Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

68555177 .. 68561235

Gene Structure 6059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG474600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGCGCCTTCCTCATCTGCAAGTTCGGGTGAAGATTCATCAACCCCGGACACCACCCAAAGCCACCTCCAGCATAGTTTCCTTCTTCACAAAGCATCTGATAAATTAATTTCAAGTGGCAAAGCCCGGAGGAGGAGGAGGAGGAGGATTGATCTGTCCCCCACAAAGACCGACGACGACGACAAGAAGCAATCCGATGATGAACGCTGGTTGAGAATGGAAGCTTTTCAGTTAGTTTGGTCAAGAATTGAATCCACTATCAACCATGTTCTGCGGAATATCAATGCTCGGGTTTTCGATCACATACGCCGCTGGGTCTGGGATTCCTTCAATGCTGCTATCAAACCACTTGCCACCATTTCTGCTGGCCCTTTTCCTATTGTCAGCCAAGTTACCTGTACACAGCTCTTCACTGGGCTCCTTCTCACCAATAATATGGAGTTTGTTGATGATATTTCGACATTTCAAGAGCTGGGCCTCTGCTTGAAATCCCATGGATGCCATGTGGCTAACCTTTCCTCCTTCGACTTTTCATCCAAGAATGGGATCGCTGGCTGTCTCACAAGTTTATTGAGACAGTTTCTCATGTCTACTTTTGATGCTGCTGATATGTCCATACTGGCATCATGGTACAGTCGGCAAGGAAACTATGGTTCCCCTGTGGTTGTCATTATAGATGATATGGAACGATGTTGTGGTGCTGTCTTGTCTGATTTCATTCTTATGTTGAGTGAATGGGTTGTGAAGATCCCAGTCATCTTAATAATGGGCGTTGCGACAACTCTGGATGCCCCTAGAAAAATACTTTCTTCAAATGTACTGCAGAAGTTGTGCCCTTGCAACTTCAAGTTGGGATCACCTGCTGAGAGGATGGATGCAGTTGTTGAGGCTGCTCTTGTGAGGCAGTGTTCTGGTTTTGCTGTTGGTCATAAGGTGGCTGTTTTTCTGCGGAACTACTTCTTAAATCAGGATGGTACATTGACATCTTTTGTTAGAGCATTGAAGGTTGCATGTGTTCAACATTTTTCCACGGAGCCTTTAAGCTTCCTGCTTGGATGGTTGCTTGTTAAAGAAGACAGTAAGGGAGTTCAGAGTGAGAAAGCGGTCAAGCTTGCTTCTGAGCTTTTATCTCTTGCAAGGAATCAAATAGCTGAACAAACTGAAGTCACTATAGTTCATAGTTTGACAGAGTTGACGAAATTGCAGAAGCTCTGGAGCACCGTTGTTCTGTGCTTATATGAAGCTGGGAAGTGTAACAAAACTCGATTGATAGACTTATTTTGTGAGGCACTTGATCCAGATACTTGCAACTTATTGGCTTCTGATGGTCTTACTGGAACTGGAAAAGGTCTTGTTCAATCTTTGTCAAGTGATCACTGTATGCTTGAGCAGAACTTGAGCTACAGAAAGGGACGCTTTATTTGCCAATTATTAGGTAGAGTGAGGGATCTTCCTGCAGCATTGCTTTGTCGGCTGCTGAATAGTTGGAAAAATCTCACTGTGGATGTTCTTGAGATTCATGACAAGGTAAAGGAGCTACAGTCAATATTAAAATTAGACGAAGGAAGTTGTAAACCAGATTTGAAGGAGATATCCAGAAGACATACATCTCGGAGTCCCTTAAAGATCGGTGAATCACAATCAATAAATGAAAAAGCCGCTATACTAATGGATTGCATGGTTAGGGATTTCATGAAGCCGATTGAGTGTACAGCTTTTCACGAAATTGTTTGCTATAGAAATGTTGAAAACCTTCAATCGGCATTAATTGGAGACTCACGGAAAATGATTCAAGTTGATCTTTTGGAGTTTCATAAAACCCTACAATGCGGTTGCTGCAGGAGGAGTGGCAACATACCATTGCCATCAATGCCTGATACGTCTATTATGTACACCCTGGCTCAGGAGCATGGCGATCTTATCAATCTTCATGACTGGTTCCAGTCTTTTAAAACTATTGTCATTCAGTACAGCAGAAAAGGGACAAGCAAACTGAAAAAGTCCCCACTTAAGAAAAGAAAGGAAAGGAATGAATCTGAAAACAAGAGTGAAGCATCCATTCAAGCCAGATTTTGCAGGGCAATCACAGAACTACAGATTACAGGTCTCATTCGGATGCCCAGCAAAAAACGTCGTGATTGTGTGCAGAGAGTGGCCTTTGGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

722

Amino Acids

81.04

Weight (kDa)

8.83

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC3_N	PF07034	47 - 350	6e-64	Origin recognition complex (ORC) subunit 3 N-terminus
WHD_ORC	PF18137	594 - 720	5.5e-28	Origin recognition complex winged helix C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	868
