Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

4756184 .. 4760326

Gene Structure 4143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCTGGTTGTATGGGAATTGCGGAAGGAAAAGCATTAATTGGAGACTCACGGAAAATGATTCAAGTGGATCTTTTGGAGTTTCATAAAACCCTAAAATGCAGTTGCTGCAGGAGGAGTGACAACATACCATTGCCATCAATGCCTGATACCTCTATTATGTACACCCTGGCTCAGGAGCATGGCGATCTAATCAATCTTCATGACTGGTTCCAGTCTTTCAAAACCATTGTCATTCAGTACAGCAGAAAGGGGACAAGCAAACTGGAAAAGTCCCCACTTAAGAAAAGAAAGGAAAGGAATGAATCTGAAAACAAGAGTGAAGCATCCATTCAGTATCCTTTTGATTTTTGTTCTGCACAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

8.6

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_ORC	PF18137	18 - 108	7.9e-18	Origin recognition complex winged helix C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	164, 242, 365
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	65, 223
AjnI	CCWGG	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	108
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AseI	ATTAAT	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	109
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	3 cut(s)	212, 214, 270
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	3 cut(s)	212, 214, 270
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	342
BslFI	GGGAC	2 cut(s)	259, 268
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	259, 268
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	70, 187
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	131
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	212, 214, 270
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	70, 187
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	363
BstAFI	CTTAAG	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	2 cut(s)	73, 190
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	70, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 142
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	326
CaiI	CAGNNNCTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	163, 241, 364
CviAII	CATG	2 cut(s)	182, 203
CviJI	RGCY	1 cut(s)	173
CviKI_1	RGCY	1 cut(s)	173
CviQI	GTAC	3 cut(s)	163, 241, 364
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	72, 189
DpnII	GATC	2 cut(s)	70, 187
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	185, 206
FaiI	YATR	6 cut(s)	14, 87, 128, 161, 183, 204
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	2 cut(s)	259, 268
FatI	CATG	2 cut(s)	181, 202
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	185, 206
HinfI	GANTC	3 cut(s)	47, 61, 305
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	176, 203
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	102, 111, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 142
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	185, 206
Kzo9I	GATC	2 cut(s)	70, 187
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	8 cut(s)	97, 155, 159, 161, 182, 193, 227, 251
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	72, 189
MboI	GATC	2 cut(s)	70, 187
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	2 cut(s)	18, 39
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	108, 163
MseI	TTAA	2 cut(s)	38, 282
MspCI	CTTAAG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	108, 142
NdeII	GATC	2 cut(s)	70, 187
NlaIII	CATG	2 cut(s)	185, 206
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	119
PagI	TCATGA	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	61, 305
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	3 cut(s)	164, 242, 365
RsaNI	GTAC	3 cut(s)	163, 241, 364
SaqAI	TTAA	2 cut(s)	38, 282
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	70, 187
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	18, 39
SsiI	CCGC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	363
TasI	AATT	2 cut(s)	18, 39
TatI	WGTACW	3 cut(s)	162, 240, 363
TfiI	GAWTC	2 cut(s)	61, 305
Tru1I	TTAA	2 cut(s)	38, 282
Tru9I	TTAA	2 cut(s)	38, 282
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	74, 191, 318
TspGWI	ACGGA	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.