RchiOBHm_Chr2g0168741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013201
Physical Location & Seq
Forward (+)
83110842 .. 83112429
1588 bp
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UTR
Exon/CDS
Intron
PRQ53637

Sequence Viewer

Length: 387 bp
ATGATCACAGTGAGACCCAAGCAGGAGGAAATGGAGGTCCGATTCGCGACGAAGCTGAAGCCGAAGCCGAAGGCGGCGGCGGCGGCGTTGGTGGCTTACGGCACCGACGACGATAGTGCCGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTGCAGGGGAGATGGAGGAGGAGGAGGTCGTCGTCGGAGAATAAGAAGAAGGCGGCGTACGTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCAGCTCGGCGAGAGCTACTTTGGCGCGAAAGAGAAGGCCGCTCACTCCGTGGCTTCGCGCGTCGACGTTGTGCTTTTGGCCCGGTCGGTCTTGCCTTCCTCGCCGCTCAAGAACACCGTCAACGCTTTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.18

Weight (kDa)

9.86

Isoelectric Point (pI)

77.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 2 cut(s) 293, 358
AccI GTMKAC 1 cut(s) 315
AccII CGCG 4 cut(s) 47, 278, 310, 312
AciI CCGC 7 cut(s) 74, 77, 80, 83, 206, 291, 356
AclWI GGATC 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 1 cut(s) 212
AluBI AGCT 3 cut(s) 55, 256, 267
AluI AGCT 3 cut(s) 55, 256, 267
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 7
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 1 cut(s) 242
AoxI GGCC 2 cut(s) 288, 330
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 253
AspLEI GCGC 2 cut(s) 278, 312
AspS9I GGNCC 2 cut(s) 37, 331
AsuC2I CCSGG 2 cut(s) 121, 334
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 101
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 130, 159
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 4 cut(s) 98, 132, 136, 170
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 121, 334
BcoDI GTCTC 1 cut(s) 7
BglII AGATCT 1 cut(s) 225
BisI GCNGC 8 cut(s) 75, 78, 81, 84, 207, 254, 291, 356
BlsI GCNGC 8 cut(s) 76, 79, 82, 85, 208, 255, 292, 357
Bme1390I CCNGG 2 cut(s) 121, 334
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 331
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 121, 334
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpuEI CTTGAG 2 cut(s) 250, 344
BpuMI CCSGG 2 cut(s) 121, 334
BsaAI YACGTR 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 146, 300
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
BseDI CCNNGG 2 cut(s) 146, 300
BseRI GAGGAG 5 cut(s) 146, 184, 187, 190, 257
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 4 cut(s) 47, 278, 310, 312
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 2 cut(s) 290, 332
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 120, 334
BsiWI CGTACG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 2 cut(s) 290, 332
Bso31I GGTCTC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 3, 225, 234
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 7 cut(s) 74, 77, 80, 83, 206, 291, 356
BspANI GGCC 2 cut(s) 290, 332
BspFNI CGCG 4 cut(s) 47, 278, 310, 312
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 7
BsrBI CCGCTC 2 cut(s) 293, 358
BssECI CCNNGG 2 cut(s) 146, 300
BssMI GATC 3 cut(s) 3, 225, 234
Bst4CI ACNGT 2 cut(s) 10, 370
BstBAI YACGTR 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 300
BstFNI CGCG 4 cut(s) 47, 278, 310, 312
BstHHI GCGC 2 cut(s) 278, 312
BstKTI GATC 3 cut(s) 6, 228, 237
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 3 cut(s) 3, 225, 234
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 5 cut(s) 80, 83, 92, 273, 352
