MD09G1049600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013201
Physical Location & Seq
Reverse (-)
3308506 .. 3309818
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1049600.v1.1.491

Sequence Viewer

Length: 384 bp
ATGACACTGCGTTACAAGCCGGAGGAGGAGAACCGGAACCAGAGCGAGATTCCGGAGGAGGTCCGGCGGAGCATGCTGTCCGTATCGTCGAAGGAGAAGAAGGCGTGTACGGAGGACCGGGATGAGGACAGCGCGGGATCGTCGGAAGAGATGGAGTCGCCGAGGTCGGTGGGGCGATGGCGGAGGGGGAAGACGAAGAAGACGGGGTGCGTGCTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCATCTCGGCGAGAGTACGGCTCTGATCGGTGCTGCCGCTGCATCTGGAAAAGATTATCACGGCATTGACGTCGTTCTATTCGCCCGGCCAATCTTGCCTTCCTCGCCTCTCAAGAACACAATCAACGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.13

Weight (kDa)

6.84

Isoelectric Point (pI)

85.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccII CGCG 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 4 cut(s) 67, 134, 181, 288
AclWI GGATC 2 cut(s) 145, 242
AcoI YGGCCR 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 2 cut(s) 109, 268
AfiI CCNNNNNNNGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
AlwI GGATC 2 cut(s) 145, 242
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 3 cut(s) 214, 284, 290
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 61, 115
AsuC2I CCSGG 2 cut(s) 119, 337
AvaII GGWCC 2 cut(s) 61, 115
BbsI GAAGAC 2 cut(s) 197, 206
BbvI GCAGC 3 cut(s) 201, 271, 277
BccI CCATC 2 cut(s) 145, 171
BceAI ACGGC 2 cut(s) 285, 328
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BcnI CCSGG 2 cut(s) 119, 337
BglII AGATCT 1 cut(s) 225
BisI GCNGC 4 cut(s) 215, 285, 288, 291
BlsI GCNGC 4 cut(s) 216, 286, 289, 292
Bme1390I CCNGG 2 cut(s) 119, 337
Bme18I GGWCC 2 cut(s) 61, 115
BmgT120I GGNCC 2 cut(s) 61, 115
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 2 cut(s) 119, 337
BmsI GCATC 2 cut(s) 262, 302
BpiI GAAGAC 2 cut(s) 197, 206
BplI GAGNNNNNCTC 4 cut(s) 233, 265, 256, 288
BpuEI CTTGAG 2 cut(s) 250, 347
BpuMI CCSGG 2 cut(s) 119, 337
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 2 cut(s) 33, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 124
BseRI GAGGAG 4 cut(s) 38, 41, 71, 257
BseXI GCAGC 3 cut(s) 201, 271, 277
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 340
BsiSI CCGG 6 cut(s) 20, 34, 53, 64, 118, 337
BslI CCNNNNNNNGG 1 cut(s) 124
BsnI GGCC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 4 cut(s) 137, 225, 234, 276
BspACI CCGC 4 cut(s) 67, 134, 181, 288
BspANI GGCC 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 52
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 145, 242
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 4 cut(s) 137, 225, 234, 276
BssNI GRCGYC 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 74, 212
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 140, 228, 237, 279
BstMBI GATC 4 cut(s) 137, 225, 234, 276
BstMWI GCNNNNNNNGC 5 cut(s) 16, 73, 290, 346, 355
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 117, 335
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 201, 271, 277
BstV2I GAAGAC 2 cut(s) 197, 206
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 74, 212
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 61, 115
Csp6I GTAC 2 cut(s) 108, 267
CviAII CATG 1 cut(s) 73
CviJI RGCY 4 cut(s) 19, 222, 272, 340
CviKI_1 RGCY 4 cut(s) 19, 222, 272, 340
CviQI GTAC 2 cut(s) 108, 267
DpnI GATC 4 cut(s) 139, 227, 236, 278
DpnII GATC 4 cut(s) 137, 225, 234, 276
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 2 cut(s) 82, 196
Eco47I GGWCC 2 cut(s) 61, 115
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 215, 285, 288, 291
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 215, 285, 288, 291
GlaI GCGC 1 cut(s) 133
GluI GCNGC 4 cut(s) 215, 285, 288, 291
HaeIII GGCC 1 cut(s) 340
HapII CCGG 6 cut(s) 20, 34, 53, 64, 118, 337
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 3 cut(s) 49, 155, 248
HpaII CCGG 6 cut(s) 20, 34, 53, 64, 118, 337
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 145, 239, 276
Hpy188III TCNNGA 4 cut(s) 53, 229, 297, 364
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 3 cut(s) 91, 145, 326
HpyAV CCTTC 3 cut(s) 85, 94, 360
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 217, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 73, 290, 346, 355
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 132
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 4 cut(s) 137, 225, 234, 276
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 33, 47, 53, 66, 77, 131, 236, 282, 350
Lsp1109I GCAGC 3 cut(s) 201, 271, 277
LweI GCATC 2 cut(s) 262, 302
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 139, 227, 236, 278
MboI GATC 4 cut(s) 137, 225, 234, 276
MboII GAAGA 5 cut(s) 109, 158, 202, 208, 211
MflI RGATCY 1 cut(s) 225
MlyI GAGTC 2 cut(s) 164, 242
MmeI TCCRAC 1 cut(s) 123
MroI TCCGGA 1 cut(s) 52
MseI TTAA 1 cut(s) 382
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 6 cut(s) 20, 34, 53, 64, 118, 337
MspR9I CCNGG 2 cut(s) 119, 337
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 16, 73, 290, 346, 355
NciI CCSGG 2 cut(s) 119, 337
NdeII GATC 4 cut(s) 137, 225, 234, 276
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 38
NmeAIII GCCGAG 2 cut(s) 186, 237
NspI RCATGY 1 cut(s) 76
PaeI GCATGC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 4 cut(s) 216, 286, 289, 292
PleI GAGTC 2 cut(s) 163, 242
PpsI GAGTC 2 cut(s) 163, 242
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 2 cut(s) 61, 115
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 2 cut(s) 109, 268
RsaNI GTAC 2 cut(s) 108, 267
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 4 cut(s) 215, 285, 288, 291
Sau3AI GATC 4 cut(s) 137, 225, 234, 276
Sau96I GGNCC 2 cut(s) 61, 115
SchI GAGTC 2 cut(s) 164, 242
ScrFI CCNGG 2 cut(s) 119, 337
SetI ASST 3 cut(s) 63, 167, 324
SfaNI GCATC 2 cut(s) 262, 302
SinI GGWCC 2 cut(s) 61, 115
SmlI CTYRAG 2 cut(s) 229, 362
SmoI CTYRAG 2 cut(s) 229, 362
SphI GCATGC 1 cut(s) 76
SsiI CCGC 4 cut(s) 67, 134, 181, 288
StyD4I CCNGG 2 cut(s) 117, 335
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 89
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TscAI CASTG 1 cut(s) 12
TseI GCWGC 3 cut(s) 214, 284, 290
TspGWI ACGGA 2 cut(s) 70, 125
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 61, 115
XceI RCATGY 1 cut(s) 76
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.