Rh2CG587000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013201
Physical Location & Seq
Forward (+)
76458070 .. 76459192
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG587000.1

Sequence Viewer

Length: 312 bp
ATGATCACAGTGAGACCCAAGCAGGAGGAAATGGAGGTCCGATTCGCGACGAAGCCGAAGCCGAAGCCGAAGGCGGCGGCGGCGGCGTTGGTGGCTTACGGCACCGACGACGACAGTGCCGGGTCGTCGGAGGAGATGGAGTCGCCGAGCTCGGCGAGAGCTACTTTGGCGCGAAAGAGAAGGCCGCTCACGCCGTGGCTTCGCGCGTCGACGTTGTGCTTTTGGCCCGGCCGGTCTTGCCTTCCTCGCCGCTCAAGAACACCGTCAACGCTTTGCACTGAGCGCTCTGCTTATTCTGGTATAATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.35

Weight (kDa)

10.03

Isoelectric Point (pI)

84.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 2 cut(s) 187, 252
AccI GTMKAC 1 cut(s) 209
AccII CGCG 4 cut(s) 47, 172, 204, 206
AciI CCGC 6 cut(s) 74, 77, 80, 83, 185, 250
AcoI YGGCCR 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 284
AluBI AGCT 3 cut(s) 150, 161, 309
AluI AGCT 3 cut(s) 150, 161, 309
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 7
Aor51HI AGCGCT 1 cut(s) 284
AoxI GGCC 3 cut(s) 182, 224, 229
AspLEI GCGC 3 cut(s) 172, 206, 285
AspS9I GGNCC 2 cut(s) 37, 225
AsuC2I CCSGG 2 cut(s) 121, 228
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BccI CCATC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 115, 178
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 121, 228
BcoDI GTCTC 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 286
BisI GCNGC 6 cut(s) 75, 78, 81, 84, 185, 250
BlsI GCNGC 6 cut(s) 76, 79, 82, 85, 186, 251
Bme1390I CCNGG 2 cut(s) 121, 228
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 225
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 121, 228
BpuEI CTTGAG 1 cut(s) 238
BpuMI CCSGG 2 cut(s) 121, 228
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse118I RCCGGY 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 229
Bsh1236I CGCG 4 cut(s) 47, 172, 204, 206
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 184, 226, 231
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 120, 228, 232
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 3 cut(s) 184, 226, 231
Bso31I GGTCTC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 3
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 6 cut(s) 74, 77, 80, 83, 185, 250
BspANI GGCC 3 cut(s) 184, 226, 231
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 4 cut(s) 47, 172, 204, 206
BspLI GGNNCC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 7
BsrBI CCGCTC 2 cut(s) 187, 252
BsrFI RCCGGY 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 3 cut(s) 10, 116, 264
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 194
BstFNI CGCG 4 cut(s) 47, 172, 204, 206
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 3 cut(s) 172, 206, 285
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 8 cut(s) 80, 83, 92, 167, 190, 237, 246, 282
BstSCI CCNGG 2 cut(s) 119, 226
BstUI CGCG 4 cut(s) 47, 172, 204, 206
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 184, 226, 231
BtgI CCRYGG 1 cut(s) 194
BtsIMutI CAGTG 3 cut(s) 15, 121, 276
BtuMI TCGCGA 1 cut(s) 47
CfoI GCGC 3 cut(s) 172, 206, 285
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 37, 225
CseI GACGC 1 cut(s) 195
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 284
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 152
FaiI YATR 1 cut(s) 302
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 6 cut(s) 75, 78, 81, 84, 185, 250
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 6 cut(s) 75, 78, 81, 84, 185, 250
GlaI GCGC 3 cut(s) 171, 205, 284
GluI GCNGC 6 cut(s) 75, 78, 81, 84, 185, 250
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 3 cut(s) 184, 226, 231
HapII CCGG 3 cut(s) 120, 228, 232
HgaI GACGC 1 cut(s) 195
HhaI GCGC 3 cut(s) 172, 206, 285
Hin6I GCGC 3 cut(s) 170, 204, 283
HinP1I GCGC 3 cut(s) 170, 204, 283
HincII GTYRAC 2 cut(s) 210, 267
HindII GTYRAC 2 cut(s) 210, 267
HinfI GANTC 2 cut(s) 42, 140
HpaII CCGG 3 cut(s) 120, 228, 232
Hpy166II GTNNAC 2 cut(s) 210, 267
Hpy188I TCNGA 2 cut(s) 41, 130
Hpy188III TCNNGA 2 cut(s) 46, 255
Hpy8I GTNNAC 2 cut(s) 210, 267
Hpy99I CGWCG 6 cut(s) 52, 110, 113, 130, 211, 214
HpyAV CCTTC 3 cut(s) 64, 174, 251
HpyCH4III ACNGT 3 cut(s) 10, 116, 264
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 83, 92, 167, 190, 237, 246, 282
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 212
HspAI GCGC 3 cut(s) 170, 204, 283
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 5 cut(s) 8, 133, 241, 245, 282
MaeII ACGT 1 cut(s) 212
MalI GATC 1 cut(s) 5
MbiI CCGCTC 2 cut(s) 187, 252
MboI GATC 1 cut(s) 3
MhlI GDGCHC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 4 cut(s) 19, 28, 124, 255
MspI CCGG 3 cut(s) 120, 228, 232
MspR9I CCNGG 2 cut(s) 121, 228
MvnI CGCG 4 cut(s) 47, 172, 204, 206
MwoI GCNNNNNNNGC 8 cut(s) 80, 83, 92, 167, 190, 237, 246, 282
NciI CCSGG 2 cut(s) 121, 228
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 2 cut(s) 131, 171
NruI TCGCGA 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 6 cut(s) 76, 79, 82, 85, 186, 251
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 37, 225
RruI TCGCGA 1 cut(s) 47
SacI GAGCTC 1 cut(s) 152
SalI GTCGAC 1 cut(s) 208
SatI GCNGC 6 cut(s) 75, 78, 81, 84, 185, 250
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 2 cut(s) 37, 225
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 121, 228
SduI GDGCHC 1 cut(s) 152
SetI ASST 5 cut(s) 39, 152, 163, 215, 311
SgrDI CGTCGACG 1 cut(s) 208
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SsiI CCGC 6 cut(s) 74, 77, 80, 83, 185, 250
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 2 cut(s) 119, 226
TaaI ACNGT 3 cut(s) 10, 116, 264
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 209
TauI GCSGC 6 cut(s) 77, 80, 83, 86, 187, 252
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 3 cut(s) 15, 121, 283
TspRI CASTG 3 cut(s) 15, 121, 283
VpaK11BI GGWCC 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.