Prupe.3G269200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013201
Physical Location & Seq
Forward (+)
25102485 .. 25104063
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G269200.1

Sequence Viewer

Length: 393 bp
ATGATGACACTGCGCCCAAACCAGAAGGAGAACGACGACCATCGGGAGATGATGGAGGAGGTTCAGCGGAGCTTGCTTTTCGTGTCGAAGCCCAAGGCGTGTACGGAGCAGGAGGAGATGGAGCAGGACAGCGGGGGATCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTTGGGCGATGGAGGCGGAGGGCGAAGAGGGCGGGCTGCGTGCATAGCCAGATCTTGAGAATTAGGGAGGAGGACGCGCATCTCGGCGAGAGTACCAGTTTCGGCTCCAAAGATAATCATCATAAGGTTGCTCATGCCGTGGCTTCCGGCATGGACGTTGTGCTCTTCGCCCGGCCCATCTTGCCTTGCTCGCCCCTCAAGAACTCCGTCAACGCTTACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.76

Weight (kDa)

6.65

Isoelectric Point (pI)

79.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 245
AciI CCGC 4 cut(s) 67, 132, 184, 200
AclWI GGATC 1 cut(s) 145
AfaI GTAC 2 cut(s) 103, 262
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 15, 247
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 191
BccI CCATC 6 cut(s) 46, 48, 112, 145, 171, 353
BceAI ACGGC 1 cut(s) 290
BcnI CCSGG 1 cut(s) 340
BglII AGATCT 1 cut(s) 219
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 256
BpuEI CTTGAG 2 cut(s) 244, 350
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 93, 161, 306
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 93, 161, 306
BseJI GATNNNNATC 1 cut(s) 285
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 4 cut(s) 71, 128, 161, 251
BseXI GCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 315, 340
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 137, 219
BspACI CCGC 4 cut(s) 67, 132, 184, 200
BspANI GGCC 1 cut(s) 343
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 93, 161, 306
BssMI GATC 2 cut(s) 137, 219
BssT1I CCWWGG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 188, 338
BstC8I GCNNGC 4 cut(s) 74, 202, 209, 359
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 2 cut(s) 15, 247
BstKTI GATC 2 cut(s) 140, 222
BstMBI GATC 2 cut(s) 137, 219
BstMWI GCNNNNNNNGC 6 cut(s) 73, 181, 197, 213, 349, 358
BstSCI CCNGG 1 cut(s) 338
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 4 cut(s) 74, 202, 209, 359
CfoI GCGC 2 cut(s) 15, 247
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 102, 261
CviAII CATG 2 cut(s) 302, 319
CviJI RGCY 7 cut(s) 72, 91, 204, 216, 273, 311, 343
CviKI_1 RGCY 7 cut(s) 72, 91, 204, 216, 273, 311, 343
CviQI GTAC 2 cut(s) 102, 261
DpnI GATC 2 cut(s) 139, 221
DpnII GATC 2 cut(s) 137, 219
Eam1104I CTCTTC 2 cut(s) 188, 338
EarI CTCTTC 2 cut(s) 188, 338
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 305, 322
FaiI YATR 4 cut(s) 213, 291, 303, 320
FatI CATG 2 cut(s) 301, 318
FauI CCCGC 2 cut(s) 125, 193
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
GlaI GCGC 2 cut(s) 14, 246
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 343
HapII CCGG 2 cut(s) 315, 340
HgaI GACGC 1 cut(s) 251
HhaI GCGC 2 cut(s) 15, 247
Hin1II CATG 2 cut(s) 305, 322
Hin6I GCGC 2 cut(s) 13, 245
HinP1I GCGC 2 cut(s) 13, 245
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 1 cut(s) 155
HpaII CCGG 2 cut(s) 315, 340
Hpy166II GTNNAC 2 cut(s) 102, 379
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 44, 223, 367
Hpy8I GTNNAC 2 cut(s) 102, 379
Hpy99I CGWCG 2 cut(s) 38, 145
HpyAV CCTTC 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 181, 197, 213, 349, 358
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 305, 322
HspAI GCGC 2 cut(s) 13, 245
Kzo9I GATC 2 cut(s) 137, 219
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 4 cut(s) 69, 106, 121, 278
LpnPI CCDG 7 cut(s) 35, 95, 110, 230, 277, 328, 353
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 324
MalI GATC 2 cut(s) 139, 221
MboI GATC 2 cut(s) 137, 219
MboII GAAGA 2 cut(s) 205, 325
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 123
MspA1I CMGCKG 2 cut(s) 67, 132
MspI CCGG 2 cut(s) 315, 340
MspR9I CCNGG 1 cut(s) 340
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 6 cut(s) 73, 181, 197, 213, 349, 358
NciI CCSGG 1 cut(s) 340
NdeII GATC 2 cut(s) 137, 219
NlaIII CATG 2 cut(s) 305, 322
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 2 cut(s) 186, 231
PciSI GCTCTTC 1 cut(s) 338
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 2 cut(s) 103, 262
RsaNI GTAC 2 cut(s) 102, 261
SapI GCTCTTC 1 cut(s) 338
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 137, 219
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 333
SetI ASST 5 cut(s) 63, 74, 167, 297, 327
SfaNI GCATC 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 223, 365
SmoI CTYRAG 2 cut(s) 223, 365
Sse9I AATT 1 cut(s) 228
SsiI CCGC 4 cut(s) 67, 132, 184, 200
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 228
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 204
TspGWI ACGGA 2 cut(s) 119, 364
TspRI CASTG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.