Rh2DG629500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013201
Physical Location & Seq
Forward (+)
85893271 .. 85893648
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG629500.1

Sequence Viewer

Length: 378 bp
ATGATCACAGTGAGACCCAAGCAGGAGGAAATGGAGGTCCGATTCGCGACGAAGCCGAAGGCGGCGGCGGCGGCGTTGGTGGCTTACGGCACCGACGACGACAGTGCCGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTGCAGGGGAGATGGAGGAGGAGGAGGTCGTCGTCGTCGGAGAATAAGAAGAAGGCGGCGTACGTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCAGCTCGGCGAGAGCTACTTTGGCGCGACAGAGAAGGCCGCTCACTCCGTGGCTTCGCGCGTCGACGTTGTGCTTTTGGCCCGGCCGGTCTTGCCTTCCTCGCCGCTCAAGAACACCGTCAACGCTTTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.78

Weight (kDa)

9.57

Isoelectric Point (pI)

83.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccBSI CCGCTC 2 cut(s) 284, 349
AccI GTMKAC 1 cut(s) 306
AccII CGCG 4 cut(s) 47, 269, 301, 303
AciI CCGC 7 cut(s) 62, 65, 68, 71, 197, 282, 347
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 1 cut(s) 203
AluBI AGCT 2 cut(s) 247, 258
AluI AGCT 2 cut(s) 247, 258
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 7
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 1 cut(s) 233
AoxI GGCC 3 cut(s) 279, 321, 326
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 244
AspLEI GCGC 2 cut(s) 269, 303
AspS9I GGNCC 2 cut(s) 37, 322
AsuC2I CCSGG 2 cut(s) 109, 325
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 256
BccI CCATC 2 cut(s) 118, 147
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 124, 158
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 109, 325
BcoDI GTCTC 1 cut(s) 7
BglII AGATCT 1 cut(s) 216
BisI GCNGC 8 cut(s) 63, 66, 69, 72, 198, 245, 282, 347
BlsI GCNGC 8 cut(s) 64, 67, 70, 73, 199, 246, 283, 348
Bme1390I CCNGG 2 cut(s) 109, 325
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 322
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 109, 325
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpuEI CTTGAG 2 cut(s) 241, 335
BpuMI CCSGG 2 cut(s) 109, 325
BsaAI YACGTR 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 134, 291
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bse118I RCCGGY 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 134, 291
BseRI GAGGAG 5 cut(s) 134, 172, 175, 178, 248
BseSI GKGCMC 1 cut(s) 210
BseX3I CGGCCG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 4 cut(s) 47, 269, 301, 303
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 3 cut(s) 281, 323, 328
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 3 cut(s) 108, 325, 329
BsiWI CGTACG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 3 cut(s) 281, 323, 328
Bso31I GGTCTC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 3, 216, 225
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 7 cut(s) 62, 65, 68, 71, 197, 282, 347
BspANI GGCC 3 cut(s) 281, 323, 328
BspFNI CGCG 4 cut(s) 47, 269, 301, 303
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 7
BsrBI CCGCTC 2 cut(s) 284, 349
BsrFI RCCGGY 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 134, 291
BssMI GATC 3 cut(s) 3, 216, 225
Bst4CI ACNGT 3 cut(s) 10, 104, 361
BstBAI YACGTR 1 cut(s) 205
BstDSI CCRYGG 1 cut(s) 291
BstFNI CGCG 4 cut(s) 47, 269, 301, 303
BstHHI GCGC 2 cut(s) 269, 303
BstKTI GATC 3 cut(s) 6, 219, 228
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 3 cut(s) 3, 216, 225
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 6 cut(s) 68, 71, 80, 264, 334, 343
BstSCI CCNGG 2 cut(s) 107, 323
BstSLI GKGCMC 1 cut(s) 210
BstUI CGCG 4 cut(s) 47, 269, 301, 303
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 326