Acc36I	ACCTGC	1 cut(s)	868
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	590
AciI	CCGC	6 cut(s)	274, 310, 949, 1103, 1659, 1830
AclWI	GGATC	5 cut(s)	554, 742, 862, 1289, 1455
AcuI	CTGAAG	1 cut(s)	1182
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	7 cut(s)	400, 632, 819, 976, 1711, 1892, 1970
AfiI	CCNNNNNNNGG	4 cut(s)	132, 543, 1759, 1903
AflII	CTTAAG	1 cut(s)	2009
AjnI	CCWGG	1 cut(s)	1896
Alw21I	GWGCWC	1 cut(s)	1220
Alw26I	GTCTC	4 cut(s)	563, 568, 1767, 2111
AlwI	GGATC	5 cut(s)	554, 742, 862, 1289, 1455
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	367, 475, 2154
ApeKI	GCWGC	6 cut(s)	335, 602, 890, 1457, 1474, 1836
ArsI	GACNNNNNNTTYG	2 cut(s)	1404, 1436
AseI	ATTAAT	2 cut(s)	107, 1766
Asp700I	GAANNNNTTC	3 cut(s)	225, 956, 1752
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	368, 475
AsuC2I	CCSGG	2 cut(s)	47, 127
AsuHPI	GGTGA	4 cut(s)	41, 418, 849, 1643
AvaI	CYCGRG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	1080, 1606
Bbv12I	GWGCWC	1 cut(s)	1220
BbvI	GCAGC	6 cut(s)	322, 589, 877, 1461, 1469, 1823
BccI	CCATC	5 cut(s)	865, 965, 1050, 1319, 1873
BciT130I	CCWGG	1 cut(s)	1898
BclI	TGATCA	1 cut(s)	1372
BcnI	CCSGG	2 cut(s)	47, 127
BcoDI	GTCTC	4 cut(s)	563, 568, 1767, 2111
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	8 cut(s)	821, 1170, 1402, 1455, 1538, 1735, 1837, 2093
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	2009
BfuAI	ACCTGC	1 cut(s)	868
BisI	GCNGC	8 cut(s)	310, 336, 603, 891, 1458, 1475, 1659, 1837
BlsI	GCNGC	8 cut(s)	311, 337, 604, 892, 1459, 1476, 1660, 1838
Bme1390I	CCNGG	3 cut(s)	47, 127, 1898
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	368, 475
BmiI	GGNNCC	5 cut(s)	6, 419, 655, 1035, 1940
BmrFI	CCNGG	3 cut(s)	47, 127, 1898
BmrI	ACTGGG	2 cut(s)	423, 746
BmsI	GCATC	8 cut(s)	104, 488, 589, 632, 778, 865, 2063, 2106
BmuI	ACTGGG	2 cut(s)	423, 746
BpiI	GAAGAC	2 cut(s)	1080, 1606
BpmI	CTGGAG	2 cut(s)	53, 1234
Bpu10I	CCTNAGC	1 cut(s)	1902
BpuEI	CTTGAG	3 cut(s)	1406, 1417, 1532
BpuMI	CCSGG	2 cut(s)	47, 127
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	2111
BsaJI	CCNNGG	4 cut(s)	45, 493, 1029, 1896
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 1526, 1556
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 543, 1759, 1903
Bse1I	ACTGG	7 cut(s)	418, 624, 752, 1339, 1345, 1940, 1942
Bse3DI	GCAATG	2 cut(s)	1460, 1859
BseBI	CCWGG	1 cut(s)	1898
BseDI	CCNNGG	4 cut(s)	45, 493, 1029, 1896
BseLI	CCNNNNNNNGG	4 cut(s)	132, 543, 1759, 1903
BseMI	GCAATG	2 cut(s)	1460, 1859
BseMII	CTCAG	3 cut(s)	855, 1110, 1916
BseNI	ACTGG	7 cut(s)	418, 624, 752, 1339, 1345, 1940, 1942
BseRI	GAGGAG	6 cut(s)	145, 148, 151, 154, 157, 1858
