Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

5474366 .. 5480067

Gene Structure 5702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGCACCCTCCGGCACCGTCGCCGATCCTCCGCAATGTTCAACCACCGATTCATTCAATTCCAGCGACACAGCAGAGAATGATATTCGGCCATTTTTTGTACTTCACAAGGCTTCGTCTGGTAATCACAATGGGAAATTAACTGGGATTGTGAAAAGCAAGCGGAGGATCGAATCACCTTCACCTAAAATTGCTAAAAGATCTGAGGTCGAAAGCGTGGAAGAGGAAGATGGCCAGTTTTTCTCAACTCTTCGCTTTAAAGTTTTCGAGACTGTCTGGTCGAAAATCGAGAAAACAATTGAAGATGTCCTGAGAAATTCGAACTCTAAAGTATTTAGTGGGATTCATGATTGGATACGGGAATCATTTGAATCGATCATATCATCTGGAGCACTTAAGTTATCGGAAGCAGTTCGATCTTATCCTGTTTTAACTCAAGCTTCTTCTAAGCAATTGCTTACTGCAATGGTTCTCACCAGGAATCTGGAAATGGTTGATGATTTATTGACATTTGAAGAACTGGAGTTGCACTTGAAGTCTCAAGGATGTCATGTGGCTAAGCTTTCATCTATGGACTTCTCAGCCAAGAGTGGTGTAGGAGGTTGCCTTAGAGGTTTGTTACGCCAGTTTGTGATGCCAACCGTAGATGTGGCTGATGTGACCATTCTCGCATCATGGTACAGAGAAAACAAAAACCATGAGAATCCCGTGGTTATAATTGTGGATGATACAGAGAGATGCTGTGGTCCTGTACTGTCGGATTTAATTCTTATATTAAGCGAATGGGCAATCAAAGTTCCAATTTTTCTGATAATGGGTGTGTCCACAGCACATGATGCGCCTAGAAAGATATTATCAGTGAACGCGCTGCAGAGACTTTGTGCTACTAGGTTCACTTTGAGCTCCCCGGCTGAACGGATGGATGCAGTTCTCAAGGCTGTTTTCTTAAAGCCGTGTTCTGGGTTCACTGTTAGCCATAAGGTGGCACTTTTTATGAGAAGTTACTTTTTGTGTCAAGATGGAACACTGACATCTTTTGTTAGAACTCTCAAGATAGCCTGTCTACAACATTTCTCATTAGAGCCTTTAAGCATCATGCTCGAGCACTTTTGTCATGATGGTGTTAATCAGCTGTCAGGTGAAGGCACTGAACTATTGACAGAAGCAACAATGAAACATGCCTTTGACTTGCCATCTGTGACGAGGAATAAAATTACTCGGAGTACATTTGAAATGCTACCTCATTTTTTGTTGGACTTGCAAAGGATGCCAAACCCCTGGAGCATAGTAGTTTTGTGCTTATATGAAGCTGGAAAGTTTGATAAACTTCGATTGCTAGACATATTCTGTGAGATACTTGACCCAGAAGCACGTTACCTGAAATACTTTTCACCTTCGGAAATTGTTAACTCTCAGAGTCACAATTCAGGACGTAATAATGTTATCCGACGGGTTTTGCGCAAGCTCAGGGATCTTTCACCTTCACAGCTGTCTAGCATGTTGAAAAGTTGGGAAAATCTCACTGCGGAGTTCACTGAGATCAATGACAAAGTTATTGAATTGCATCCGTTCATGAGAGCCGTGGAAGCAGCTGGTCAGAGACAAGGACTTCCTAACAGCCCAAAAAAGCATGCATCTCGAAGCAATTCAAAGCTTGAAAAAGAGCTTAAAGCCATGACTGATAAGGTTGCCACAGTCATAGAATTCATGCTAAGGGAATATATGAAGCCAGTTGAGAGTGTTCCTTTCCACGAAATTTTGTGTTTCAAGAATGTCGATAAACTTCAATCTGCTTTACTTGGAGACCCGAGAGGCAGGATCCAATTAGATCTACTGGAATCTCACGATATCCTCCACTGTGTGTGCTGCAGCCAGAGAGGCACAACTCTACTGCCTTCCATGCATGATACATCGATTTTGTATAAACTGGCGCAAGAGCACGCTGATGTCATTAACCTCCATGACTGGTATCAATCTTTCAAGACGATACTTATTCCCCGGAGTAGCAAGGCTAAACAAAAATCTAAGTCATCTTCAAAATCAAAGAAACGGAAGGAAATATGCGAAGAACCAGAAGCACCCGCTGAAGCTTTAATTCAAGCTCGATTTTGCAGAGCTGTGATGGAGCTTCAGATAACAGGACTTATTCGCATGCCTTCAAAAAGACGTCCAGATTTTGTGCAAAGAGTGGCTTTTGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

734

Amino Acids

82.75

Weight (kDa)

8.58

