Rroxscaffold_2G00082720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013201
Physical Location & Seq
Reverse (-)
5486092 .. 5487228
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082720.1

Sequence Viewer

Length: 432 bp
ATGATCACAGTGAGACCCAAGCAGGAGGAAATGGAGGTCCGATTCGCGACGAAGCCGAAGCCGAAGCCGAAGGCTGCGGCGTTAGTGGCTTACGGCACCGACGATGACAGTGCCGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTGCAGGGGAGATGGAGGAGGAGGAGGTCGTCGTCGGAGAATAAGAAGAAGGCGGCGTACGTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCAGCTCGGCGAGAGCTATTTTGGCGCCAAAGAGAAGGCCGCTCACGCCGTGGCTTCGCGCGTCGACGTTATGATTCTGGCCCGGCCGGGTCTTGCCTTCCTCGCCGCTCAAGAACACCGTCAACGCTTTGCACTGAGCGCTCTGCTTATTCTGGGAGAGCAGCTATCTGAGAGACTGAGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.06

Weight (kDa)

9.92

Isoelectric Point (pI)

73.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 95, 269
AccBSI CCGCTC 2 cut(s) 287, 353
AccI GTMKAC 1 cut(s) 309
AccII CGCG 3 cut(s) 47, 304, 306
AciI CCGC 4 cut(s) 77, 200, 285, 351
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 1 cut(s) 206
AfeI AGCGCT 1 cut(s) 385
AluBI AGCT 3 cut(s) 250, 261, 409
AluI AGCT 3 cut(s) 250, 261, 409
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 3 cut(s) 7, 412, 418
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 236
Aor51HI AGCGCT 1 cut(s) 385
AoxI GGCC 3 cut(s) 282, 324, 329
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 74, 247, 406
AspLEI GCGC 3 cut(s) 272, 306, 386
AspS9I GGNCC 2 cut(s) 37, 325
AsuC2I CCSGG 3 cut(s) 115, 328, 333
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 2 cut(s) 95, 269
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 61, 259, 418
BccI CCATC 2 cut(s) 124, 153
BceAI ACGGC 2 cut(s) 109, 278
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 130, 164
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 3 cut(s) 115, 328, 333
BcoDI GTCTC 3 cut(s) 7, 412, 418
BfoI RGCGCY 2 cut(s) 273, 387
BglII AGATCT 1 cut(s) 219
BisI GCNGC 7 cut(s) 75, 78, 201, 248, 285, 351, 407
BlsI GCNGC 7 cut(s) 76, 79, 202, 249, 286, 352, 408
Bme1390I CCNGG 3 cut(s) 115, 328, 333
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 325
BmiI GGNNCC 2 cut(s) 97, 271
BmrFI CCNGG 3 cut(s) 115, 328, 333
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpuEI CTTGAG 2 cut(s) 244, 339
BpuMI CCSGG 3 cut(s) 115, 328, 333
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 2 cut(s) 7, 418
BsaJI CCNNGG 2 cut(s) 140, 294
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
BseDI CCNNGG 2 cut(s) 140, 294
BseMII CTCAG 3 cut(s) 371, 405, 413
BseRI GAGGAG 5 cut(s) 140, 178, 181, 184, 251
BseSI GKGCMC 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 329
BseXI GCAGC 3 cut(s) 61, 259, 418
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 3 cut(s) 47, 304, 306
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 284, 326, 331
BshNI GGYRCC 2 cut(s) 95, 269
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 3 cut(s) 114, 328, 332
BsiWI CGTACG 1 cut(s) 204
BsmAI GTCTC 3 cut(s) 7, 412, 418
BsnI GGCC 3 cut(s) 284, 326, 331
Bso31I GGTCTC 2 cut(s) 7, 418
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 3, 219, 228
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 4 cut(s) 77, 200, 285, 351
BspANI GGCC 3 cut(s) 284, 326, 331
BspCNI CTCAG 3 cut(s) 372, 406, 414
BspFNI CGCG 3 cut(s) 47, 304, 306
BspLI GGNNCC 2 cut(s) 97, 271
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 2 cut(s) 95, 269
BspTNI GGTCTC 2 cut(s) 7, 418
BsrBI CCGCTC 2 cut(s) 287, 353
BssECI CCNNGG 2 cut(s) 140, 294
BssMI GATC 3 cut(s) 3, 219, 228
BssNI GRCGYC 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 10, 110, 365
BstACI GRCGYC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 380, 414, 422
BstDSI CCRYGG 1 cut(s) 294
BstFNI CGCG 3 cut(s) 47, 304, 306
BstH2I RGCGCY 2 cut(s) 273, 387
BstHHI GCGC 3 cut(s) 272, 306, 386
BstKTI GATC 3 cut(s) 6, 222, 231
BstMAI GTCTC 3 cut(s) 7, 412, 418
BstMBI GATC 3 cut(s) 3, 219, 228
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 5 cut(s) 86, 267, 290, 347, 383
BstSCI CCNGG 3 cut(s) 113, 326, 331
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 3 cut(s) 47, 304, 306
