pycom17g04470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013201
Physical Location & Seq
Reverse (-)
3059356 .. 3059823
468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g04470.1

Sequence Viewer

Length: 468 bp
ATGCCAGAGCTCGCGTTCGTCCAAAGCCATAGCTCTCGCCACTGCGCAATACGCACCGTTTCGACCAACATGATGACACTGCGTCACAAGCAGGAGGAAGAGAACCGGAACCGGAACCAGATCGAGATTCGGGAGATGATGGAGAAGGTCCGGCGGAGCATGCTGTTCGTTTCGTCGAAGGAGAAGAAGGCGTGTACGGACGAGCGGGAGGAGGACAGCGCGGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTTGGGCGATGGCGGAGGAGGACGACGAAGGAGGGGTGCGTGATGCACAGCCAGGTCTTGAGGATCAGAGAGGAGGACTCGCATCTCGGCGAGAGTACGGTTCCGATAGGTGCTGCTGCTGCGGCCGGCAAAGATTATCACGGCATGGACGTTGTGCTTTTCGCCCGGCCAATCTTGCCTTCCTCGCCTCTCAAGAAAACGATCAACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.65

Weight (kDa)

8.88

Isoelectric Point (pI)

92.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15190 AT5G15190
fragaria_vesca FvH4_6g48930 FvH4_6g48930
malus_domestica MD09G1049600.v1.1 MD17G1049800.v1.1
prunus_persica Prupe.3G269200_v2.0.a1
pyrus_communis pycom111g04060 pycom17g04470
rosa_chinensis RchiOBHm_Chr2g0168741
rosa_laevigata RLG00000021806
rosa_multiflora Rmu_sc0012935.1_g000006 Rmu_sc0022948.1_g000001
rosa_roxburghii Rroxscaffold_2G00082720
rosa_rugosa Rorug02G0535200
rosa_samantha Rh2CG587000 Rh2DG629500
rosa_wichuraiana Rw2G050230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 2 cut(s) 14, 221
AciI CCGC 5 cut(s) 154, 205, 221, 268, 377
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 2 cut(s) 378, 422
AfaI GTAC 2 cut(s) 196, 352
AhdI GACNNNNNGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 306
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 2 cut(s) 10, 33
AluI AGCT 2 cut(s) 10, 33
Alw21I GWGCWC 1 cut(s) 12
AlwI GGATC 1 cut(s) 326
AoxI GGCC 2 cut(s) 378, 422
ApeKI GCWGC 3 cut(s) 368, 371, 374
AspLEI GCGC 2 cut(s) 47, 221
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 355, 358, 361
BccI CCATC 3 cut(s) 133, 232, 258
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 421
BisI GCNGC 4 cut(s) 369, 372, 375, 378
BlsI GCNGC 4 cut(s) 370, 373, 376, 379
Bme1390I CCNGG 2 cut(s) 308, 421
Bme18I GGWCC 1 cut(s) 148
BmeRI GACNNNNNGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 110, 116, 357
BmrFI CCNGG 2 cut(s) 308, 421
BmsI GCATC 2 cut(s) 288, 346
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpuEI CTTGAG 2 cut(s) 334, 431
BpuMI CCSGG 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 105, 111
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 380
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 248
BseRI GAGGAG 4 cut(s) 224, 248, 286, 341
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 3 cut(s) 355, 358, 361
Bsh1236I CGCG 2 cut(s) 14, 221
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 380, 424
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 5 cut(s) 106, 112, 151, 381, 421
BsnI GGCC 2 cut(s) 380, 424
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 120, 318, 456
BspACI CCGC 5 cut(s) 154, 205, 221, 268, 377
BspANI GGCC 2 cut(s) 380, 424
BspFNI CGCG 2 cut(s) 14, 221
BspLI GGNNCC 3 cut(s) 110, 116, 357
BspPI GGATC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 3 cut(s) 120, 318, 456
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 58, 355
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 12, 161, 382
BstDEI CTNAG 1 cut(s) 465
BstFNI CGCG 2 cut(s) 14, 221
BstHHI GCGC 2 cut(s) 47, 221
BstKTI GATC 3 cut(s) 123, 321, 459
BstMBI GATC 3 cut(s) 120, 318, 456
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 7 cut(s) 51, 88, 160, 374, 377, 430, 439
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 306, 419
BstUI CGCG 2 cut(s) 14, 221
BstV1I GCAGC 3 cut(s) 355, 358, 361
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 380, 424
BtgZI GCGATG 1 cut(s) 277
BtsI GCAGTG 2 cut(s) 40, 77
BtsIMutI CAGTG 2 cut(s) 40, 77
Cac8I GCNNGC 3 cut(s) 12, 161, 382
CfoI GCGC 2 cut(s) 47, 221
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 195, 351