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC3_N	PF07034	23 - 366	1.1e-75	Origin recognition complex (ORC) subunit 3 N-terminus
WHD_ORC	PF18137	604 - 706	8.4e-17	Origin recognition complex winged helix C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
AasI	GACNNNNNNGTC	1 cut(s)	277
AatII	GACGTC	1 cut(s)	2170
Acc16I	TGCGCA	1 cut(s)	1460
AccB1I	GGYRCC	2 cut(s)	4, 14
AccB7I	CCANNNNNTGG	1 cut(s)	982
AccI	GTMKAC	1 cut(s)	1063
AccII	CGCG	1 cut(s)	866
AciI	CCGC	4 cut(s)	32, 163, 1526, 2082
AclWI	GGATC	5 cut(s)	20, 176, 1479, 1813, 1826
AcoI	YGGCCR	2 cut(s)	89, 232
AcsI	RAATTY	3 cut(s)	316, 1703, 1755
AcuI	CTGAAG	2 cut(s)	2106, 2114
AcyI	GRCGYC	1 cut(s)	2167
AdeI	CACNNNGTG	1 cut(s)	1861
AfaI	GTAC	4 cut(s)	102, 680, 753, 1225
AfiI	CCNNNNNNNGG	2 cut(s)	959, 982
AflII	CTTAAG	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	476, 1277
Alw21I	GWGCWC	4 cut(s)	394, 905, 1107, 1941
Alw26I	GTCTC	5 cut(s)	263, 543, 868, 1594, 1797
AlwI	GGATC	5 cut(s)	20, 176, 1479, 1813, 1826
Ama87I	CYCGRG	2 cut(s)	1100, 1807
AoxI	GGCC	2 cut(s)	89, 232
ApeKI	GCWGC	4 cut(s)	868, 1589, 1866, 1869
ApoI	RAATTY	3 cut(s)	316, 1703, 1755
Asp700I	GAANNNNTTC	2 cut(s)	411, 1645
AspLEI	GCGC	4 cut(s)	841, 868, 1461, 1933
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	2 cut(s)	908, 1999
AsuHPI	GGTGA	6 cut(s)	168, 174, 466, 1151, 1383, 1470
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	2 cut(s)	1100, 1807
AvaII	GGWCC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	1818
BanI	GGYRCC	2 cut(s)	4, 14
BanII	GRGCYC	1 cut(s)	905
Bbv12I	GWGCWC	4 cut(s)	394, 905, 1107, 1941
BbvI	GCAGC	4 cut(s)	855, 1601, 1853, 1881
BccI	CCATC	6 cut(s)	224, 913, 1013, 1112, 1201, 2116
BceAI	ACGGC	2 cut(s)	937, 1565
BcgI	CGANNNNNNTGC	4 cut(s)	1081, 1115, 1619, 1653
BciT130I	CCWGG	2 cut(s)	478, 1279
BciVI	GTATCC	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	908, 1999
BcoDI	GTCTC	5 cut(s)	263, 543, 868, 1594, 1797
BfaI	CTAG	4 cut(s)	843, 888, 1337, 1494
BfmI	CTRYAG	2 cut(s)	869, 1867
BfrI	CTTAAG	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	1878
BglII	AGATCT	2 cut(s)	200, 1828
BisI	GCNGC	4 cut(s)	869, 1590, 1867, 1870
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	4 cut(s)	870, 1591, 1868, 1871
Bme1390I	CCNGG	4 cut(s)	478, 908, 1279, 1999
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	2 cut(s)	1100, 1807
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	3 cut(s)	6, 16, 1820
BmrFI	CCNGG	4 cut(s)	478, 908, 1279, 1999
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	9 cut(s)	624, 680, 728, 826, 913, 1101, 1257, 1573, 1643