BstV1I GCAGC 3 cut(s) 61, 259, 418
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 329
BsuRI GGCC 3 cut(s) 284, 326, 331
BtgI CCRYGG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 15, 115, 377
BtuMI TCGCGA 1 cut(s) 47
CfoI GCGC 3 cut(s) 272, 306, 386
Cfr13I GGNCC 2 cut(s) 37, 325
CseI GACGC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 429
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 380, 414, 422
DinI GGCGCC 1 cut(s) 271
DpnI GATC 3 cut(s) 5, 221, 230
DpnII GATC 3 cut(s) 3, 219, 228
DraIII CACNNNGTG 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 329
EagI CGGCCG 1 cut(s) 329
EclXI CGGCCG 1 cut(s) 329
Eco31I GGTCTC 2 cut(s) 7, 418
Eco47I GGWCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 329
EgeI GGCGCC 1 cut(s) 271
EheI GGCGCC 1 cut(s) 271
FaeI CATG 1 cut(s) 432
FaiI YATR 2 cut(s) 317, 430
FatI CATG 1 cut(s) 428
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 7 cut(s) 75, 78, 201, 248, 285, 351, 407
Fsp4HI GCNGC 7 cut(s) 75, 78, 201, 248, 285, 351, 407
GlaI GCGC 3 cut(s) 271, 305, 385
GluI GCNGC 7 cut(s) 75, 78, 201, 248, 285, 351, 407
HaeII RGCGCY 2 cut(s) 273, 387
HaeIII GGCC 3 cut(s) 284, 326, 331
HapII CCGG 3 cut(s) 114, 328, 332
HgaI GACGC 1 cut(s) 295
HhaI GCGC 3 cut(s) 272, 306, 386
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 432
Hin6I GCGC 3 cut(s) 270, 304, 384
HinP1I GCGC 3 cut(s) 270, 304, 384
HincII GTYRAC 2 cut(s) 310, 368
HindII GTYRAC 2 cut(s) 310, 368
HinfI GANTC 4 cut(s) 42, 134, 242, 319
HpaII CCGG 3 cut(s) 114, 328, 332
Hpy166II GTNNAC 3 cut(s) 211, 310, 368
Hpy188I TCNGA 5 cut(s) 41, 124, 184, 233, 415
Hpy188III TCNNGA 3 cut(s) 46, 223, 356
Hpy8I GTNNAC 3 cut(s) 211, 310, 368
Hpy99I CGWCG 7 cut(s) 52, 104, 124, 181, 184, 311, 314
HpyAV CCTTC 4 cut(s) 64, 190, 274, 352
HpyCH4III ACNGT 3 cut(s) 10, 110, 365
HpyCH4IV ACGT 2 cut(s) 207, 312
HpyCH4V TGCA 3 cut(s) 151, 211, 377
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 267, 290, 347, 383
HpyF3I CTNAG 3 cut(s) 380, 414, 422
HpySE526I ACGT 2 cut(s) 207, 312
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 432
HspAI GCGC 3 cut(s) 270, 304, 384
KasI GGCGCC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 219, 228
LpnPI CCDG 8 cut(s) 8, 127, 137, 230, 308, 341, 345, 383
Lsp1109I GCAGC 3 cut(s) 61, 259, 418
MaeII ACGT 2 cut(s) 207, 312
MalI GATC 3 cut(s) 5, 221, 230
MbiI CCGCTC 2 cut(s) 287, 353
MboI GATC 3 cut(s) 3, 219, 228
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 213
Mly113I GGCGCC 1 cut(s) 270
MlyI GAGTC 2 cut(s) 143, 236
MmeI TCCRAC 2 cut(s) 102, 162
MspI CCGG 3 cut(s) 114, 328, 332
MspR9I CCNGG 3 cut(s) 115, 328, 333
MvnI CGCG 3 cut(s) 47, 304, 306
MwoI GCNNNNNNNGC 5 cut(s) 86, 267, 290, 347, 383
NarI GGCGCC 1 cut(s) 270
NciI CCSGG 3 cut(s) 115, 328, 333
NdeII GATC 3 cut(s) 3, 219, 228
NlaIII CATG 1 cut(s) 432
NlaIV GGNNCC 2 cut(s) 97, 271
NmeAIII GCCGAG 2 cut(s) 165, 231
NruI TCGCGA 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 2 cut(s) 42, 319
Pfl23II CGTACG 1 cut(s) 204
PkrI GCNGC 7 cut(s) 76, 79, 202, 249, 286, 352, 408
PleI GAGTC 2 cut(s) 142, 236
PluTI GGCGCC 1 cut(s) 273
PpsI GAGTC 2 cut(s) 142, 236
Ppu21I YACGTR 1 cut(s) 208
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 97, 271
PspPI GGNCC 2 cut(s) 37, 325
PsuI RGATCY 1 cut(s) 219
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SalI GTCGAC 1 cut(s) 308
SatI GCNGC 7 cut(s) 75, 78, 201, 248, 285, 351, 407
Sau3AI GATC 3 cut(s) 3, 219, 228
Sau96I GGNCC 2 cut(s) 37, 325
SchI GAGTC 2 cut(s) 143, 236
ScrFI CCNGG 3 cut(s) 115, 328, 333
SduI GDGCHC 1 cut(s) 213
SetI ASST 8 cut(s) 39, 146, 176, 210, 252, 263, 315, 411
SfoI GGCGCC 1 cut(s) 271
SgrDI CGTCGACG 1 cut(s) 308
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 223, 354
SmoI CTYRAG 2 cut(s) 223, 354
SsiI CCGC 4 cut(s) 77, 200, 285, 351
SspDI GGCGCC 1 cut(s) 269
StyD4I CCNGG 3 cut(s) 113, 326, 331
TaaI ACNGT 3 cut(s) 10, 110, 365
TaiI ACGT 2 cut(s) 210, 315
TaqI TCGA 1 cut(s) 309
TauI GCSGC 4 cut(s) 80, 203, 287, 353
TfiI GAWTC 2 cut(s) 42, 319
TscAI CASTG 3 cut(s) 15, 115, 384
TseI GCWGC 3 cut(s) 74, 247, 406
TspRI CASTG 3 cut(s) 15, 115, 384
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.