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	6 cut(s)	322, 589, 877, 1461, 1469, 1823
BseYI	CCCAGC	4 cut(s)	312, 472, 1244, 2120
BsgI	GTGCAG	1 cut(s)	2165
BshFI	GGCC	3 cut(s)	369, 477, 2156
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	1220
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	47, 127
BslFI	GGGAC	5 cut(s)	142, 1425, 1602, 1987, 1996
BslI	CCNNNNNNNGG	4 cut(s)	132, 543, 1759, 1903
BsmAI	GTCTC	4 cut(s)	563, 568, 1767, 2111
BsmFI	GGGAC	5 cut(s)	142, 1425, 1602, 1987, 1996
BsnI	GGCC	3 cut(s)	369, 477, 2156
Bso31I	GGTCTC	1 cut(s)	2111
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	420, 836, 1220
Bsp1407I	TGTACA	3 cut(s)	398, 1709, 1890
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	6 cut(s)	274, 310, 949, 1103, 1659, 1830
BspANI	GGCC	3 cut(s)	369, 477, 2156
BspCNI	CTCAG	3 cut(s)	856, 1111, 1915
BspHI	TCATGA	3 cut(s)	1519, 1692, 1930
BspLI	GGNNCC	5 cut(s)	6, 419, 655, 1035, 1940
BspMAI	CTGCAG	3 cut(s)	825, 1459, 1841
BspMI	ACCTGC	1 cut(s)	868
BspPI	GGATC	5 cut(s)	554, 742, 862, 1289, 1455
BspQI	GCTCTTC	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	2009
BspTNI	GGTCTC	1 cut(s)	2111
BsrDI	GCAATG	2 cut(s)	1460, 1859
BsrGI	TGTACA	3 cut(s)	398, 1709, 1890
BsrI	ACTGG	7 cut(s)	418, 624, 752, 1339, 1345, 1940, 1942
BssECI	CCNNGG	4 cut(s)	45, 493, 1029, 1896
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	1898
Bst4CI	ACNGT	7 cut(s)	579, 635, 1079, 1222, 1379, 1501, 1542
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	2009
BstAUI	TGTACA	3 cut(s)	398, 1709, 1890
BstC8I	GCNNGC	3 cut(s)	367, 553, 1113
BstDEI	CTNAG	3 cut(s)	864, 1119, 1902
BstDSI	CCRYGG	2 cut(s)	493, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	1901
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	4 cut(s)	563, 568, 1767, 2111
BstMWI	GCNNNNNNNGC	4 cut(s)	1422, 1471, 1836, 1870
BstNI	CCWGG	1 cut(s)	1898
BstNSI	RCATGY	1 cut(s)	1014
BstSCI	CCNGG	3 cut(s)	45, 125, 1896
BstSFI	CTRYAG	8 cut(s)	821, 1170, 1402, 1455, 1538, 1735, 1837, 2093
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	6 cut(s)	322, 589, 877, 1461, 1469, 1823
BstV2I	GAAGAC	2 cut(s)	1080, 1606
BstX2I	RGATCY	2 cut(s)	747, 1447
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	2 cut(s)	747, 1447
BsuRI	GGCC	3 cut(s)	369, 477, 2156
BtgI	CCRYGG	2 cut(s)	493, 1029
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	4 cut(s)	411, 911, 1375, 1497
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	3 cut(s)	367, 553, 1113
CciI	TCATGA	3 cut(s)	1519, 1692, 1930
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	368, 475
CseI	GACGC	1 cut(s)	1422
Csp6I	GTAC	7 cut(s)	399, 631, 818, 975, 1710, 1891, 1969
CviQI	GTAC	7 cut(s)	399, 631, 818, 975, 1710, 1891, 1969
DdeI	CTNAG	3 cut(s)	864, 1119, 1902