BstSCI CCNGG 2 cut(s) 119, 332
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 4 cut(s) 47, 278, 310, 312
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 2 cut(s) 290, 332
BtgI CCRYGG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 15, 382
BtuMI TCGCGA 1 cut(s) 47
CfoI GCGC 2 cut(s) 278, 312
Cfr13I GGNCC 2 cut(s) 37, 331
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 211
CviQI GTAC 1 cut(s) 211
DpnI GATC 3 cut(s) 5, 227, 236
DpnII GATC 3 cut(s) 3, 225, 234
DraIII CACNNNGTG 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 77
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 8 cut(s) 75, 78, 81, 84, 207, 254, 291, 356
Fsp4HI GCNGC 8 cut(s) 75, 78, 81, 84, 207, 254, 291, 356
GlaI GCGC 2 cut(s) 277, 311
GluI GCNGC 8 cut(s) 75, 78, 81, 84, 207, 254, 291, 356
HaeIII GGCC 2 cut(s) 290, 332
HapII CCGG 2 cut(s) 120, 334
HgaI GACGC 1 cut(s) 301
HhaI GCGC 2 cut(s) 278, 312
Hin6I GCGC 2 cut(s) 276, 310
HinP1I GCGC 2 cut(s) 276, 310
HincII GTYRAC 2 cut(s) 316, 373
HindII GTYRAC 2 cut(s) 316, 373
HinfI GANTC 3 cut(s) 42, 140, 248
HpaII CCGG 2 cut(s) 120, 334
Hpy166II GTNNAC 3 cut(s) 217, 316, 373
Hpy188I TCNGA 4 cut(s) 41, 130, 190, 239
Hpy188III TCNNGA 3 cut(s) 46, 229, 361
Hpy8I GTNNAC 3 cut(s) 217, 316, 373
Hpy99I CGWCG 8 cut(s) 52, 110, 113, 130, 187, 190, 317, 320
HpyAV CCTTC 4 cut(s) 64, 196, 280, 357
HpyCH4III ACNGT 2 cut(s) 10, 370
HpyCH4IV ACGT 2 cut(s) 213, 318
HpyCH4V TGCA 3 cut(s) 157, 217, 382
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 83, 92, 273, 352
HpySE526I ACGT 2 cut(s) 213, 318
HspAI GCGC 2 cut(s) 276, 310
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 225, 234
LpnPI CCDG 5 cut(s) 8, 133, 143, 236, 347
Lsp1109I GCAGC 1 cut(s) 265
MaeII ACGT 2 cut(s) 213, 318
MalI GATC 3 cut(s) 5, 227, 236
MbiI CCGCTC 2 cut(s) 293, 358
MboI GATC 3 cut(s) 3, 225, 234
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 219
MlyI GAGTC 2 cut(s) 149, 242
MmeI TCCRAC 2 cut(s) 108, 168
MspI CCGG 2 cut(s) 120, 334
MspR9I CCNGG 2 cut(s) 121, 334
MvnI CGCG 4 cut(s) 47, 278, 310, 312
MwoI GCNNNNNNNGC 5 cut(s) 80, 83, 92, 273, 352
NciI CCSGG 2 cut(s) 121, 334
NdeII GATC 3 cut(s) 3, 225, 234
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 2 cut(s) 171, 237
NruI TCGCGA 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 42
Pfl23II CGTACG 1 cut(s) 210
PkrI GCNGC 8 cut(s) 76, 79, 82, 85, 208, 255, 292, 357
PleI GAGTC 2 cut(s) 148, 242
PpsI GAGTC 2 cut(s) 148, 242
Ppu21I YACGTR 1 cut(s) 214
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 37, 331
PsuI RGATCY 1 cut(s) 225
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SalI GTCGAC 1 cut(s) 314
SatI GCNGC 8 cut(s) 75, 78, 81, 84, 207, 254, 291, 356
Sau3AI GATC 3 cut(s) 3, 225, 234
Sau96I GGNCC 2 cut(s) 37, 331
SchI GAGTC 2 cut(s) 149, 242
ScrFI CCNGG 2 cut(s) 121, 334
SduI GDGCHC 1 cut(s) 219
SetI ASST 8 cut(s) 39, 57, 152, 182, 216, 258, 269, 321
SgrDI CGTCGACG 1 cut(s) 314
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 229, 359
SmoI CTYRAG 2 cut(s) 229, 359
SsiI CCGC 7 cut(s) 74, 77, 80, 83, 206, 291, 356
StyD4I CCNGG 2 cut(s) 119, 332
TaaI ACNGT 2 cut(s) 10, 370
TaiI ACGT 2 cut(s) 216, 321
TaqI TCGA 1 cut(s) 315
TaqII GACCGA 1 cut(s) 328
TauI GCSGC 7 cut(s) 77, 80, 83, 86, 209, 293, 358
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 15
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.