BsuRI GGCC 3 cut(s) 281, 323, 328
BtgI CCRYGG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 15, 109, 373
BtuMI TCGCGA 1 cut(s) 47
CfoI GCGC 2 cut(s) 269, 303
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 37, 322
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 9 cut(s) 55, 83, 213, 247, 258, 281, 296, 323, 328
CviKI_1 RGCY 9 cut(s) 55, 83, 213, 247, 258, 281, 296, 323, 328
CviQI GTAC 1 cut(s) 202
DpnI GATC 3 cut(s) 5, 218, 227
DpnII GATC 3 cut(s) 3, 216, 225
DraIII CACNNNGTG 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 326
EagI CGGCCG 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 37
Eco52I CGGCCG 1 cut(s) 326
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 8 cut(s) 63, 66, 69, 72, 198, 245, 282, 347
Fsp4HI GCNGC 8 cut(s) 63, 66, 69, 72, 198, 245, 282, 347
GlaI GCGC 2 cut(s) 268, 302
GluI GCNGC 8 cut(s) 63, 66, 69, 72, 198, 245, 282, 347
HaeIII GGCC 3 cut(s) 281, 323, 328
HapII CCGG 3 cut(s) 108, 325, 329
HgaI GACGC 1 cut(s) 292
HhaI GCGC 2 cut(s) 269, 303
Hin6I GCGC 2 cut(s) 267, 301
HinP1I GCGC 2 cut(s) 267, 301
HincII GTYRAC 2 cut(s) 307, 364
HindII GTYRAC 2 cut(s) 307, 364
HinfI GANTC 3 cut(s) 42, 128, 239
HpaII CCGG 3 cut(s) 108, 325, 329
Hpy166II GTNNAC 3 cut(s) 208, 307, 364
Hpy188I TCNGA 4 cut(s) 41, 118, 181, 230
Hpy188III TCNNGA 3 cut(s) 46, 220, 352
Hpy8I GTNNAC 3 cut(s) 208, 307, 364
Hpy99I CGWCG 9 cut(s) 52, 98, 101, 118, 175, 178, 181, 308, 311
HpyAV CCTTC 4 cut(s) 52, 187, 271, 348
HpyCH4III ACNGT 3 cut(s) 10, 104, 361
HpyCH4IV ACGT 2 cut(s) 204, 309
HpyCH4V TGCA 3 cut(s) 145, 208, 373
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 71, 80, 264, 334, 343
HpySE526I ACGT 2 cut(s) 204, 309
HspAI GCGC 2 cut(s) 267, 301
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 216, 225
LpnPI CCDG 6 cut(s) 8, 121, 131, 227, 338, 342
Lsp1109I GCAGC 1 cut(s) 256
MaeII ACGT 2 cut(s) 204, 309
MalI GATC 3 cut(s) 5, 218, 227
MbiI CCGCTC 2 cut(s) 284, 349
MboI GATC 3 cut(s) 3, 216, 225
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 210
MlyI GAGTC 2 cut(s) 137, 233
MmeI TCCRAC 2 cut(s) 96, 159
MspI CCGG 3 cut(s) 108, 325, 329
MspR9I CCNGG 2 cut(s) 109, 325
MvnI CGCG 4 cut(s) 47, 269, 301, 303
MwoI GCNNNNNNNGC 6 cut(s) 68, 71, 80, 264, 334, 343
NciI CCSGG 2 cut(s) 109, 325
NdeII GATC 3 cut(s) 3, 216, 225
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 2 cut(s) 159, 228
NruI TCGCGA 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 42
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 8 cut(s) 64, 67, 70, 73, 199, 246, 283, 348
PleI GAGTC 2 cut(s) 136, 233
PpsI GAGTC 2 cut(s) 136, 233
Ppu21I YACGTR 1 cut(s) 205
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 37, 322
PsuI RGATCY 1 cut(s) 216
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SalI GTCGAC 1 cut(s) 305
SatI GCNGC 8 cut(s) 63, 66, 69, 72, 198, 245, 282, 347
Sau3AI GATC 3 cut(s) 3, 216, 225
Sau96I GGNCC 2 cut(s) 37, 322
SchI GAGTC 2 cut(s) 137, 233
ScrFI CCNGG 2 cut(s) 109, 325
SduI GDGCHC 1 cut(s) 210
SetI ASST 7 cut(s) 39, 140, 170, 207, 249, 260, 312
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 220, 350
SmoI CTYRAG 2 cut(s) 220, 350
SsiI CCGC 7 cut(s) 62, 65, 68, 71, 197, 282, 347
StyD4I CCNGG 2 cut(s) 107, 323
TaaI ACNGT 3 cut(s) 10, 104, 361
TaiI ACGT 2 cut(s) 207, 312
TaqI TCGA 1 cut(s) 306
TauI GCSGC 7 cut(s) 65, 68, 71, 74, 200, 284, 349
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 2 cut(s) 15, 109
TseI GCWGC 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 2 cut(s) 15, 109
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.