BmuI	ACTGGG	1 cut(s)	153
BpmI	CTGGAG	3 cut(s)	408, 542, 1300
Bpu10I	CCTNAGC	2 cut(s)	1466, 1712
Bpu1102I	GCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	4 cut(s)	420, 525, 917, 1034
BpuMI	CCSGG	2 cut(s)	908, 1999
Bsa29I	ATCGAT	2 cut(s)	374, 1913
BsaHI	GRCGYC	1 cut(s)	2167
BsaI	GGTCTC	1 cut(s)	1797
BsaJI	CCNNGG	5 cut(s)	708, 906, 1277, 1581, 1997
Bsc4I	CCNNNNNNNGG	2 cut(s)	959, 982
Bse1I	ACTGG	8 cut(s)	148, 235, 525, 625, 1730, 1839, 1932, 1970
Bse3DI	GCAATG	2 cut(s)	41, 471
BseBI	CCWGG	2 cut(s)	478, 1279
BseCI	ATCGAT	2 cut(s)	374, 1913
BseDI	CCNNGG	5 cut(s)	708, 906, 1277, 1581, 1997
BseGI	GGATG	6 cut(s)	551, 730, 924, 928, 1272, 1564
BseLI	CCNNNNNNNGG	2 cut(s)	959, 982
BseMI	GCAATG	2 cut(s)	41, 471
BseMII	CTCAG	6 cut(s)	195, 302, 594, 1427, 1480, 1527
BseNI	ACTGG	8 cut(s)	148, 235, 525, 625, 1730, 1839, 1932, 1970
BseXI	GCAGC	4 cut(s)	855, 1601, 1853, 1881
Bsh1236I	CGCG	1 cut(s)	866
BshFI	GGCC	2 cut(s)	91, 234
BshNI	GGYRCC	2 cut(s)	4, 14
BshVI	ATCGAT	2 cut(s)	374, 1913
BsiHKAI	GWGCWC	4 cut(s)	394, 905, 1107, 1941
BsiHKCI	CYCGRG	2 cut(s)	1100, 1807
BsiSI	CCGG	3 cut(s)	12, 908, 1999
BslI	CCNNNNNNNGG	2 cut(s)	959, 982
BsmAI	GTCTC	5 cut(s)	263, 543, 868, 1594, 1797
BsnI	GGCC	2 cut(s)	91, 234
Bso31I	GGTCTC	1 cut(s)	1797
BsoBI	CYCGRG	2 cut(s)	1100, 1807
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	4 cut(s)	394, 905, 1107, 1941
Bsp143I	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	4 cut(s)	32, 163, 1526, 2082
BspANI	GGCC	2 cut(s)	91, 234
BspCNI	CTCAG	6 cut(s)	196, 303, 593, 1426, 1479, 1528
BspDI	ATCGAT	2 cut(s)	374, 1913
BspFNI	CGCG	1 cut(s)	866
BspHI	TCATGA	3 cut(s)	346, 1114, 1572
BspLI	GGNNCC	3 cut(s)	6, 16, 1820
BspMAI	CTGCAG	2 cut(s)	873, 1871
BspPI	GGATC	5 cut(s)	20, 176, 1479, 1813, 1826
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	2 cut(s)	4, 14
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	1797
BsrDI	GCAATG	2 cut(s)	41, 471
BsrI	ACTGG	8 cut(s)	148, 235, 525, 625, 1730, 1839, 1932, 1970
BssECI	CCNNGG	5 cut(s)	708, 906, 1277, 1581, 1997
BssMI	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
BssNI	GRCGYC	1 cut(s)	2167
Bst2UI	CCWGG	2 cut(s)	478, 1279
Bst4CI	ACNGT	7 cut(s)	19, 274, 643, 756, 970, 1696, 1859
Bst6I	CTCTTC	2 cut(s)	216, 255
BstACI	GRCGYC	1 cut(s)	2167
BstAFI	CTTAAG	1 cut(s)	395
BstAPI	GCANNNNNTGC	2 cut(s)	836, 1267
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	5 cut(s)	161, 1463, 1632, 1941, 2153
BstDSI	CCRYGG	2 cut(s)	708, 1581
