Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003655

Physical Location & Seq

Genomic Coordinates Forward (+)

53084279 .. 53086450

Gene Structure 2172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGTTGCTTTGTTCATGTGACAGAAGACATACATCTCGGAGTCCCTTAAAGATTGTGGATCTTTTGGAGTTTCATAAAACCCTACAATGCAGTTGCTGCAGGAGGAGTGACAACATACCATTGCCATCAATGCCTGATACCTCTATTATGTTGAGATTGAAGTGTAAAGGTTGGAGCAGCCAAGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC3_N

Protein Analysis

63

Amino Acids

7.26

Weight (kDa)

9.34

Isoelectric Point (pI)

90.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16690 AT5G16690
fragaria_vesca	FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260 FvH4_7g34260
malus_domestica	MD01G1239300.v1.1 MD07G1032700.v1.1
prunus_persica	Prupe.2G329300_v2.0.a1
pyrus_communis	pycom07g02310
rosa_chinensis	RchiOBHm_Chr1g0384611 RchiOBHm_Chr6g0290011
rosa_laevigata	RLG00000000745 RLG00000026027
rosa_multiflora	Rmu_co8125142.1_g000001 Rmu_co8285713.1_g000001 Rmu_sc0012136.1_g000030
rosa_roxburghii	Rroxscaffold_4G00276520
rosa_rugosa	Rorug01G0450000 Rorug01G0450100
rosa_samantha	Rh1AG348300 Rh1AG474600 Rh1BG432700 Rh1CG445900 Rh1DG465300 Rh5DG247400
rosa_wichuraiana	Rw1G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	160
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	96, 177
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	2 cut(s)	97, 178
BlsI	GCNGC	2 cut(s)	98, 179
BpiI	GAAGAC	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	119
BssMI	GATC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 130
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	96
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	1 cut(s)	180
CviKI_1	RGCY	1 cut(s)	180
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
FaeI	CATG	1 cut(s)	18
FaiI	YATR	5 cut(s)	16, 30, 75, 116, 149
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	97, 178
Fsp4HI	GCNGC	2 cut(s)	97, 178
GluI	GCNGC	2 cut(s)	97, 178
Hin1II	CATG	1 cut(s)	18
HinfI	GANTC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	90, 99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 130
Hsp92II	CATG	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	85, 147
Lsp1109I	GCAGC	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	17, 107
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	2 cut(s)	96, 151
MseI	TTAA	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	96, 130
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	17, 107
PkrI	GCNGC	2 cut(s)	98, 179
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	97, 178
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	49
SetI	ASST	2 cut(s)	143, 172
SfcI	CTRYAG	1 cut(s)	97
SgeI	CNNG	4 cut(s)	27, 48, 112, 146
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	17, 107
TseI	GCWGC	2 cut(s)	96, 177
Tsp45I	GTSAC	2 cut(s)	17, 107
TspDTI	ATGAA	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.