 48, 214, 305
GlaI GCGC 5 cut(s) 79, 217, 226, 243, 260
GluI GCNGC 3 cut(s) 48, 214, 305
HaeII RGCGCY 2 cut(s) 81, 228
HaeIII GGCC 2 cut(s) 16, 281
HapII CCGG 2 cut(s) 81, 287
HgaI GACGC 2 cut(s) 243, 250
HhaI GCGC 5 cut(s) 80, 218, 227, 244, 261
Hin1I GRCGYC 2 cut(s) 225, 254
Hin6I GCGC 5 cut(s) 78, 216, 225, 242, 259
HinP1I GCGC 5 cut(s) 78, 216, 225, 242, 259
HincII GTYRAC 2 cut(s) 265, 322
HindII GTYRAC 2 cut(s) 265, 322
HinfI GANTC 3 cut(s) 42, 101, 194
HpaII CCGG 2 cut(s) 81, 287
Hpy166II GTNNAC 3 cut(s) 163, 265, 322
Hpy188I TCNGA 4 cut(s) 41, 91, 185, 311
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 163, 265, 322
Hpy99I CGWCG 6 cut(s) 71, 74, 91, 259, 266, 269
HpyAV CCTTC 2 cut(s) 142, 229
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 118, 163, 331
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 222, 224, 301
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 2 cut(s) 225, 254
HspAI GCGC 5 cut(s) 78, 216, 225, 242, 259
KasI GGCGCC 1 cut(s) 224
Kzo9I GATC 3 cut(s) 3, 171, 180
LpnPI CCDG 4 cut(s) 94, 104, 182, 300
Lsp1109I GCAGC 1 cut(s) 225
MaeII ACGT 1 cut(s) 267
MalI GATC 3 cut(s) 5, 173, 182
MbiI CCGCTC 1 cut(s) 307
MboI GATC 3 cut(s) 3, 171, 180
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 2 cut(s) 95, 188
MmeI TCCRAC 1 cut(s) 69
MspI CCGG 2 cut(s) 81, 287
MspR9I CCNGG 2 cut(s) 82, 287
MvnI CGCG 5 cut(s) 47, 218, 248, 259, 261
MwoI GCNNNNNNNGC 4 cut(s) 213, 222, 224, 301
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 2 cut(s) 82, 287
NdeII GATC 3 cut(s) 3, 171, 180
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 2 cut(s) 132, 183
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 49, 215, 306
PleI GAGTC 2 cut(s) 95, 188
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 2 cut(s) 95, 188
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 3 cut(s) 15, 37, 280
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SalI GTCGAC 1 cut(s) 263
SatI GCNGC 3 cut(s) 48, 214, 305
Sau3AI GATC 3 cut(s) 3, 171, 180
Sau96I GGNCC 3 cut(s) 15, 37, 280
SchI GAGTC 2 cut(s) 95, 188
ScrFI CCNGG 2 cut(s) 82, 287
SduI GDGCHC 1 cut(s) 165
SetI ASST 7 cut(s) 39, 113, 137, 153, 204, 240, 270
SfoI GGCGCC 1 cut(s) 226
SgrDI CGTCGACG 1 cut(s) 263
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
SsiI CCGC 5 cut(s) 47, 124, 248, 283, 305
SspDI GGCGCC 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 80, 285
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 264
TauI GCSGC 2 cut(s) 50, 307
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 213
TspRI CASTG 1 cut(s) 15
VneI GTGCAC 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.