BstF5I	GGATG	6 cut(s)	551, 730, 924, 928, 1272, 1564
BstFNI	CGCG	1 cut(s)	866
BstHHI	GCGC	4 cut(s)	841, 868, 1461, 1933
BstKTI	GATC	9 cut(s)	28, 171, 203, 378, 419, 1474, 1542, 1821, 1831
BstMAI	GTCTC	5 cut(s)	263, 543, 868, 1594, 1797
BstMBI	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
BstMWI	GCNNNNNNNGC	5 cut(s)	836, 1267, 1586, 1878, 1900
BstNI	CCWGG	2 cut(s)	478, 1279
BstNSI	RCATGY	4 cut(s)	1181, 1501, 1634, 2155
BstSCI	CCNGG	4 cut(s)	476, 906, 1277, 1997
BstSFI	CTRYAG	2 cut(s)	869, 1867
BstUI	CGCG	1 cut(s)	866
BstV1I	GCAGC	4 cut(s)	855, 1601, 1853, 1881
BstX2I	RGATCY	4 cut(s)	200, 1471, 1818, 1828
BstXI	CCANNNNNNTGG	2 cut(s)	484, 1278
BstYI	RGATCY	4 cut(s)	200, 1471, 1818, 1828
Bsu15I	ATCGAT	2 cut(s)	374, 1913
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	91, 234
BsuTUI	ATCGAT	2 cut(s)	374, 1913
BtgI	CCRYGG	2 cut(s)	708, 1581
BtsCI	GGATG	6 cut(s)	551, 730, 924, 928, 1272, 1564
BtsI	GCAGTG	1 cut(s)	1521
BtsIMutI	CAGTG	7 cut(s)	864, 966, 1025, 1146, 1521, 1533, 1855
Cac8I	GCNNGC	5 cut(s)	161, 1463, 1632, 1941, 2153
CciI	TCATGA	3 cut(s)	346, 1114, 1572
CfoI	GCGC	4 cut(s)	841, 868, 1461, 1933
Cfr13I	GGNCC	1 cut(s)	746
ClaI	ATCGAT	2 cut(s)	374, 1913
Csp6I	GTAC	4 cut(s)	101, 679, 752, 1224
CviQI	GTAC	4 cut(s)	101, 679, 752, 1224
DpnI	GATC	9 cut(s)	27, 170, 202, 377, 418, 1473, 1541, 1820, 1830
DpnII	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
DraI	TTTAAA	1 cut(s)	259
DraIII	CACNNNGTG	1 cut(s)	1861
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	89, 232
Eam1104I	CTCTTC	2 cut(s)	216, 255
EarI	CTCTTC	2 cut(s)	216, 255
Ecl136II	GAGCTC	1 cut(s)	903
Eco24I	GRGCYC	1 cut(s)	905
Eco31I	GGTCTC	1 cut(s)	1797
Eco32I	GATATC	1 cut(s)	1849
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	903
Eco57I	CTGAAG	2 cut(s)	2106, 2114
Eco88I	CYCGRG	2 cut(s)	1100, 1807
EcoICRI	GAGCTC	1 cut(s)	903
EcoRI	GAATTC	1 cut(s)	1703
EcoRII	CCWGG	2 cut(s)	476, 1277
EcoRV	GATATC	1 cut(s)	1849
EcoT22I	ATGCAT	2 cut(s)	1636, 1905
EcoT38I	GRGCYC	1 cut(s)	905
FalI	AAGNNNNNCTT	1 cut(s)	2176
FauI	CCCGC	1 cut(s)	2089
FblI	GTMKAC	1 cut(s)	1063
Fnu4HI	GCNGC	4 cut(s)	869, 1590, 1867, 1870
FokI	GGATG	6 cut(s)	558, 737, 931, 935, 1279, 1551
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	4 cut(s)	869, 1590, 1867, 1870
FspBI	CTAG	4 cut(s)	843, 888, 1337, 1494
FspI	TGCGCA	1 cut(s)	1460
GlaI	GCGC	4 cut(s)	840, 867, 1460, 1932
GluI	GCNGC	4 cut(s)	869, 1590, 1867, 1870
GsuI	CTGGAG	3 cut(s)	408, 542, 1300
HaeIII	GGCC	2 cut(s)	91, 234
HapII	CCGG	3 cut(s)	12, 908, 1999
