MD17G1049800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013201
Physical Location & Seq
Reverse (-)
3678393 .. 3679692
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1049800.v1.1.491

Sequence Viewer

Length: 468 bp
ATGCCAGAGCCCTCGTTCGTCCAAAGCCAGAGCTCTCGCCACTGCGCAATACGCACCGTTTCGACCAACATGATGGCACTTCACAAGCAGGAGGAAGAGAACCGGAACCGGAACCGGAACGAGATTCGGGAGATGATGGAGGAGGTCCGGCGGAGCATGCCGTTCGTTTCGTCGAAGGAGAAGAAGGCGTGTACGGACGAGCGGGAGGAGGACAGCGCGGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTGGGGCGATGGCGGAGGAGGACGACGAAGGAGGGGTGCGTGATGCACAGCCAGGTCTTGAGGATCAGAGAGGAGGACTCGCATCTCGGCGAGAGTACGGTTCCGATAGGTGCTGCTGCTGCTGCGGCCGGCAAAGATTATCACGGCATGGACGTTGTGCTTTTCTCCCGGCCAATCTTGCCTTCCTCGCCTCTCAAGAAAACAATCAACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.56

Weight (kDa)

7.78

Isoelectric Point (pI)

104.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 202
AccII CGCG 1 cut(s) 218
AciI CCGC 5 cut(s) 151, 202, 218, 265, 377
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 2 cut(s) 378, 422
AfaI GTAC 2 cut(s) 193, 349
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 1 cut(s) 323
AoxI GGCC 2 cut(s) 378, 422
ApeKI GCWGC 4 cut(s) 365, 368, 371, 374
AspLEI GCGC 2 cut(s) 47, 218
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 145
BanII GRGCYC 2 cut(s) 12, 35
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 4 cut(s) 352, 355, 358, 361
BccI CCATC 4 cut(s) 67, 130, 229, 255
BceAI ACGGC 2 cut(s) 145, 412
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 1 cut(s) 421
BisI GCNGC 5 cut(s) 366, 369, 372, 375, 378
BlsI GCNGC 5 cut(s) 367, 370, 373, 376, 379
Bme1390I CCNGG 2 cut(s) 305, 421
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 3 cut(s) 107, 113, 354
BmrFI CCNGG 2 cut(s) 305, 421
BmsI GCATC 2 cut(s) 285, 343
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpuEI CTTGAG 2 cut(s) 331, 431
BpuMI CCSGG 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 3 cut(s) 102, 108, 114
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse118I RCCGGY 1 cut(s) 380
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 245
BseRI GAGGAG 5 cut(s) 155, 221, 245, 283, 338
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 4 cut(s) 352, 355, 358, 361
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 380, 424
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 6 cut(s) 103, 109, 115, 148, 381, 421
BsnI GGCC 2 cut(s) 380, 424
Bsp1286I GDGCHC 2 cut(s) 12, 35
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 5 cut(s) 151, 202, 218, 265, 377
BspANI GGCC 2 cut(s) 380, 424
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 107, 113, 354
BspPI GGATC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 58, 352
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 158, 382
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 2 cut(s) 47, 218
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 7 cut(s) 51, 157, 371, 374, 377, 430, 439
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 303, 419
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 352, 355, 358, 361
BstXI CCANNNNNNTGG 1 cut(s) 73
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 380, 424
BtgZI GCGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 158, 382
CfoI GCGC 2 cut(s) 47, 218
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 192, 348
CviAII CATG 3 cut(s) 70, 157, 400
CviJI RGCY 6 cut(s) 10, 27, 33, 303, 380, 424
CviKI_1 RGCY 6 cut(s) 10, 27, 33, 303, 380, 424
CviQI GTAC 2 cut(s) 192, 348
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 2 cut(s) 378, 422
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 2 cut(s) 166, 280
Ecl136II GAGCTC 1 cut(s) 33
EclXI CGGCCG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 12, 35
Eco47I GGWCC 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 2 cut(s) 12, 35
FaeI CATG 3 cut(s) 73, 160, 403
FaiI YATR 4 cut(s) 71, 158, 401, 466
FatI CATG 3 cut(s) 69, 156, 399
FauI CCCGC 2 cut(s) 195, 211
Fnu4HI GCNGC 5 cut(s) 366, 369, 372, 375, 378
FriOI GRGCYC 2 cut(s) 12, 35
Fsp4HI GCNGC 5 cut(s) 366, 369, 372, 375, 378
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 2 cut(s) 46, 217
GluI GCNGC 5 cut(s) 366, 369, 372, 375, 378
HaeIII GGCC 2 cut(s) 380, 424
HapII CCGG 6 cut(s) 103, 109, 115, 148, 381, 421
HhaI GCGC 2 cut(s) 47, 218
Hin1II CATG 3 cut(s) 73, 160, 403
Hin6I GCGC 2 cut(s) 45, 216
HinP1I GCGC 2 cut(s) 45, 216
HinfI GANTC 3 cut(s) 124, 239, 329
HpaII CCGG 6 cut(s) 103, 109, 115, 148, 381, 421
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 3 cut(s) 229, 320, 357
Hpy188III TCNNGA 3 cut(s) 128, 310, 448
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 3 cut(s) 175, 229, 280
HpyAV CCTTC 4 cut(s) 169, 178, 274, 444
HpyCH4III ACNGT 2 cut(s) 58, 352
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 7 cut(s) 51, 157, 371, 374, 377, 430, 439
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 73, 160, 403
HspAI GCGC 2 cut(s) 45, 216
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 4 cut(s) 352, 355, 358, 361
LweI GCATC 2 cut(s) 285, 343
MaeII ACGT 1 cut(s) 405
MalI GATC 1 cut(s) 317
MbiI CCGCTC 1 cut(s) 202
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 107, 193
MhlI GDGCHC 2 cut(s) 12, 35
MlyI GAGTC 2 cut(s) 248, 323
MmeI TCCRAC 1 cut(s) 207
MroNI GCCGGC 1 cut(s) 380
MspI CCGG 6 cut(s) 103, 109, 115, 148, 381, 421
MspR9I CCNGG 2 cut(s) 305, 421
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 7 cut(s) 51, 157, 371, 374, 377, 430, 439
NaeI GCCGGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 421
NdeII GATC 1 cut(s) 315
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 3 cut(s) 73, 160, 403
NlaIV GGNNCC 3 cut(s) 107, 113, 354
NmeAIII GCCGAG 2 cut(s) 270, 318
NsbI TGCGCA 1 cut(s) 46
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 5 cut(s) 367, 370, 373, 376, 379
PleI GAGTC 2 cut(s) 247, 323
PpsI GAGTC 2 cut(s) 247, 323
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 3 cut(s) 107, 113, 354
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 2 cut(s) 193, 349
RsaNI GTAC 2 cut(s) 192, 348
SacI GAGCTC 1 cut(s) 35
SatI GCNGC 5 cut(s) 366, 369, 372, 375, 378
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 248, 323
ScrFI CCNGG 2 cut(s) 305, 421
SduI GDGCHC 2 cut(s) 12, 35
SetI ASST 6 cut(s) 35, 147, 251, 309, 364, 408
SfaNI GCATC 2 cut(s) 285, 343
SinI GGWCC 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 310, 446
SmoI CTYRAG 2 cut(s) 310, 446
SphI GCATGC 1 cut(s) 160
SsiI CCGC 5 cut(s) 151, 202, 218, 265, 377
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 303, 419
TaaI ACNGT 2 cut(s) 58, 352
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 62, 173
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 47
TseI GCWGC 4 cut(s) 365, 368, 371, 374
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 145
XceI RCATGY 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.