Rorug02G0535200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013201
Physical Location & Seq
Reverse (-)
66408892 .. 66410032
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0535200.1

Sequence Viewer

Length: 498 bp
ATGTGTTACGTGGGCAAAGCAACAAAGATCTTCATCTTCGTGGTCACAGTGCTTGTGGTTGTTGGCCTCATCTTGGGTTTCGGGATTCTCCGCCATGGCCTCCACGACAAGACCCACAAATGCTCCGGCGACTCCTGCAGCTCCCCACTCCAGTTCCCCAGCCCCGATTCCAGCTCCAACCAGCCCACCTCTAATCCCATTTCCACCCAGCCCACTTTCAGCCCGCCTCCACCGAGCTCCACTCCCACCCCGCCTACCCCAGATTTCGGCCCACCTCCGCCGACAACGATCTCCACTCCGACCCCACCTCCGCCCGACCCGACTTCCAATCCGCCGCCGCAAATCCCTGCTTCTAATCCGCCACCGCCAATCACTGTTTCCAATCCGCCACCGCCAATCACGGTTTCCAATCAGCCCCCGCCGCCGGTTTCTTTGGCAGCGACGCCGTACAGTCCGCCGAGTGGGGTGCAATTGACGCCGGGTCCTGTCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

16.92

Weight (kDa)

6.88

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 2 cut(s) 443, 476
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 4 cut(s) 73, 266, 424, 461
AhdI GACNNNNNGTC 1 cut(s) 480
AjuI GAANNNNNNNTTGG 4 cut(s) 361, 388, 393, 420
AluBI AGCT 3 cut(s) 141, 174, 237
AluI AGCT 3 cut(s) 141, 174, 237
Alw21I GWGCWC 1 cut(s) 239
AoxI GGCC 3 cut(s) 64, 97, 268
ApeKI GCWGC 2 cut(s) 138, 437
AspS9I GGNCC 2 cut(s) 269, 482
AsuC2I CCSGG 1 cut(s) 480
AvaII GGWCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 150, 449
BceAI ACGGC 1 cut(s) 430
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BcnI CCSGG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 136
BglII AGATCT 1 cut(s) 27
BisI GCNGC 5 cut(s) 139, 335, 338, 422, 438
BlsI GCNGC 5 cut(s) 140, 336, 339, 423, 439
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 482
BmeRI GACNNNNNGTC 1 cut(s) 480
BmgT120I GGNCC 2 cut(s) 269, 482
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 480
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpmI CTGGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 32
BsaHI GRCGYC 2 cut(s) 443, 476
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 292, 322
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 266, 424, 461
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 4 cut(s) 73, 266, 424, 461
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 150, 449
BseYI CCCAGC 2 cut(s) 158, 207
BshFI GGCC 3 cut(s) 66, 99, 270
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 3 cut(s) 126, 425, 479
BslI CCNNNNNNNGG 4 cut(s) 73, 266, 424, 461
BsnI GGCC 3 cut(s) 66, 99, 270
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 27, 288
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 3 cut(s) 66, 99, 270
BspLI GGNNCC 1 cut(s) 483
BspMAI CTGCAG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 27, 288
BssNI GRCGYC 2 cut(s) 443, 476
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 4 cut(s) 49, 376, 403, 452
BstACI GRCGYC 2 cut(s) 443, 476
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 1 cut(s) 94
BstKTI GATC 2 cut(s) 30, 291
BstMBI GATC 2 cut(s) 27, 288
BstMWI GCNNNNNNNGC 3 cut(s) 135, 421, 475
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 150, 449
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 3 cut(s) 66, 99, 270
BtgI CCRYGG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 54, 372
Cac8I GCNNGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 269, 482
CseI GACGC 2 cut(s) 451, 484
Csp6I GTAC 1 cut(s) 448
CviAII CATG 2 cut(s) 95, 491
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 29, 290
DpnII GATC 2 cut(s) 27, 288
DriI GACNNNNNGTC 1 cut(s) 480
Eam1105I GACNNNNNGTC 1 cut(s) 480
EciI GGCGGA 7 cut(s) 80, 267, 300, 321, 348, 375, 444
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 98, 494
FaiI YATR 2 cut(s) 96, 492
FatI CATG 2 cut(s) 94, 490
FauI CCCGC 3 cut(s) 231, 258, 426
Fnu4HI GCNGC 5 cut(s) 139, 335, 338, 422, 438
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 5 cut(s) 139, 335, 338, 422, 438
GluI GCNGC 5 cut(s) 139, 335, 338, 422, 438
GsaI CCCAGC 2 cut(s) 162, 211
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 3 cut(s) 66, 99, 270
HapII CCGG 3 cut(s) 126, 425, 479
HgaI GACGC 2 cut(s) 451, 484
Hin1I GRCGYC 2 cut(s) 443, 476
Hin1II CATG 2 cut(s) 98, 494
HinfI GANTC 3 cut(s) 85, 131, 167
HpaII CCGG 3 cut(s) 126, 425, 479
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 445
HpyCH4III ACNGT 4 cut(s) 49, 376, 403, 452
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 138, 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 421, 475
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 2 cut(s) 443, 476
Hsp92II CATG 2 cut(s) 98, 494
Kzo9I GATC 2 cut(s) 27, 288
LmnI GCTCC 4 cut(s) 128, 146, 179, 242
Lsp1109I GCAGC 2 cut(s) 150, 449
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 5, 43
MalI GATC 2 cut(s) 29, 290
MboI GATC 2 cut(s) 27, 288
MboII GAAGA 2 cut(s) 22, 28
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 470
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 201, 323
MnlI CCTC 6 cut(s) 77, 110, 199, 237, 285, 318
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 3 cut(s) 126, 425, 479
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 135, 421, 475
NciI CCSGG 1 cut(s) 480
NcoI CCATGG 1 cut(s) 94
NdeII GATC 2 cut(s) 27, 288
NlaIII CATG 2 cut(s) 98, 494
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 85, 167
PkrI GCNGC 5 cut(s) 140, 336, 339, 423, 439
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 482
PspFI CCCAGC 2 cut(s) 158, 207
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 2 cut(s) 269, 482
PspPPI RGGWCCY 1 cut(s) 482
PstI CTGCAG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 239
SatI GCNGC 5 cut(s) 139, 335, 338, 422, 438
Sau3AI GATC 2 cut(s) 27, 288
Sau96I GGNCC 2 cut(s) 269, 482
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 1 cut(s) 239
SetI ASST 7 cut(s) 12, 143, 176, 191, 239, 277, 310
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 470
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 4 cut(s) 49, 376, 403, 452
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 470
TauI GCSGC 3 cut(s) 337, 340, 424
TfiI GAWTC 2 cut(s) 85, 167
TscAI CASTG 2 cut(s) 54, 379
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 138, 437
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 22
TspRI CASTG 2 cut(s) 54, 379
VpaK11BI GGWCC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.