HhaI	GCGC	4 cut(s)	841, 868, 1461, 1933
Hin1I	GRCGYC	1 cut(s)	2167
Hin6I	GCGC	4 cut(s)	839, 866, 1459, 1931
HinP1I	GCGC	4 cut(s)	839, 866, 1459, 1931
HincII	GTYRAC	1 cut(s)	1408
HindII	GTYRAC	1 cut(s)	1408
HindIII	AAGCTT	4 cut(s)	438, 560, 1652, 2088
HinfI	GANTC	9 cut(s)	50, 173, 343, 362, 371, 481, 703, 1417, 1838
HpaI	GTTAAC	1 cut(s)	1408
HpaII	CCGG	3 cut(s)	12, 908, 1999
HphI	GGTGA	6 cut(s)	168, 174, 466, 1151, 1383, 1470
Hpy166II	GTNNAC	7 cut(s)	825, 862, 894, 966, 1064, 1408, 1533
Hpy8I	GTNNAC	7 cut(s)	825, 862, 894, 966, 1064, 1408, 1533
Hpy99I	CGWCG	2 cut(s)	23, 1452
HpyAV	CCTTC	7 cut(s)	189, 1136, 1404, 1491, 1905, 2047, 2166
HpyCH4III	ACNGT	7 cut(s)	19, 274, 643, 756, 970, 1696, 1859
HpyCH4IV	ACGT	3 cut(s)	1372, 1432, 2167
HpyF10VI	GCNNNNNNNGC	5 cut(s)	836, 1267, 1586, 1878, 1900
HpySE526I	ACGT	3 cut(s)	1372, 1432, 2167
Hsp92I	GRCGYC	1 cut(s)	2167
HspAI	GCGC	4 cut(s)	839, 866, 1459, 1931
KspAI	GTTAAC	1 cut(s)	1408
Kzo9I	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
LmnI	GCTCC	4 cut(s)	389, 908, 1281, 2125
Lsp1109I	GCAGC	4 cut(s)	855, 1601, 1853, 1881
LweI	GCATC	9 cut(s)	624, 680, 728, 826, 913, 1101, 1257, 1573, 1643
MaeI	CTAG	4 cut(s)	843, 888, 1337, 1494
MaeII	ACGT	3 cut(s)	1372, 1432, 2167
MaeIII	GTNAC	6 cut(s)	618, 658, 1001, 1198, 1373, 1418
MalI	GATC	9 cut(s)	27, 170, 202, 377, 418, 1473, 1541, 1820, 1830
MboI	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
MboII	GAAGA	8 cut(s)	233, 239, 242, 314, 435, 527, 2025, 2078
MfeI	CAATTG	2 cut(s)	297, 452
MflI	RGATCY	4 cut(s)	200, 1471, 1818, 1828
MhlI	GDGCHC	4 cut(s)	394, 905, 1107, 1941
MlsI	TGGCCA	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	1426
MmeI	TCCRAC	3 cut(s)	738, 1233, 1471
Mox20I	TGGCCA	1 cut(s)	234
Mph1103I	ATGCAT	2 cut(s)	1636, 1905
MroXI	GAANNNNTTC	2 cut(s)	411, 1645
MscI	TGGCCA	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	1119, 1944
Msp20I	TGGCCA	1 cut(s)	234
MspA1I	CMGCKG	4 cut(s)	1132, 1489, 1592, 2084
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	12, 908, 1999
MspR9I	CCNGG	4 cut(s)	478, 908, 1279, 1999
MunI	CAATTG	2 cut(s)	297, 452
MvaI	CCWGG	2 cut(s)	478, 1279
MvnI	CGCG	1 cut(s)	866
MwoI	GCNNNNNNNGC	5 cut(s)	836, 1267, 1586, 1878, 1900
NciI	CCSGG	2 cut(s)	908, 1999
NdeII	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
NlaIV	GGNNCC	3 cut(s)	6, 16, 1820
NmuCI	GTSAC	3 cut(s)	658, 1198, 1418
NsbI	TGCGCA	1 cut(s)	1460
NsiI	ATGCAT	2 cut(s)	1636, 1905
NspI	RCATGY	4 cut(s)	1181, 1501, 1634, 2155
NspV	TTCGAA	1 cut(s)	320