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	1951
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	2111
Eco32I	GATATC	1 cut(s)	1593
Eco57I	CTGAAG	1 cut(s)	1182
Eco88I	CYCGRG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	1901
EcoRII	CCWGG	1 cut(s)	1896
EcoRV	GATATC	1 cut(s)	1593
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	420
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	493
FalI	AAGNNNNNCTT	4 cut(s)	1400, 1432, 1785, 1817
FaqI	GGGAC	5 cut(s)	142, 1425, 1602, 1987, 1996
FbaI	TGATCA	1 cut(s)	1372
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	8 cut(s)	310, 336, 603, 891, 1458, 1475, 1659, 1837
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	8 cut(s)	310, 336, 603, 891, 1458, 1475, 1659, 1837
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	8 cut(s)	310, 336, 603, 891, 1458, 1475, 1659, 1837
GsaI	CCCAGC	4 cut(s)	316, 476, 1248, 2124
GsuI	CTGGAG	2 cut(s)	53, 1234
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	369, 477, 2156
HapII	CCGG	2 cut(s)	47, 127
HgaI	GACGC	1 cut(s)	1422
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	1194
HindII	GTYRAC	1 cut(s)	1194
HindIII	AAGCTT	3 cut(s)	222, 1042, 1109
HpaII	CCGG	2 cut(s)	47, 127
HphI	GGTGA	4 cut(s)	41, 418, 849, 1643
Hpy166II	GTNNAC	6 cut(s)	401, 591, 1194, 1574, 1710, 1893
Hpy188I	TCNGA	9 cut(s)	100, 196, 712, 1092, 1120, 1324, 1614, 2038, 2115
Hpy8I	GTNNAC	6 cut(s)	401, 591, 1194, 1574, 1710, 1893
Hpy99I	CGWCG	4 cut(s)	176, 179, 182, 2136
HpyAV	CCTTC	9 cut(s)	18, 92, 337, 431, 532, 997, 1556, 1579, 1763
HpyCH4III	ACNGT	7 cut(s)	579, 635, 1079, 1222, 1379, 1501, 1542
HpyCH4IV	ACGT	2 cut(s)	1880, 2131
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1422, 1471, 1836, 1870
HpyF3I	CTNAG	3 cut(s)	864, 1119, 1902
HpySE526I	ACGT	2 cut(s)	1880, 2131
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	1372
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	5 cut(s)	423, 1033, 1215, 1534, 1906
Lsp1109I	GCAGC	6 cut(s)	322, 589, 877, 1461, 1469, 1823
LweI	GCATC	8 cut(s)	104, 488, 589, 632, 778, 865, 2063, 2106
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	2 cut(s)	1880, 2131
MaeIII	GTNAC	3 cut(s)	391, 1165, 1253
MboII	GAAGA	9 cut(s)	44, 77, 400, 757, 801, 1085, 1442, 1611, 1919
MflI	RGATCY	2 cut(s)	747, 1447
MhlI	GDGCHC	3 cut(s)	420, 836, 1220
MluCI	AATT	8 cut(s)	104, 108, 246, 1199, 1427, 1553, 1725, 1767
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	1624, 1769
MmeI	TCCRAC	1 cut(s)	1466
MroXI	GAANNNNTTC	3 cut(s)	225, 956, 1752
MslI	CAYNNNNRTG	2 cut(s)	722, 2114
MspA1I	CMGCKG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	2009
MspI	CCGG	2 cut(s)	47, 127
MspR9I	CCNGG	3 cut(s)	47, 127, 1898
MvaI	CCWGG	1 cut(s)	1898
