Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8125142.1

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Reverse (-)

34 .. 551

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8125142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgtccatactggcatcatggtacagtcggcaaggaaactatggttcccctgtggttgtcattatagatgatatggaacgatgttgtggtgctgtcttgtctgatttcattcttatgttgaggtattctaaccccaagcctgaatgggttgtgaagatcccagtcatcttaataatgggcgttgcgacaactctggatgcccctagaaaaatactttcttcaaatgtactgcagaagttgtgcccttgcaacttcaagttgggatcacctgctgagaggatggatgcagttgttgaggctgctcttgtcaggcagtgttctggttttgctgttggtcataaggtggctgtttttctgcggaactacttcttaaatcaggatggtacattgacatcttttgttagagcattgaaggttggtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

141

Amino Acids

15.47

Weight (kDa)

9.1

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	2 cut(s)	151, 271
AfaI	GTAC	3 cut(s)	23, 228, 385
AgsI	TTSAA	3 cut(s)	222, 256, 412
AlwI	GGATC	2 cut(s)	151, 271
ApeKI	GCWGC	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	274, 374
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	23, 187, 274
BmuI	ACTGGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	15, 161
BseGI	GGATG	4 cut(s)	202, 285, 289, 385
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	15, 161
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	156, 263
BspACI	CCGC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	151, 271
BsrI	ACTGG	2 cut(s)	15, 161
BssMI	GATC	2 cut(s)	156, 263
Bst4CI	ACNGT	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	4 cut(s)	202, 285, 289, 385
BstKTI	GATC	2 cut(s)	159, 266
BstMBI	GATC	2 cut(s)	156, 263
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	202, 285, 289, 385
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
BveI	ACCTGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	22, 227, 384
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	3 cut(s)	139, 299, 347
CviKI_1	RGCY	3 cut(s)	139, 299, 347
CviQI	GTAC	3 cut(s)	22, 227, 384
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	158, 265
DpnII	GATC	2 cut(s)	156, 263
FaeI	CATG	1 cut(s)	21
FaiI	YATR	7 cut(s)	8, 19, 42, 65, 74, 116, 339
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	4 cut(s)	209, 292, 296, 392
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	194, 377
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	232, 249, 287
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	156, 263
LpnPI	CCDG	8 cut(s)	63, 153, 174, 179, 282, 295, 306, 362
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	3 cut(s)	23, 187, 274
MaeI	CTAG	1 cut(s)	204
MalI	GATC	2 cut(s)	158, 265
MboI	GATC	2 cut(s)	156, 263
MboII	GAAGA	2 cut(s)	166, 210
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	114, 270, 289
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	170, 371, 424
MslI	CAYNNNNRTG	1 cut(s)	113
NdeII	GATC	2 cut(s)	156, 263
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	3 cut(s)	23, 228, 385
RsaNI	GTAC	3 cut(s)	22, 227, 384
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	170, 371, 424
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	156, 263
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	4 cut(s)	125, 271, 345, 417
SfaNI	GCATC	3 cut(s)	23, 187, 274
SfcI	CTRYAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	113
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	26
TatI	WGTACW	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	170, 371, 424
Tru9I	TTAA	3 cut(s)	170, 371, 424
TscAI	CASTG	1 cut(s)	320
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.