PaeI	GCATGC	2 cut(s)	1634, 2155
PaeR7I	CTCGAG	1 cut(s)	1100
PagI	TCATGA	3 cut(s)	346, 1114, 1572
PdmI	GAANNNNTTC	2 cut(s)	411, 1645
PfeI	GAWTC	8 cut(s)	50, 173, 343, 362, 371, 481, 703, 1838
PflMI	CCANNNNNTGG	1 cut(s)	982
PkrI	GCNGC	4 cut(s)	870, 1591, 1868, 1871
PleI	GAGTC	1 cut(s)	1425
PpsI	GAGTC	1 cut(s)	1425
PsiI	TTATAA	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	476, 1277
PspGI	CCWGG	2 cut(s)	476, 1277
PspN4I	GGNNCC	3 cut(s)	6, 16, 1820
PspPI	GGNCC	1 cut(s)	746
PspXI	VCTCGAGB	1 cut(s)	1100
PstI	CTGCAG	2 cut(s)	873, 1871
PsuI	RGATCY	4 cut(s)	200, 1471, 1818, 1828
PvuII	CAGCTG	3 cut(s)	1132, 1489, 1592
RsaI	GTAC	4 cut(s)	102, 680, 753, 1225
RsaNI	GTAC	4 cut(s)	101, 679, 752, 1224
RseI	CAYNNNNRTG	2 cut(s)	1119, 1944
SacI	GAGCTC	1 cut(s)	905
SatI	GCNGC	4 cut(s)	869, 1590, 1867, 1870
Sau3AI	GATC	9 cut(s)	25, 168, 200, 375, 416, 1471, 1539, 1818, 1828
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	1 cut(s)	1426
ScrFI	CCNGG	4 cut(s)	478, 908, 1279, 1999
SduI	GDGCHC	4 cut(s)	394, 905, 1107, 1941
SfaNI	GCATC	9 cut(s)	624, 680, 728, 826, 913, 1101, 1257, 1573, 1643
SfcI	CTRYAG	2 cut(s)	869, 1867
Sfr274I	CTCGAG	1 cut(s)	1100
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	746
SlaI	CTCGAG	1 cut(s)	1100
SmiMI	CAYNNNNRTG	2 cut(s)	1119, 1944
SmlI	CTYRAG	6 cut(s)	395, 435, 540, 932, 1049, 1100
SmoI	CTYRAG	6 cut(s)	395, 435, 540, 932, 1049, 1100
SphI	GCATGC	2 cut(s)	1634, 2155
SsiI	CCGC	4 cut(s)	32, 163, 1526, 2082
SspMI	CTAG	4 cut(s)	843, 888, 1337, 1494
SstI	GAGCTC	1 cut(s)	905
StyD4I	CCNGG	4 cut(s)	476, 906, 1277, 1997
TaaI	ACNGT	7 cut(s)	19, 274, 643, 756, 970, 1696, 1859
TaiI	ACGT	3 cut(s)	1375, 1435, 2170
TatI	WGTACW	3 cut(s)	100, 751, 1223
TfiI	GAWTC	8 cut(s)	50, 173, 343, 362, 371, 481, 703, 1838
TscAI	CASTG	7 cut(s)	864, 973, 1032, 1153, 1528, 1540, 1862
TseFI	GTSAC	3 cut(s)	658, 1198, 1418
TseI	GCWGC	4 cut(s)	868, 1589, 1866, 1869
Tsp45I	GTSAC	3 cut(s)	658, 1198, 1418
TspDTI	ATGAA	8 cut(s)	42, 335, 555, 1187, 1320, 1561, 1696, 1739
TspGWI	ACGGA	3 cut(s)	931, 1557, 2065
TspRI	CASTG	7 cut(s)	864, 973, 1032, 1153, 1528, 1540, 1862
Van91I	CCANNNNNTGG	1 cut(s)	982
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	3 cut(s)	316, 1703, 1755
XceI	RCATGY	4 cut(s)	1181, 1501, 1634, 2155
XhoI	CTCGAG	1 cut(s)	1100
XmiI	GTMKAC	1 cut(s)	1063
XmnI	GAANNNNTTC	2 cut(s)	411, 1645
XspI	CTAG	4 cut(s)	843, 888, 1337, 1494
ZraI	GACGTC	1 cut(s)	2168
Zsp2I	ATGCAT	2 cut(s)	1636, 1905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.