CviAII CATG 3 cut(s) 70, 160, 400
CviJI RGCY 6 cut(s) 10, 27, 33, 306, 380, 424
CviKI_1 RGCY 6 cut(s) 10, 27, 33, 306, 380, 424
CviQI GTAC 2 cut(s) 195, 351
DdeI CTNAG 1 cut(s) 465
DpnI GATC 3 cut(s) 122, 320, 458
DpnII GATC 3 cut(s) 120, 318, 456
DriI GACNNNNNGTC 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 378, 422
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 93
Eam1105I GACNNNNNGTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 93
EciI GGCGGA 2 cut(s) 169, 283
Ecl136II GAGCTC 1 cut(s) 10
EclXI CGGCCG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 3 cut(s) 73, 163, 403
FaiI YATR 4 cut(s) 30, 71, 161, 401
FatI CATG 3 cut(s) 69, 159, 399
FauI CCCGC 2 cut(s) 198, 214
Fnu4HI GCNGC 4 cut(s) 369, 372, 375, 378
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 369, 372, 375, 378
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 2 cut(s) 46, 220
GluI GCNGC 4 cut(s) 369, 372, 375, 378
HaeIII GGCC 2 cut(s) 380, 424
HapII CCGG 5 cut(s) 106, 112, 151, 381, 421
HgaI GACGC 1 cut(s) 71
HhaI GCGC 2 cut(s) 47, 221
Hin1II CATG 3 cut(s) 73, 163, 403
Hin6I GCGC 2 cut(s) 45, 219
HinP1I GCGC 2 cut(s) 45, 219
HinfI GANTC 3 cut(s) 127, 242, 332
HpaII CCGG 5 cut(s) 106, 112, 151, 381, 421
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 232, 323, 360
Hpy188III TCNNGA 4 cut(s) 124, 131, 313, 448
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 3 cut(s) 178, 232, 283
HpyAV CCTTC 5 cut(s) 139, 172, 181, 277, 444
HpyCH4III ACNGT 2 cut(s) 58, 355
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 7 cut(s) 51, 88, 160, 374, 377, 430, 439
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 73, 163, 403
HspAI GCGC 2 cut(s) 45, 219
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 120, 318, 456
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 3 cut(s) 355, 358, 361
LweI GCATC 2 cut(s) 288, 346
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 122, 320, 458
MbiI CCGCTC 1 cut(s) 205
MboI GATC 3 cut(s) 120, 318, 456
MboII GAAGA 2 cut(s) 110, 196
MhlI GDGCHC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 251, 326
MmeI TCCRAC 1 cut(s) 210
MroNI GCCGGC 1 cut(s) 380
MspI CCGG 5 cut(s) 106, 112, 151, 381, 421
MspR9I CCNGG 2 cut(s) 308, 421
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 2 cut(s) 14, 221
MwoI GCNNNNNNNGC 7 cut(s) 51, 88, 160, 374, 377, 430, 439
NaeI GCCGGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 421
NdeII GATC 3 cut(s) 120, 318, 456
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 3 cut(s) 73, 163, 403
NlaIV GGNNCC 3 cut(s) 110, 116, 357
NmeAIII GCCGAG 2 cut(s) 273, 321
NmuCI GTSAC 1 cut(s) 83
NsbI TGCGCA 1 cut(s) 46
NspI RCATGY 1 cut(s) 163
PaeI GCATGC 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 370, 373, 376, 379
PleI GAGTC 2 cut(s) 250, 326
PpsI GAGTC 2 cut(s) 250, 326
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 3 cut(s) 110, 116, 357
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 2 cut(s) 196, 352
RsaNI GTAC 2 cut(s) 195, 351
SacI GAGCTC 1 cut(s) 12
SatI GCNGC 4 cut(s) 369, 372, 375, 378
Sau3AI GATC 3 cut(s) 120, 318, 456
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 251, 326
ScrFI CCNGG 2 cut(s) 308, 421
SduI GDGCHC 1 cut(s) 12
SetI ASST 7 cut(s) 12, 35, 150, 254, 312, 367, 408
SfaNI GCATC 2 cut(s) 288, 346
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 2 cut(s) 313, 446
SmoI CTYRAG 2 cut(s) 313, 446
SphI GCATGC 1 cut(s) 163
SsiI CCGC 5 cut(s) 154, 205, 221, 268, 377
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 306, 419
TaaI ACNGT 2 cut(s) 58, 355
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 62, 123, 176
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 2 cut(s) 47, 84
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 368, 371, 374
Tsp45I GTSAC 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 47, 84
VpaK11BI GGWCC 1 cut(s) 148
XceI RCATGY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.