RLG00000021806

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013201
Physical Location & Seq
Forward (+)
78429461 .. 78429814
354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021806

Sequence Viewer

Length: 354 bp
ATGGAGGCCCGATTCGCGACGAAGCCGAAGCCGAAGCCGAAGCCGAAGGCGGCGTTGGTGGCTTACGGCACCGACGACGACAGTGCCGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTGCAGGGGAGATGGAGGAGGAGGAGGTCGTCGTCGGAGAATAAGAAGAAAGCGGCGTGCGTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCAGCTCGGCGAGAGCTACTTTGGCGCGAGAGAGAAGGCCGCTCACTCCGTGGCTTCGCACGTCGACGTTGTGCTTTTGGCCCGGCCGGTCTTGCCTTCCTCGCCGCTCAAGAACACCGTCAACGCTTTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.89

Weight (kDa)

9.86

Isoelectric Point (pI)

77.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 2 cut(s) 260, 325
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 17, 245
AciI CCGC 4 cut(s) 50, 173, 258, 323
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 268
AjiI CACGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 2 cut(s) 223, 234
AluI AGCT 2 cut(s) 223, 234
Alw21I GWGCWC 1 cut(s) 186
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 209
AoxI GGCC 4 cut(s) 6, 255, 297, 302
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 220
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 7, 298
AsuC2I CCSGG 2 cut(s) 88, 301
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 97, 126
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 103, 137
BcnI CCSGG 2 cut(s) 88, 301
BglII AGATCT 1 cut(s) 192
BisI GCNGC 5 cut(s) 51, 174, 221, 258, 323
BlsI GCNGC 5 cut(s) 52, 175, 222, 259, 324
Bme1390I CCNGG 2 cut(s) 88, 301
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 7, 298
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 88, 301
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpuEI CTTGAG 2 cut(s) 217, 311
BpuMI CCSGG 2 cut(s) 88, 301
BsaJI CCNNGG 2 cut(s) 113, 267
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse118I RCCGGY 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 113, 267
BseRI GAGGAG 5 cut(s) 113, 151, 154, 157, 224
BseSI GKGCMC 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 17, 245
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 4 cut(s) 8, 257, 299, 304
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 3 cut(s) 87, 301, 305
BsnI GGCC 4 cut(s) 8, 257, 299, 304
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 192, 201
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 4 cut(s) 50, 173, 258, 323
BspANI GGCC 4 cut(s) 8, 257, 299, 304
BspFNI CGCG 2 cut(s) 17, 245
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 2 cut(s) 260, 325
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 113, 267
BssMI GATC 2 cut(s) 192, 201
Bst4CI ACNGT 2 cut(s) 83, 337
BstC8I GCNNGC 2 cut(s) 178, 182
BstDSI CCRYGG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 17, 245
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 195, 204
BstMBI GATC 2 cut(s) 192, 201
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 6 cut(s) 14, 59, 186, 240, 310, 319
BstSCI CCNGG 2 cut(s) 86, 299
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 2 cut(s) 17, 245
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZI CGGCCG 1 cut(s) 302
BsuRI GGCC 4 cut(s) 8, 257, 299, 304
BtgI CCRYGG 1 cut(s) 267
BtrI CACGTC 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 88, 349
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 178, 182
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 7, 298
DpnI GATC 2 cut(s) 194, 203
DpnII GATC 2 cut(s) 192, 201
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 302
EagI CGGCCG 1 cut(s) 302
EclXI CGGCCG 1 cut(s) 302
Eco52I CGGCCG 1 cut(s) 302
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 5 cut(s) 51, 174, 221, 258, 323
Fsp4HI GCNGC 5 cut(s) 51, 174, 221, 258, 323
GlaI GCGC 1 cut(s) 244
GluI GCNGC 5 cut(s) 51, 174, 221, 258, 323
HaeIII GGCC 4 cut(s) 8, 257, 299, 304
HapII CCGG 3 cut(s) 87, 301, 305
HhaI GCGC 1 cut(s) 245
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 2 cut(s) 283, 340
HindII GTYRAC 2 cut(s) 283, 340
HinfI GANTC 3 cut(s) 12, 107, 215
HpaII CCGG 3 cut(s) 87, 301, 305
Hpy166II GTNNAC 3 cut(s) 184, 283, 340
Hpy188I TCNGA 3 cut(s) 97, 157, 206
Hpy188III TCNNGA 3 cut(s) 16, 196, 328
Hpy8I GTNNAC 3 cut(s) 184, 283, 340
Hpy99I CGWCG 8 cut(s) 22, 77, 80, 97, 154, 157, 284, 287
HpyAV CCTTC 3 cut(s) 40, 247, 324
HpyCH4III ACNGT 2 cut(s) 83, 337
HpyCH4IV ACGT 2 cut(s) 279, 285
HpyCH4V TGCA 3 cut(s) 124, 184, 349
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 59, 186, 240, 310, 319
HpySE526I ACGT 2 cut(s) 279, 285
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 192, 201
LpnPI CCDG 5 cut(s) 100, 110, 203, 314, 318
Lsp1109I GCAGC 1 cut(s) 232
MaeII ACGT 2 cut(s) 279, 285
MalI GATC 2 cut(s) 194, 203
MbiI CCGCTC 2 cut(s) 260, 325
MboI GATC 2 cut(s) 192, 201
MboII GAAGA 1 cut(s) 178
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 116, 209
MmeI TCCRAC 2 cut(s) 75, 135
MspI CCGG 3 cut(s) 87, 301, 305
MspR9I CCNGG 2 cut(s) 88, 301
MvnI CGCG 2 cut(s) 17, 245
MwoI GCNNNNNNNGC 6 cut(s) 14, 59, 186, 240, 310, 319
NciI CCSGG 2 cut(s) 88, 301
NdeII GATC 2 cut(s) 192, 201
NlaIV GGNNCC 1 cut(s) 70
NmeAIII GCCGAG 2 cut(s) 138, 204
NruI TCGCGA 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 5 cut(s) 52, 175, 222, 259, 324
PleI GAGTC 2 cut(s) 115, 209
PpsI GAGTC 2 cut(s) 115, 209
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 7, 298
PsuI RGATCY 1 cut(s) 192
RruI TCGCGA 1 cut(s) 17
SalI GTCGAC 1 cut(s) 281
SatI GCNGC 5 cut(s) 51, 174, 221, 258, 323
Sau3AI GATC 2 cut(s) 192, 201
Sau96I GGNCC 2 cut(s) 7, 298
SchI GAGTC 2 cut(s) 116, 209
ScrFI CCNGG 2 cut(s) 88, 301
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 119, 149, 225, 236, 282, 288
SgrDI CGTCGACG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 196, 326
SmoI CTYRAG 2 cut(s) 196, 326
SsiI CCGC 4 cut(s) 50, 173, 258, 323
StyD4I CCNGG 2 cut(s) 86, 299
TaaI ACNGT 2 cut(s) 83, 337
TaiI ACGT 2 cut(s) 282, 288
TaqI TCGA 1 cut(s) 282
TauI GCSGC 4 cut(s) 53, 176, 260, 325
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 88
VneI GTGCAC 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.