MwoI	GCNNNNNNNGC	4 cut(s)	1422, 1471, 1836, 1870
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	47, 127
NcoI	CCATGG	1 cut(s)	493
NlaIV	GGNNCC	5 cut(s)	6, 419, 655, 1035, 1940
NmuCI	GTSAC	1 cut(s)	1165
NspI	RCATGY	1 cut(s)	1014
PagI	TCATGA	3 cut(s)	1519, 1692, 1930
PaqCI	CACCTGC	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	413
PdmI	GAANNNNTTC	3 cut(s)	225, 956, 1752
PfeI	GAWTC	8 cut(s)	35, 251, 323, 1141, 1516, 1634, 1789, 2033
PkrI	GCNGC	8 cut(s)	311, 337, 604, 892, 1459, 1476, 1660, 1838
PleI	GAGTC	2 cut(s)	1623, 1769
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	1623, 1769
PshBI	ATTAAT	2 cut(s)	107, 1766
Psp6I	CCWGG	1 cut(s)	1896
PspFI	CCCAGC	4 cut(s)	312, 472, 1244, 2120
PspGI	CCWGG	1 cut(s)	1896
PspN4I	GGNNCC	5 cut(s)	6, 419, 655, 1035, 1940
PspPI	GGNCC	2 cut(s)	368, 475
PsrI	GAACNNNNNNTAC	2 cut(s)	1385, 1417
PstI	CTGCAG	3 cut(s)	825, 1459, 1841
PsuI	RGATCY	2 cut(s)	747, 1447
RsaI	GTAC	7 cut(s)	400, 632, 819, 976, 1711, 1892, 1970
RsaNI	GTAC	7 cut(s)	399, 631, 818, 975, 1710, 1891, 1969
RseI	CAYNNNNRTG	2 cut(s)	722, 2114
SapI	GCTCTTC	1 cut(s)	413
SatI	GCNGC	8 cut(s)	310, 336, 603, 891, 1458, 1475, 1659, 1837
Sau96I	GGNCC	2 cut(s)	368, 475
SchI	GAGTC	2 cut(s)	1624, 1769
ScrFI	CCNGG	3 cut(s)	47, 127, 1898
SduI	GDGCHC	3 cut(s)	420, 836, 1220
SfaNI	GCATC	8 cut(s)	104, 488, 589, 632, 778, 865, 2063, 2106
SfcI	CTRYAG	8 cut(s)	821, 1170, 1402, 1455, 1538, 1735, 1837, 2093
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	722, 2114
SmlI	CTYRAG	4 cut(s)	1385, 1396, 1511, 2009
SmoI	CTYRAG	4 cut(s)	1385, 1396, 1511, 2009
Sse9I	AATT	8 cut(s)	104, 108, 246, 1199, 1427, 1553, 1725, 1767
SsiI	CCGC	6 cut(s)	274, 310, 949, 1103, 1659, 1830
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1548
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	3 cut(s)	45, 125, 1896
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	7 cut(s)	579, 635, 1079, 1222, 1379, 1501, 1542
TaiI	ACGT	2 cut(s)	1883, 2134
TaqI	TCGA	4 cut(s)	297, 458, 525, 1264
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	8 cut(s)	104, 108, 246, 1199, 1427, 1553, 1725, 1767
TatI	WGTACW	5 cut(s)	398, 817, 1709, 1890, 1968
TauI	GCSGC	2 cut(s)	312, 1661
TfiI	GAWTC	8 cut(s)	35, 251, 323, 1141, 1516, 1634, 1789, 2033
TscAI	CASTG	4 cut(s)	418, 911, 1382, 1504
TseFI	GTSAC	1 cut(s)	1165
TseI	GCWGC	6 cut(s)	335, 602, 890, 1457, 1474, 1836
Tsp45I	GTSAC	1 cut(s)	1165
TspGWI	ACGGA	2 cut(s)	1046, 1795
TspRI	CASTG	4 cut(s)	418, 911, 1382, 1504
Vha464I	CTTAAG	1 cut(s)	2009
VspI	ATTAAT	2 cut(s)	107, 1766
XagI	CCTNNNNNAGG	1 cut(s)	1901
XceI	RCATGY	1 cut(s)	1014
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	3 cut(s)	225, 956, 1752
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.